1,653 Matching Annotations
  1. Apr 2023
    1. Hutchins, Robert M., Mortimer J. Adler, and William Gorman, eds. The Great Ideas: A Syntopicon of Great Books of the Western World, Volume II, Man to World. 1st ed. Vol. 3. 54 vols. The Great Books of the Western World. Chicago, IL: Encyclopædia Britannica, Inc., 1952.

    1. Hutchins, Robert M., Mortimer J. Adler, and William Gorman, eds. The Great Ideas: A Syntopicon of Great Books of the Western World, Volume I, Angel to Love. 1st ed. Vol. 2. 54 vols. Great Books of the Western World. Chicago, IL: Encyclopædia Britannica, Inc., 1952.

    1. Tharp, Twyla. The Creative Habit: Learn It and Use It for Life. Simon & Schuster, 2006. https://www.simonandschuster.com/books/The-Creative-Habit/Twyla-Tharp/9780743235273.

      annotation target: urn:x-pdf:39643634366262353731363464363334626534646334316331613038363337663139633264363536643732653731376136643130653762343638306332343434

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    1. Llewelyn, J. E. “Zettel. By Ludwig Wittgenstein. Edited by G. E. M. Anscombe and G. H. von Wright. Translated by G. E. M. Anscombe. (Oxford: Basil Blackwell. 1967. Pp. v + ve + 124 + 124e. Price 37s 6d).” The Philosophical Quarterly 18, no. 71 (April 1968): 176. https://doi.org/10.2307/2217524.

    1. Corbett, Edward P. J. Classical Rhetoric for the Modern Student. 1st (Second Printing). 1965. Reprint, Oxford University Press, 1966.

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    1. 10 M. Hamasaki, T. Noda, M. Baba, Y. Ohsumi, Starvation triggers the delivery of the endoplasmic reticulum to the vacuole via autophagy in yeast. Traffic 6, 56–65 (2005).

      Known as the first article to described ER-phagy.

      In this article, authors characterized the fate of the ER in response to starvation, and demonstrated a significant linkage to autophagy.

      Abstract: Autophagy is a survival mechanism necessary for eukaryotic cells to overcome nutritionally challenged environments. When autophagy is triggered, cells degrade nonselectively engulfed cytosolic proteins and free ribosomes that are evenly distributed throughout the cytoplasm. The resulting pool of free amino acids is used to sustain processes crucial for survival. Here we characterize an autophagic degradation of the endoplasmic reticulum (ER) under starvation conditions in addition to cytosolic protein degradation. Golgi membrane protein was not engulfed by the autophagosome under the same conditions, indicating that the uptake of ER by autophagosome was the specific event. Although the ER exists in a network structure that is mutually connected and resides predominantly around the nucleus and beneath the plasma membrane, most of autophagosome engulfed ER. The extent of the ER uptake by autophagy was nearly identical to that of the soluble cytosolic proteins. This phenomenon was explained by the appearance of fragmented ER membrane structures in almost all autophagosomes. Furthermore, ER dynamism is required for this process: ER uptake by autophagosomes occurs in an actin-dependent manner.

    1. 3. D. E. Ingber, FASEB J. 20, 811 (2006).

      In this review article, by well-known tissue engineer Donald Ingber, he discusses the various factors that influence cellular growth and development. Ingber notes that mechanical forces, such as tension and compression, can have a significant impact on cell division, growth, and communication, particularly in the lungs during inhalation and exhalation. Utilizing 3D cell cultures and lung-on-a-chip technology could potentially replicate these mechanical forces, leading to more accurate representation of human biology in drug testing. This could eventually lead to animal studies becoming obsolete!

    2. 4. G. M. Whitesides, E. Ostuni, S. Takayama, X. Y. Jiang,D. E. Ingber, Annu. Rev. Biomed. Eng. 3, 335 (2001). 5. A. Khademhosseini, R. Langer, J. Borenstein,J. P. Vacanti, Proc. Natl. Acad. Sci. U.S.A. 103, 2480 (2006). 6. J. El-Ali, P. K. Sorger, K. F. Jensen, Nature 442, 403 (2006). 7. I. Meyvantsson, D. J. Beebe, Annu. Rev. Anal. Chem. 1,423 (2008).

      The following research papers discuss the potential of microfluidic devices and surface patterning to create advanced cell culture models. For example, Khademhosseini et al. discuss the potential for microfluidic devices to assess the problems with modern 3D tissue models. For example, Langer et al. discuss how standard cell cultures cannot replicate the repetitive mechanical strain that human organs such as lungs and gut undergo every day. The authors also discuss how oxygen and protein transport through these tissue scaffolds does not accurately mimic human conditions. While attempts have been made to improve cell-cell connectivity and nutrient transport in 3D cultures, microfluidic technology provides a potential pathway to generate accurate and viable organ models.

    3. 2. F. Pampaloni, E. G. Reynaud, E. H. K. Stelzer, Nat. Rev. Mol. Cell Biol. 8, 839 (2007).

      Pampaloni et al. claim that 3D cell culture models help mimic the functions of living tissues to predict the cellular responses of real organisms.

      The authors believe that 3D cell cultures will have a strong impact on drug screening and can also decrease the use of laboratory animals for drug discovery and development.

    4. 32. V. L. Colvin, Nat. Biotechnol. 21, 1166 (2003).

      Vicki L. Colvin explores the potential environmental impact of engineered nanomaterials. There is a growing debate on whether the environmental and social costs of nanotechnology outweigh its many benefits. Today, very few studies have been done to study the environmental effects of nanomaterials!

    5. 41. C. Zhang, Z. Q. Zhao, N. A. Abdul Rahim, D. van Noort, H. Yu, Lab Chip 9, 3185 (2009).

      Zhang et. al have developed a multi-channel 3D microfluidic cell culture system with compartmentalized microenvironments to culture different 3D cells that can simultaneously represent different organs in the body! This system demonstrates potential applications in human drug screening to supplement or replace animal models.

    6. 31. A. Nel, T. Xia, L. Mädler, N. Li, Science 311, 622 (2006).

      Nel et. al discusses potential toxic effects of nanomaterials; structures with one dimension of 100 nanometers or less, that are used in a variety of commercial applications such as semiconductors, drug carriers, and cosmetics. Due to their size, nanoparticles exhibit unique properties, but this also makes them potentially harmful to biological systems and the environment. The authors caution that it is crucial to establish principles and testing protocols to ensure the safe manufacture and use of nanomaterials in the market.

    7. 22. S. Takayama et al., Adv. Mater. 13, 570 (2001).

      Takayama et. al report a new way of manufacturing microchannels out of PDMS that can be smaller than the width of a human hair! The process involves the controlled etching of a PDMS slab to create novel microchannel geometries. The authors have high hopes for their technology: "We believe that these procedures will enable new types of studies in fundamental cell biology, and that they will also be useful in the microfabrication of devices that require a high-level of control over the behavior of cells"

    8. 19. G. J. Mahler, M. B. Esch, R. P. Glahn, M. L. Shuler, Biotechnol. Bioeng. 104, 193 (2009).

      Mahler et. al have developed a microscale cell culture of the GI tract that includes digestion, a mucus layer, and cell populations. This can provide rapid, inexpensive, and accurate predictions of the body's response to drugs and chemicals, as demonstrated by their experiments with acetaminophen!

    9. 12. D. Huh et al., Proc. Natl. Acad. Sci. U.S.A.104, 18886 (2007).

      Huh et. al have developed a microfabricated airway system that can mimic physiologic or pathologic liquid flows found in the respiratory system! The authors engineered an on-chip human airway and demonstrated cellular-level lung injury, similar to symptoms characteristic of a wide range of pulmonary diseases.

    10. 1. J. C. Davila, R. J. Rodriguez, R. B. Melchert, D. Acosta Jr., Annu. Rev. Pharmacol. Toxicol. 38, 63 (1998).

      Davilla et. al. discuss the advantages and disadvantages of lab-grown cell cultures that can mimic the function of kidneys and livers. While these cultures are inexpensive and can help measure drug-specific tissue interactions at a cellular/molecular level, the models do not accurately account for molecular transport and toxicity interactions between tissues and organs. This is because the cultures are grown on a flat surface, rather than in a 3D organ-like configuration. The authors conclude that cell culture models are a step towards pharmaceutical testing that does not use animal models, but further development is needed to effectively mimic the human body's reactions to various drugs.

    1. Ferguson, Niall. “I’m Helping to Start a New College Because Higher Ed Is Broken.” Bloomberg.Com, November 8, 2021, sec. Opinion. https://www.bloomberg.com/opinion/articles/2021-11-08/niall-ferguson-america-s-woke-universities-need-to-be-replaced.

      Seems like a lot of cherry picking here... also don't see much evidence of progress in a year and change.

      Only four jobs listed on their website today: https://jobs.lever.co/uaustin. Note all are for administration and none for teaching. Most have a heavy fundraising component.

    1. Satire in the Age of Murdoch and Trump. The Problem With Jon Stewart Podcast, 2023-03-09. https://www.youtube.com/watch?v=pbOiXmMnyw4.

      Watched most of this passively while reading on 2023-04-06

    1. Armstrong, Dorsey. King Arthur: History and Legend (Course Guidebook). Great Courses 2376. Chantilly, VA: The Teaching Company, 2015.

      King Arthur: History and Legend. Streaming Video. Vol. 2376. The Great Courses: Literature and Language. Chantilly, VA: The Teaching Company, 2015. https://www.wondrium.com/king-arthur-history-and-legend.

  2. Mar 2023
    1. DeRosa, Robin. Interdisciplinary Studies: A Connected Learning Approach. Rebus Communities, 2016. https://press.rebus.community/idsconnect/.


      found via <br /> Sheridan, Victoria. “A Pedagogical Endeavor.” Inside Higher Ed, August 9, 2017. https://www.insidehighered.com/digital-learning/article/2017/08/09/robin-derosas-oer-pedagogical-endeavor.

      On first blush it looks like I've read portions of some of these chapters as blogposts on the authors' original websites. Should be interesting to see how those are linked/credited.

      Given the writing contained in the book it would be interesting to see Pressbooks and/or the Rebus Community allow support for having the lead of a project be credited as an "editor" on the front page rather than to default them as an "author".

    1. Hayes, William C. Review of Historical Records of Rameses III, by William F. Edgerton and John A. Wilson. American Journal of Archaeology 40, no. 4 (1936): 558–59. https://doi.org/10.2307/498809.

      https://www.jstor.org/stable/498809

      ...have been diligently consulted and compared with the present versions and the authors have also availed themselves of the invaluable material contained in the Zettelkasten of the Berlin Wirterbuch der...

      This is the oldest appearance of the word "Zettelkasten" appearing in a journal article which I could find on JSTOR.

      I'm not surprised it's in a journal in the humanities and specifically on archaeology.

      Update: even better, this has introduced me to a massive new ZK: Wörterbuch der ägyptischen Sprache!


      Where is Indiana Jones' zettelkasten?!

    1. McCauley, Edward Y. “A Dictionary of the Egyptian Language.” Transactions of the American Philosophical Society 16, no. 1 (1883): 1–241. https://doi.org/10.2307/1005403.

      Prior to the Wörterbuch der ägyptischen Sprache, but nothing brilliant with respect to use of a zettelkasten to create.

    1. Hayes, William C. Review of Historical Records of Rameses III, by William F. Edgerton and John A. Wilson. American Journal of Archaeology 40, no. 4 (1936): 558–59. https://doi.org/10.2307/498809.

      Tagged this because it's the first appearance of Zettelkasten in an English language setting in the JSTOR repository.

      see also: https://hypothes.is/a/RYZOssqXEe2H5wtABI0puA

      Started on 2023-03-24; finished on 2023-03-27.

    1. Süss, Wilhelm. Karl Morgenstern (1770-1852), eloquentiae, I - ll. Gr. et Lat., antiquitatum, aesthetices et historiae litterarum atque artis p.p.o. simulque bibliothecae academicae praefectus : ein kulturhistorischer Versuch. Dorpat : Mattiesen. Accessed March 24, 2023. https://jstor.org/stable/community.32963350.

      Karl Morgenstern (1770-1852), eloquence, I - ll. Gr. and Lat., antiquities, aesthetics and history of literature and art ppo and at the same time in charge of the academic library: ein kulturhistorischer Versuch<br /> 1928<br /> Sweet, William<br /> Karl Morgenstern (1770-1852), eloquence, I - ll. Gr. and Lat., antiquities, aesthetics and history of literature and art ppo and at the same time in charge of the academic library: ein kulturhistorischer Versuch,

      ... the ancient ones etc., his note boxes filled with quotations He compares the nations, speaks of the Germans who, since Gellert, “read and write and read what. has, eyes.. other nation has one, Leipziger which boasts such staid mass catalogues?” But not the word interpreters of the ancients, who the ...

    1. Stroebe, Lilian L. “Die Stellung Des Mittelhochdeutschen Im College-Lehrplan.” Monatshefte Für Deutsche Sprache Und Pädagogik, 1924, 27–36. https://www.jstor.org/stable/44327729

      The place of Middle High German in the college curriculum<br /> Lilian L. Stroebe<br /> Monthly magazines for German language and pedagogy (1924), pp. 27-36

      ... of course to the reading material. Especially in the field of etymology it is easy to stimulate the pupils' independence. For years I have had each of my students create an etymological card dictionary with good success, and I see that at the end of the course they have this card box ...

    1. Wigent, William David, Burton David William Housel, and Edward Harry Gilman. Modern Filing and How to File: A Textbook on Office System. Rochester, N.Y.: Yawman & Erbe Mfg. Co., 1916. http://archive.org/details/modernfilingate02compgoog.

      Original .pdf converted with docdrop.org for OCR annotation on 2023-03-24.

      annotation target: urn:x-pdf:3c1f14d64c91cf4b513efa16df4ed90d

      Annotations: https://hypothes.is/users/chrisaldrich?q=url%3Aurn%3Ax-pdf%3A3c1f14d64c91cf4b513efa16df4ed90d

    1. Watts, Charles J. The Cost of Production. Muskegon, MI: The Shaw-Walker Company, 1902. http://archive.org/details/costproduction01wattgoog.

      Short book on managing manufacturing costs. Not too much of an advertisement for Shaw-Walker manufactured goods (files, file management, filing cabinets, etc.). Only 64 pages are the primary content and the balance (about half) are advertisements.

      Given the publication date of 1902, this would have preceded the publication of System Magazine which began in 1903. This may have then been a prototype version of an early business magazine, but with a single author, no real editorial, and only one article.

      Presumably it may also have served the marketing interests of Shaw-Walker as a marketing piece as well.


      Tangentially, I'm a bit intrigued by the "Mr. Morse" mentioned on page 109 who is being touted as an in-house consultant for Shaw-Walker.... Is this the same Frank Morse who broke off to form the Browne-Morse Co.? (very likely)

      see: see also: https://hypothes.is/a/Sp8s4sprEe24jitvkjkxzA for a snippet on Frank Morse.

    1. Heyde, Johannes Erich. Technik des wissenschaftlichen Arbeitens. (Sektion 1.2 Die Kartei) Junker und Dünnhaupt, 1931.

      annotation target: urn:x-pdf:00126394ba28043d68444144cd504562

      (Unknown translation from German into English. v1 TK)

      The overall title of the work (in English: Technique of Scientific Work) calls immediately to mind the tradition of note taking growing out of the scientific historical methods work of Bernheim and Langlois/Seignobos and even more specifically the description of note taking by Beatrice Webb (1926) who explicitly used the phrase "recipe for scientific note-taking".

      see: https://hypothes.is/a/BFWG2Ae1Ee2W1HM7oNTlYg

      first reading: 2022-08-23 second reading: 2022-09-22

      I suspect that this translation may be from Clemens in German to Scheper and thus potentially from the 1951 edition?

      Heyde, Johannes Erich. Technik des wissenschaftlichen Arbeitens; eine Anleitung, besonders für Studierende. 8., Umgearb. Aufl. 1931. Reprint, Berlin: R. Kiepert, 1951.

    1. Bender, Emily M., Timnit Gebru, Angelina McMillan-Major, and Shmargaret Shmitchell. “On the Dangers of Stochastic Parrots: Can Language Models Be Too Big? 🦜” In Proceedings of the 2021 ACM Conference on Fairness, Accountability, and Transparency, 610–23. FAccT ’21. New York, NY, USA: Association for Computing Machinery, 2021. https://doi.org/10.1145/3442188.3445922.

      Would the argument here for stochastic parrots also potentially apply to or could it be abstracted to Markov monkeys?

    1. I agree with Ahrens that most writing books teach you about making time to write (Zeruvabel), taking it easy with your writing (Jensen), writing properly and without bullshit (Bernoff), producing text (Dunleavy, Kamler & Thomson), but very few if any teach note-taking FOR WRITING

      Raul Pacheco-Vega 2018-11-29 https://twitter.com/raulpacheco/status/1068166332947021825

      Some excellent references on writing and their strengths. Heavy focus on academic writing.

      (via longer thread starting with https://twitter.com/raulpacheco/status/1325630582894850048?lang=en)

    1. A survey of 230 diverse bacterial and archaeal genomes found evidence of DNA methylation in 93% of genomes, with a diverse array of methylated motifs (834 distinct motifs; average of three motifs per organism)
    1. conjugative plasmids have broad-host ranges23, are resistant to restriction-modification systems24, are easy to engineer with large coding capacities25, and do not require a cellular receptor26 that would provide a facile mechanism for bacterial resistance.
    1. Bacterial cells are typically one thousandth the volume of mammalian cells, which places them near the edge of instrument detection. At this size it can be challenging to differentiate viable cells from debris of similar size
    1. Detailed descriptions, assumptions, limitations and test cases of many popular statistical methods for ecological research can be found in the GUSTAME server (Buttigieg and Ramette, 2014), and in the review by Paliy and Shankar (2016).
    2. condensing the information into two- or three-dimensional spaces. A very good overview of techniques to achieve this was written by Paliy and Shankar (2016).
    1. There are several widely used tool collections, e.g., QIIME 2 [13], mothur [14], usearch [15], and vsearch [16], and 1-stop pipelines, e.g., LotuS [17], with new approaches continually being developed, e.g., OCToPUS [18] and PEMA [19]
    1. Recently, redox-responsive biomolecules such as phenazines have been used in several electrochemical strategies to interrogate a range of biological activities30,31 and to control gene expression in living cells32,33, where the redox status of the biomolecules could be measured or manipulated by application of electronic potentials
    1. Wittgenstein, Ludwig. Zettel. Edited by Gertrude Elizabeth Margaret Anscombe and Georg Henrik von Wright,. Translated by G. E. M. Anscombe. Second California Paperback Printing. 1967. Reprint, Berkeley and Los Angeles, California: University of California Press, 2007.

      annotation target: urn:x-pdf:15f4a1e48274f28b55eb6f8411c1ff1c

    1. Dise, Jr., Robert L. “Ancient Empires Before Alexander: Course Guidebook.” The Teaching Company, 2009. https://www.thegreatcourses.com/courses/ancient-empires-before-alexander.

      annotation target: urn:x-pdf:1e4821a1d889703f671b666411312026 annotations: https://hypothes.is/users/chrisaldrich?q=urn%3Ax-pdf%3A1e4821a1d889703f671b666411312026

      Ancient Empires before Alexander. DVD. Vol. 3150 The Great Courses: History. Chantilly, VA: The Teaching Company, 2013.https://www.thegreatcourses.com/courses/ancient-empires-before-alexander.

    1. Einblicke in das System der Zettel - Geheimnis um Niklas Luhmanns Zettelkasten, 2015. https://www.youtube.com/watch?v=4veq2i3teVk.

      Watched 2023-03-13

      Mentioned elsewhere, but there's a segment here that he used whatever paper he happened to have around including the receipts from a brewery, tax papers, and even his children's art papers.

    1. Adams, Henry. The Education of Henry Adams: An Autobiography. Edited by Ira B. Nadel. 1907. Reprint, Oxford: Oxford University Press, 1999.

      annotation target: url: urn:x-pdf:36c954cb79cc117f8dbeff1351049bda

    1. Washington, George. “From George Washington to The States, 8 June 1783.” University of Virginia Press, Founders Online, National Archives http://founders.archives.gov/documents/Washington/99-01-02-11404.

      See also copy at: https://americainclass.org/sources/makingrevolution/independence/text1/washingtoncircularstates.pdf


      Referenced by Chapter: Founding Myths by Akhil Reed Amar in Kruse, Kevin M., and Julian E. Zelizer. Myth America: Historians Take On the Biggest Legends and Lies About Our Past. Basic Books, 2023. Location 538-539

      Washington had emphasized the need for such an indivisible union—most dramatically in his initial farewell address, a world-famous circular letter to America’s governors in 1783.

    1. Graeber, David. Pirate Enlightenment, or the Real Libertalia. New York: Farrar, Straus and Giroux, 2023.

      annotation target: url: urn:x-pdf:5a3fb6ca3c4ae2face96d0cb615518fe

    1. Paul, Annie Murphy. The Extended Mind: The Power of Thinking Outside the Brain. Houghton Mifflin Harcourt, 2021, https://www.hmhbooks.com/shop/books/The-Extended-Mind/9780544947580.

      annotation target: urn:x-pdf:37343666363464373933303538336161623732646237386463616662643365313266653032623035373331303031636338326237316361396637343432643431

    1. Scheper, Scott. Antinet Zettelkasten: A Knowledge System That Will Turn You Into a Prolific Reader, Researcher and Writer. Greenlamp, LLC, 2022.

      annotation target: url: urn:x-pdf:614d5b6d353f410da4a46e5eddde997e

    1. Rank, Mark Robert, Lawrence M. Eppard, and Heather E. Bullock. Poorly Understood: What America Gets Wrong About Poverty. Oxford University Press, 2021.

      Reading as part of Dan Allosso's Book Club

      Mostly finished last week, though I managed to miss the last book club meeting for family reasons, but finished out the last few pages tonight.

      annotation target: url: urn:x-pdf:c3701d1c083b974a888f7eaa4009f11f

    1. Piketty, Thomas. A Brief History of Equality. Translated by Steven Rendall. Harvard University Press, 2022. https://www.hup.harvard.edu/catalog.php?isbn=9780674273559.

      annotation target: url: urn:x-pdf:61f07d62a5664b0280bb35ee2d6a69e5

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  3. Feb 2023
    1. A. Hussain, C. R. Black, I. B. Taylor, J. A. Roberts, Soil compaction. A role for ethylene in regulating leaf expansion and shoot growth in tomato? Plant Physiol. 121, 1227–1238 (1999).

      This paper described a link between ethylene levels and plant growth in compacted soil. Plants with higher ethylene production have reduced growth in compacted soil when compared to plants with lower ethylene production.

    2. F. An, Q. Zhao, Y. Ji, W. Li, Z. Jiang, X. Yu, C. Zhang, Y. Han, W. He, Y. Liu, S. Zhang, J. R. Ecker, H. Guo, Ethylene-induced stabilization of ETHYLENE INSENSITIVE3 and EIN3-LIKE1 is mediated by proteasomal degradation of EIN3 binding F-box 1 and 2 that requires EIN2 in Arabidopsis. Plant Cell 22, 2384–2401 (2010).

      This paper investigates the mechanism underlying the increased protein levels of EIN3 and EIL1 in response to ethylene. Increased abundance of EIN3 or EIL1 is used as a reporter of activated ethylene response in the annotated paper.

    3. B. Ma, S.-J. He, K.-X. Duan, C.-C. Yin, H. Chen, C. Yang, Q. Xiong, Q.-X. Song, X. Lu, H.-W. Chen, W.-K. Zhang, T.-G. Lu, S.-Y. Chen, J.-S. Zhang, Identification of rice ethylene-response mutants and characterization of MHZ7/OsEIN2 in distinct ethylene response and yield trait regulation. Mol. Plant 6, 1830–1848 (2013).

      Ma et al. identified and characterized the rice ein2 mutant, which is used frequently as a ethylene-insensitive plant line in the annotated paper.

    4. K. D. Montagu, J. P. Conroy, B. J. Atwell, The position of localized soil compaction determines root and subsequent shoot growth responses. J. Exp. Bot. 52, 2127–2133 (2001).

      This paper provides evidence supporting that roots can sense compacted soil and avoid growth in compacted soil.

    5. J. M. Alonso, T. Hirayama, G. Roman, S. Nourizadeh, J. R. Ecker, EIN2, a bifunctional transducer of ethylene and stress responses in Arabidopsis. Science 284, 2148–2152 (1999).

      Alonso et al. characterized the Arabidopsis ein2 mutant, which is defective in ethylene response. This plant line is also used in many experiments done in the annotated paper.

    6. T. Fujikawa, T. Miyazaki, Effects of bulk density and soil type on the gas diffusion coefficient in repacked and undisturbed soils. Soil Sci. 170, 892–901 (2005).

      This paper investigates factors that affect gas diffusion in soil. It notes that air-filled porosity and bulk density are important factors.

    7. J. Correa, J. A. Postma, M. Watt, T. Wojciechowski, Soil compaction and the architectural plasticity of root systems. J. Exp. Bot. 70, 6019–6034 (2019).

      This paper reviews the effects of soil compaction on soil properties and root traits. It notes that in compacted soil, main effects on roots include decreased root length and increased root diameter.

    1. Lustig, Jason. “‘Mere Chips from His Workshop’: Gotthard Deutsch’s Monumental Card Index of Jewish History.” History of the Human Sciences, vol. 32, no. 3, July 2019, pp. 49–75. SAGE Journals, https://doi.org/10.1177/0952695119830900

      Cross reference preliminary notes from https://journals.sagepub.com/doi/abs/10.1177/0952695119830900

      Finished reading 2023-02-21 13:04:00

      urn:x-pdf:6053dd751da0fa870cad9a71a28882ba

    1. Vandiver, Elizabeth. Classical Mythology. Audible (streaming audio). Vol. 243. The Great Courses: Western Literature. Chantilly, VA: The Teaching Company, 2013.


      Vandiver, Elizabeth. “Classical Mythology: Course Guidebook.” The Teaching Company, 2013. https://www.thegreatcourses.com/courses/classical-mythology.

    1. Hennemann, Alexa. “Ausstellungseröffnung am 4. März: »Zettelkästen. Maschinen der Phantasie« Mit Navid Kermani, Norbert Miller und Meike Werner. Zum 250. Geburtstag von Jean Paul.” Deutches Literatur Archiv Marbach, February 13, 2013. https://www.dla-marbach.de/presse/presse-details/news/pm-11-2013/.

    1. Only then do I start writing. Compared with the labour of making, sorting and arranging notes, this is a relatively speedy business. But it is followed by a much more time-consuming task, that of travelling round the libraries to check the references in my footnotes, only too many of which, thanks to poor handwriting, carelessness and an innate tendency to ‘improve’ what I have read, turn out to be either slightly wrong or taken out of context.That one hit a little close to home. lol.

      We should also acknowledge that when revisiting some of our references again later, we're doing so with a dramatically increased knowledge and context of a particular problem which we may not have had when we first read a piece or took the notes.

      Not many here are writing or talking about these small sorts of insights into learning and writing or generating new work. Perhaps we should do more to acknowledge this hermeneutic cycle in our work?


      reply to u/stjeromeslibido at https://www.reddit.com/r/Zettelkasten/comments/10wj6tv/comment/j7uexbk/?utm_source=reddit&utm_medium=web2x&context=3

    1. Kawakatsu, Mari, Philip S. Chodrow, Nicole Eikmeier, and Daniel B. Larremore. “Emergence of Hierarchy in Networked Endorsement Dynamics.” Proceedings of the National Academy of Sciences 118, no. 16 (April 20, 2021): e2015188118. https://doi.org/10.1073/pnas.2015188118.

      Reading with respect to suggestion of:<br /> DeDeo, Simon, and Elizabeth A. Hobson. “From Equality to Hierarchy.” Proceedings of the National Academy of Sciences 118, no. 21 (May 25, 2021): e2106186118. https://doi.org/10.1073/pnas.2106186118.

      See: related notes at https://hypothes.is/a/doCbOKJYEe27O1tS21jybA

  4. Jan 2023
    1. Goethe, Johann Wolfgang von. Maxims and Reflections. Penguin Classics. Penguin Books, 1998.

      urn:x-pdf:577d8c2ae537c748bc9ae3d1e12ecb38

    1. At least one prominenthistorian of European political thought has indeed suggested thatsome of the democratic forms later developed by Enlightenmentstatesmen in the North Atlantic world most likely were first debutedon pirate ships in the 1680s and 1690s:

      see: Markoff, John. “Where and When Was Democracy Invented?” Comparative Studies in Society and History 41, no. 4 (October 1999): 660–90. https://doi.org/10.1017/S0010417599003096.

    1. Sonia Sotomayor asked herself what new thing did she learn at the end of every day. If she couldn't think of something then she remedied the issue by reading something. (Meltzer2018)

      While it's not known if she wrote notes about what she learned, doing so may have allowed her to accumulate a heck of a zettelkasten practice. Many people mistakenly think that they need to be creating dozens of perfect permanent notes for their zettelkasten every day, but in reality, most historical practitioners only made one or two each day. It's the accumulation and links between them that turn them into a more valuable collection over time.


      Meltzer, Brad. I Am Sonia Sotomayor. Illustrated edition. New York: Dial Books, 2018.

    1. Pirsig, Robert. Lila: An Enquiry into Morals. London: Corgi Books, 1992.

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    1. Giannakis, Georgios K., Christoforo Charalambakis, Franco Montanari, and Antonios Rengakos, eds. Studies in Greek Lexicography. Studies in Greek Lexicography. Trends in Classics - Supplementary Volumes 72. De Gruyter, 2018. https://doi.org/10.1515/9783110622744.

      Skimmed for portions relating to the Bauer zettelkasten

    2. Language contact and contact induced changein the light of the (digital) lexicography ofGreek loanwords in the non-Indo-Europeanlanguages of the Greco-Roman worlds (Coptic,Hebrew/Aramaic, Syriac)

      Katsikadeli, Christina. “Language Contact and Contact Induced Change in the Light of the (Digital) Lexicography of Greek Loanwords in the Non-Indo-European Languages of the Greco-Roman Worlds (Coptic, Hebrew/Aramaic, Syriac).” In Studies in Greek Lexicography, 21–40. Trends in Classics - Supplementary Volumes 72. Boston: De Gruyter, 2018. https://doi.org/10.1515/9783110622744-003.

    1. Emily J. LevineAby Warburg and Weimar Jewish Culture:Navigating Normative Narratives,Counternarratives, and Historical Context

      Levine, Emily J. “Aby Warburg and Weimar Jewish Culture: Navigating Normative Narratives, Counternarratives, and Historical Context.” In The German-Jewish Experience Revisited, edited by Steven E. Aschheim and Vivian Liska, 1st ed., 117–34. Perspectives on Jewish Texts and Contexts 3. De Gruyter, 2015. https://www.jstor.org/stable/j.ctvbkjwr1.10.

    2. Aschheim, Steven E., and Vivian Liska, eds. The German-Jewish Experience Revisited. Perspectives on Jewish Texts and Contexts 3. De Gruyter, 2015. https://doi.org/10.1515/9783110367195.

      Skimmed for references with respect to Aby Warburg and his zettelkasten.

    1. Richter, Tonio Sebastian. “Whatever in the Coptic Language Is Not Greek, Can Wholly Be Considered Ancient Egyptian”: Recent Approaches towards an Integrated View of the Egyptian-Coptic Lexicon.” Journal of the Canadian Society for Coptic Studies. Journal de La Société Canadienne Pour Les Études Coptes 9 (2017): 9–32. https://doi.org/10.11588/propylaeumdok.00004673.

      Skimmed for the specifics I was looking for with respect to Gertrud Bauer's zettelkasten.

    1. Thoreau, Henry David. The Journal: 1837-1861. Edited by Damion Searls. Original edition. New York: NYRB Classics, 2009.

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    1. NOTE-TAKING IN MEDICAL STUDYAND PRACTICE

      “Note-Taking in Medical Study and Practice.” The Phonetic Journal, September 24, 1892, in The Phonetic Journal for the Year of 1892, Volume 51, 609–10.

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    1. Zinger, Oded. “Finding a Fragment in a Pile of Geniza: A Practical Guide to Collections, Editions, and Resources.” Jewish History 32, no. 2 (December 1, 2019): 279–309. https://doi.org/10.1007/s10835-019-09314-6.

      Read on 2023-01-09

      An overview of sources and repositories for fragments from the Cairo Geniza with useful bibliographies for the start of Geniza studies. Of particular interest to me here is the general work of Shelomo Dov Goitein and his 27,000+ card zettelkasten containing his research work on it. There's some great basic description of his collection in general as well as some small specifics on what it entails and some reasonable guide as to how to search it and digital versions at the Princeton Geniza Lab.

    2. Hans Ulrich Gumbrecht, The Powers of Philology: Dynamics of Textual Scholarship(Chicago, 2003), 3

      This looks like an interesting read on philology and textual scholarship.

    3. Benjamin Richler’s Guide to Hebrew Manuscript Collections is the basicreference work for navigating the different libraries and collections of He-brew manuscript collections

      Benjamin Richler, A Guide to Hebrew Manuscript Collections (Jerusalem, 1994), 2nd rev. ed. (Jerusalem, 2014). For an entry on the Geniza, see ibid., 79–81. See also entries for specific libraries and collections.

    1. McCoy, Neal Henry. The Theory of Rings. 1964. Reprint, The Bronx, New York: Chelsea Publishing Company, 1973.

    1. picture

      Books in the photo include:

      • Ahrens first edition of How to Take Smart Notes
      • Moeller, Hans-Georg. The Radical Luhmann. Columbia University Press, 2011.
      • Ann M. Blair's Too Much to Know
      • V.A. Howard and J.H. Barton's Thinking on Paper
      • Alberto Cevolini (ed.) Forgetting Machines: Knowledge Management Evolution in Early Modern Europe
      • James Gleick's The Information: A History, a Theory, a Flood
      • Wright, Alex. Cataloging the World: Paul Otlet and the Birth of the Information Age. Oxford, New York: Oxford University Press, 2014.
      • Frank, Stanley D. Remember Everything You Read: The Evelyn Wood 7-Day Speed Reading & Learning Program. Avon, 1992. https://www.goodreads.com/book/show/35383.Remember_Everything_You_Read

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    1. Digitized copy of the original Secret Memory Techniques

      青水. 新日本古典籍総合データベース. Kyoto, 1771. https://kotenseki.nijl.ac.jp/biblio/100345690/viewer/3

      Seisui. Secret Memory Techniques, Kyoto 1771. Translated by Michael Gurner. Canberra, Australia, 2022.

  5. Dec 2022
  6. Nov 2022
  7. learn-ap-southeast-2-prod-fleet01-xythos.content.blackboardcdn.com learn-ap-southeast-2-prod-fleet01-xythos.content.blackboardcdn.com
    1. Kirschner, Paul, and Carl Hendrick. How Learning Happens: Seminal Works in Educational Psychology and What They Mean in Practice. 1st ed. Routledge, 2020. https://www.routledge.com/How-Learning-Happens-Seminal-Works-in-Educational-Psychology-and-What-They/Kirschner-Hendrick/p/book/9780367184575.

      The Ten Deadly Sins of Education by @P_A_Kirschner & @C_Hendrick <br><br>Multitasking was v interesting to read about in their book! Learning pyramid & styles still hang around, sometimes students find out about learning styles & believe it to be true so it's important to bust myths! pic.twitter.com/Kx5GpsehGm

      — Kate Jones (@KateJones_teach) November 10, 2022
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    1. Abrams, Douglas. “Historian Barbara W. Tuchman on the ‘Art of Writing’ (Part II).” Precedent 9, no. 1 (January 1, 2015): 18–21. http://ssrn.com/abstract=2581159

      Interesting view of writing and a short collection of reasonable writing advice. Perhaps a bit too much focus on other writers given the title of the piece. Not sure it was all brought together in the nice bow it may have otherwise had, but interesting nonetheless.

    1. <small><cite class='h-cite via'> <span class='p-author h-card'>atomicnotes </span> in Death by Zettelkasten: a haunting story of information overload! : Zettelkasten (<time class='dt-published'>11/01/2022 12:03:47</time>)</cite></small>

      T., T. F., A. F. P., E. R. A., H. E. E., R. C., E. L. W., F. J. C. H., and E. J. C. “Short Notices.” History 8, no. 31 (1923): 231–37.

  8. Oct 2022
    1. Pomeroy, Earl. “Frederic L. Paxson and His Approach to History.” The Mississippi Valley Historical Review 39, no. 4 (1953): 673–92. https://doi.org/10.2307/1895394

      read on 2022-10-30 - 10-31

    2. s notes accumulated, hefiled them under new and subsidiary headings, with cross-references(on the index card) to related headings, which might be numerousand many years remote.
    1. Thomas, Keith. “Diary: Working Methods.” London Review of Books, June 10, 2010. https://www.lrb.co.uk/the-paper/v32/n11/keith-thomas/diary.

      Historian Keith Thomas talks about his methods of note taking and work as a historian. A method which falls into the tradition of commonplacing and zettelkasten, though his was in note taking and excerpting onto slips which he kept in envelopes instead of notebooks or a card index.

    1. Noy, Natalya F, and Deborah L McGuinness. “Ontology Development 101: A Guide to Creating Your First Ontology,” 2001, 25.

      suggested via:

      New @tana_inc folks seem hungry for in-depth books on ontologies & schemas.<br>Initial reaction was... books are overkill? There's not much to know? Just google it? But then tried googling. And it is *noisy* and poorly curated out there.<br><br>A few recommendations:

      — Maggie Appleton (@Mappletons) October 21, 2022
      <script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
    1. Samoyault, Tiphaine, and Jonathan Culler. Barthes: A Biography. Translated by Andrew Brown, 1st edition, Polity, 2017.

    1. He was especially enamored with cross-references, which weremarked in red type;

      Deutch's zettelkasten is well cross-referenced and he showed a preference for doing these in red type.

    1. Sophie Stévance and Catrina Flint de Médicis. “Marcel Duchamp’s Musical Secret Boxed in the Tradition of the Real: A New Instrumental Paradigm.” Perspectives of New Music, vol. 45, no. 2, 2007, pp. 150–70. https://www.jstor.org/stable/25164661

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    1. Cattell, J. McKeen. “Methods for a Card Index.” Science 10, no. 247 (1899): 419–20.


      Columbia professor of psychology calls for the creation of a card index of references to reviews and abstracts for areas of research. Columbia was apparently doing this in 1899 for the psychology department.

      What happened to this effort? How similar was it to the system of advertising cards for books in Germany in the early 1930s described by Heyde?

    1. Rotzel, Grace. “Card File.” The English Journal 6, no. 10 (December 1917): 691–691. https://doi.org/10.2307/801092.

      Follow up note to prior article indicating some sorter term benefits of filing student work and taking notes on it for helping to create improvement over time.

    1. Sutherland, Lois Gilbert. “The English Teacher’s Card File.” The English Journal 6, no. 2 (1917): 111–12. https://doi.org/10.2307/801508.


      Lois Gilbert Sutherland suggests using a card index system for multiple uses in the classroom including notes, administration, and general productivity.

      There are so many parallels from this to how people are using platforms like Obsidian, Roam Research, and Notion in 2022.

    1. Breitenbach, H. P. “The Card Index for Teachers.” The School Review 20, no. 4 (1912): 271–72.


      Apparently in 1912, the card index was little known to teachers... this isn't the sort of use case I was expecting here...

      The general gist of this short note is an encouraging one to suggest that instead of traditional grade books, which are still used heavily in 2022, teachers should use rolodex like cards for keeping attendance and notes on a student's progress.

      Presumably this never caught on. While some elementary teachers still use older paper gradebooks, many others have transferred to digital LMS platforms.

    1. Goutor, Jacques. The Card-File System of Note-Taking. Approaching Ontario’s Past 3. Toronto: Ontario Historical Society, 1980. http://archive.org/details/cardfilesystemof0000gout

    2. Goutor recommends cross-referencing or linking ideas between cards "at the bottom of the note-card, as soon as the note itself is completed." Links shouldn't be trusted to memory and should be noted as soon as possible. Further he recommends periodically sorting through cards and adding adding additional cross references as one ruminates. While he indicates that cross-referencing may seem "cumbersome at first sight, experience will show that it enhances the usefulness of the card file when the time comes to retrieve the information it contains." (p32-33)

      Beyond this he doesn't indicate any additional benefits of creativity or serendipity that have been seen in similar treatises.

    3. Goutor breaks down the post-processing of notes into two phases: "coding" (tagging or categorization) and "cross-referencing". (p31).

    4. On page 24, Goutor cross references one note to another, but only does so at the level of the bigger book or text and not at the level of the individual notes themselves.

      Was this on purpose?

  9. Sep 2022
    1. Sword, Helen. “‘Write Every Day!’: A Mantra Dismantled.” International Journal for Academic Development 21, no. 4 (October 1, 2016): 312–22. https://doi.org/10.1080/1360144X.2016.1210153

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    1. IntertextsAs Jonathan Culler writes: “Liter-ary works are not to be consideredautonomous entities, ‘organicwholes,’ but as intertextual con-structs: sequences which havemeaning in relation to other textswhich they take up, cite, parody,refute, or generally transform.” ThePursuit of Signs (Ithaca, NY: CornelUniversity Press, 1981), 38.

      Throughout Rewriting: How To Do Things With Texts (Utah State University Press, 2006) Joseph Harris presents highlighted sidebar presentations he labels "Intertexts".

      They simultaneously serve the functions of footnotes, references, (pseudo-)pull quotes, and conversation with his own text. It's not frequently seen this way, but these intertexts serve the function of presenting his annotations of his own text to model these sorts of annotations and intertextuality which he hopes the reader (student) to be able to perform themselves. He explicitly places them in a visually forward position within the text rather than hiding them in the pages' footnotes or end notes where the audience he is addressing can't possibly miss them. In fact, the reader will be drawn to them above other parts of the text when doing a cursory flip through the book upon picking it up, a fact that underlines their importance in his book's thesis.


      This really is a fantastic example of the marriage of form and function as well as modelling behavior.


      cc: @remikalir

    2. Harris, Joseph. Rewriting: How To Do Things With Texts. Logan: Utah State University Press, 2006. https://muse.jhu.edu/book/9248

    1. Courtney, Jennifer Pooler. “A Review of Rewriting: How to Do Things with Texts.” The Journal of Effective Teaching 7, no. 1 (2007): 74–77.

      Review of: Harris, Joseph. Rewriting: How To Do Things With Texts. Logan: Utah State University Press, 2006. https://muse.jhu.edu/book/9248.

    1. Sword, Helen. “‘Write Every Day!’: A Mantra Dismantled.” International Journal for Academic Development 21, no. 4 (October 1, 2016): 312–22. https://doi.org/10.1080/1360144X.2016.1210153.

      Preliminary thoughts prior to reading:<br /> What advice does Boice give? Is he following in the commonplace or zettelkasten traditions? Is the writing ever day he's talking about really progressive note taking? Is this being misunderstood?

      Compare this to the incremental work suggested by Ahrens (2017).

      Is there a particular delineation between writing for academic research and fiction writing which can be wholly different endeavors from a structural point of view? I see citations of many fiction names here.

      Cross reference: Throw Mama from the Train quote

      A writer writes, always.

    1. Bjorn, Genevive A., Laura Quaynor, and Adam J. Burgasser. “Reading Research for Writing: Co-Constructing Core Skills Using Primary Literature.” Impacting Education: Journal on Transforming Professional Practice 7, no. 1 (January 14, 2022): 47–58. https://doi.org/10.5195/ie.2022.237

      Found via:

      #AcademicTwitter I survived crushing reading loads in grad school by creating a straightforward method for analyzing primary literature, called #CERIC. Saved my sanity and improved my focus. @PhDVoice. Here’s the free paper - https://t.co/YehbLQNEqJ

      — Genevive Bjorn (@GeneviveBjorn) September 11, 2022
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      I'm curious how this is similar to the traditions of commonplace books and zettelkasten from a historical perspective.

    1. Eco, Umberto. How to Write a Thesis. Translated by Caterina Mongiat Farina and Geoff Farina. Cambridge, MA, USA: MIT Press, 2015. https://mitpress.mit.edu/books/how-write-thesis

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  10. Aug 2022
    1. Each type of index card should have a dif-ferent color, and should include in the top right corner abbre-viations that cross-reference one series of cards to another,and to the general plan. The result is something majestic.

      Finally a concrete statement about actively cross-linking ideas on note cards together!

    1. German publishers send out so-called book cards to book shops along with their newreleases. On them, bibliographic information is printed. Those book cards are also in postcardsize, i.e. A6, and their textual structure allows for them to be included in the reference filebox.

      Automatic reference cards!

      When did they stop doing this!!!

    1. Allosso, Dan, and S. F. Allosso. How to Make Notes and Write. Minnesota State Pressbooks, 2022. https://minnstate.pressbooks.pub/write/.

      Annotatable .pdf copy for Hypothes.is: https://docdrop.org/pdf/How-to-Make-Notes-and-Write---Allosso-Dan-jzdq8.pdf/

      Nota Bene:

      These annotations are of a an early pre-release draft of the text. One ought to download the most recent revised/final/official draft at https://minnstate.pressbooks.pub/write/.

    1. Jones, Christopher P. “Zettelkasten.” Edited by R. Merkelbach and J. Stauber. The Classical Review 50, no. 1 (2000): 170–72.

      Nothing at all about the titular word zettelkasten, but rather a negative review of a book on inscriptions...

    1. Fickert, Kevin-Steven. “Die Geschichte des Zettelkatalogs : eine historisch-kritische Betrachtung eines Verzeichnismediums und seiner Regelwerke.” Fachhochschule Stuttgart Hochschule der Medien, 2003. https://hdms.bsz-bw.de/frontdoor/index/index/docId/141

      via Ton Zijlstra

    1. Allosso, Dan. US History and Primary Source Anthology, Vol. 1. 2 vols. Minnesota State Pressbooks, 2022. https://minnstate.pressbooks.pub/ushistory1/

    1. Dutcher, George Matthew. “Directions and Suggestions for the Writing of Essays or Theses in History.” Historical Outlook 22, no. 7 (November 1, 1931): 329–38. https://doi.org/10.1080/21552983.1931.10114595

    2. (see paragraph 28)

      an example within this essay of a cross reference from one note to another showing the potential linkages of individual notes within one's own slipbox.

    3. the slips by the topicalheadings. Guide cards are useful to gdicate the several head-ings and subheadings. Under each heading classif the slipsin writing, discarding any that may not prove useful andmaking cross references for notes which may be needed foruse in more than one lace. This classification will reveal,almost automatically, wiere there are deficiencies in the ma-terials collected which should be remedied. The completedand classified collection of notes then becomes the basis ofcomposition.

      missing some textual context here for full quote...

      Dutcher is recommending arranging notes and cards by topical headings in a commonplace sort of method. He does recommend a sub-arrangement of placing them in logical order for one's writing however. He goes even further and indicates one may "make cross references for notes which may be needed for use in more than one place." Which provides an early indication of linking or cross linking cards to multiple places within in one's card index. (Has this cross referencing (linking) idea appeared in the literature specifically before, or is this an early instantiation of this idea?)

    1. Scheper, Scott P. Antinet Zettelkasten: The Secret Knowledge Development System Evolved By History’s Greatest Minds. Advanced Reader Copy. Greenlamp, 2022.

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    1. Historical Hypermedia: An Alternative History of the Semantic Web and Web 2.0 and Implications for e-Research. .mp3. Berkeley School of Information Regents’ Lecture. UC Berkeley School of Information, 2010. https://archive.org/details/podcast_uc-berkeley-school-informat_historical-hypermedia-an-alte_1000088371512. archive.org.

      https://www.ischool.berkeley.edu/events/2010/historical-hypermedia-alternative-history-semantic-web-and-web-20-and-implications-e.

      https://www.ischool.berkeley.edu/sites/default/files/audio/2010-10-20-vandenheuvel_0.mp3

      headshot of Charles van den Heuvel

      Interface as Thing - book on Paul Otlet (not released, though he said he was working on it)

      • W. Boyd Rayward 1994 expert on Otlet
      • Otlet on annotation, visualization, of text
      • TBL married internet and hypertext (ideas have sex)
      • V. Bush As We May Think - crosslinks between microfilms, not in a computer context
      • Ted Nelson 1965, hypermedia

      t=540

      • Michael Buckland book about machine developed by Emanuel Goldberg antecedent to memex
      • Emanuel Goldberg and His Knowledge Machine: Information, Invention, and Political Forces (New Directions in Information Management) by Michael Buckland (Libraries Unlimited, (March 31, 2006)
      • Otlet and Goldsmith were precursors as well

      four figures in his research: - Patrick Gattis - biologist, architect, diagrams of knowledge, metaphorical use of architecture; classification - Paul Otlet, Brussels born - Wilhelm Ostwalt - nobel prize in chemistry - Otto Neurath, philosophher, designer of isotype

      Paul Otlet

      Otlet was interested in both the physical as well as the intangible aspects of the Mundaneum including as an idea, an institution, method, body of work, building, and as a network.<br /> (#t=1020)

      Early iPhone diagram?!?

      (roughly) armchair to do the things in the web of life (Nelson quote) (get full quote and source for use) (circa 19:30)

      compares Otlet to TBL


      Michael Buckland 1991 <s>internet of things</s> coinage - did I hear this correctly? https://en.wikipedia.org/wiki/Internet_of_things lists different coinages

      Turns out it was "information as thing"<br /> See: https://hypothes.is/a/kXIjaBaOEe2MEi8Fav6QsA


      sugane brierre and otlet<br /> "everything can be in a document"<br /> importance of evidence


      The idea of evidence implies a passiveness. For evidence to be useful then, one has to actively do something with it, use it for comparison or analysis with other facts, knowledge, or evidence for it to become useful.


      transformation of sound into writing<br /> movement of pieces at will to create a new combination of facts - combinatorial creativity idea here. (circa 27:30 and again at 29:00)<br /> not just efficiency but improvement and purification of humanity

      put things on system cards and put them into new orders<br /> breaking things down into smaller pieces, whether books or index cards....

      Otlet doesn't use the word interfaces, but makes these with language and annotations that existed at the time. (32:00)

      Otlet created diagrams and images to expand his ideas

      Otlet used octagonal index cards to create extra edges to connect them together by topic. This created more complex trees of knowledge beyond the four sides of standard index cards. (diagram referenced, but not contained in the lecture)

      Otlet is interested in the "materialization of knowledge": how to transfer idea into an object. (How does this related to mnemonic devices for daily use? How does it relate to broader material culture?)

      Otlet inspired by work of Herbert Spencer

      space an time are forms of thought, I hold myself that they are forms of things. (get full quote and source) from spencer influence of Plato's forms here?

      Otlet visualization of information (38:20)

      S. R. Ranganathan may have had these ideas about visualization too

      atomization of knowledge; atomist approach 19th century examples:S. R. Ranganathan, Wilson, Otlet, Richardson, (atomic notes are NOT new either...) (39:40)

      Otlet creates interfaces to the world - time with cyclic representation - space - moving cube along time and space axes as well as levels of detail - comparison to Ted Nelson and zoomable screens even though Ted Nelson didn't have screens, but simulated them in paper - globes

      Katie Berner - semantic web; claims that reporting a scholarly result won't be a paper, but a nugget of information that links to other portions of the network of knowledge.<br /> (so not just one's own system, but the global commons system)

      Mention of Open Annotation (Consortium) Collaboration:<br /> - Jane Hunter, University of Australia Brisbane & Queensland<br /> - Tim Cole, University of Urbana Champaign<br /> - Herbert Van de Sompel, Los Alamos National Laboratory annotations of various media<br /> see:<br /> - https://www.researchgate.net/publication/311366469_The_Open_Annotation_Collaboration_A_Data_Model_to_Support_Sharing_and_Interoperability_of_Scholarly_Annotations - http://www.openannotation.org/spec/core/20130205/index.html - http://www.openannotation.org/PhaseIII_Team.html

      trust must be put into the system for it to work

      coloration of the provenance of links goes back to Otlet (~52:00)

      Creativity is the friction of the attention space at the moments when the structural blocks are grinding against one another the hardest. —Randall Collins (1998) The sociology of philosophers. Cambridge, MA: Harvard University Press (p.76)

  11. Jul 2022
    1. Bernheim, Ernst. Lehrbuch der historischen Methode und der Geschichtsphilosophie: mit Nachweis der wichtigsten Quellen und Hilfsmittel zum Studium der Geschichte. Leipzig : Duncker & Humblot, 1908. http://archive.org/details/lehrbuchderhist03berngoog.

      Title translation: Textbook of the historical method and the philosophy of history : with reference to the most important sources and aids for the study of history

      A copy of the original 1889 copy can be found at https://digital.ub.uni-leipzig.de/mirador/index.php

    1. Peirce, Charles Sanders. “How to Make Our Ideas Clear.” Popular Science Monthly 12, no. Jan. (January 1878): 286–302.

      see also: - https://cspeirce.omeka.net/items/show/3

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    Annotators

    1. Kidd, Alison. “The Marks Are on the Knowledge Worker.” In Proceedings of the SIGCHI Conference on Human Factors in Computing Systems, 186–91. CHI ’94. New York, NY, USA: Association for Computing Machinery, 1994. https://doi.org/10.1145/191666.191740.

  12. Local file Local file
    1. Orwell, George. Nineteen eighty-four. (Mariner, 2008) ISBN 978-0-15-603584-2

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  13. Jun 2022
    1. First!


      What I really mean is: <br /> I'm bookmarking this for my digital notebook https://journals.sagepub.com/doi/abs/10.1177/1474022220915128

      “Something fruitful for all of us”: Social annotation as a signature pedagogy for literature education<br /> Jeffrey Clapp, Matthew DeCoursey, Sze Wah Sarah Lee, et al.<br /> First Published March 29, 2020<br /> https://doi.org/10.1177/1474022220915128

      There's always something suspicious about journal articles about social annotation when there's no public sign of social annotation on them.

      We've remedied this problem...

    1. The Reading Brain in the Digital Age: The Science of Paper versus Screens https://www.scientificamerican.com/article/reading-paper-screens/ by Ferris Jabr Scientific American 2013-04-11 A good overview of reading practices, reading user interfaces, and research literature relevant to it. Lots of abstracts from research which I ought to look at more closely, and thus didn't make note of as much as I'd rather delve into the primary sources.

      Most of the research cited here is preliminary to early e-reading devices and has small sample sizes. Better would be to see how subsequent studies have fared with larger and more diverse groups.

    1. [26]

      There should be a total of 19 references, but this version has 26 due to duplicate references. I have fixed this in a newer version.

    2. [3] - [9], [11] - [17]

      There should be a total of 19 references, but this version has 26 due to duplicate references. I have fixed this in a newer version.

  14. May 2022
    1. Brine, Kevin R., Ellen Gruber Garvey, Lisa M. Gitelman, Steven J. Jackson, Virginia Jackson, Markus Krajewski, Mary Poovey, et al. “Raw Data” Is an Oxymoron. Edited by Lisa M. Gitelman. Infrastructures. MIT Press, 2013. https://mitpress.mit.edu/books/raw-data-oxymoron.

    1. https://interactions.acm.org/archive/view/may-june-2011/between-the-lines-the-social-life-of-marginalia1

      Danzico, Liz. “Between the Lines: The Social Life of Marginalia.” Interactions 18, no. 3 (May 2011): 12–13. https://doi.org/10.1145/1962438.1962443.

      A short synopsis article about marginalia with some simple questions. She's read a fair amount in the space from the 2010s given references, but little I hadn't encountered before. The Robin Sloan tidbit was interesting as well as the etymology of marginalia, though these will need better references.

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      Accurate climate models require a thorough understanding of how much light is reflected by clouds and the Earth's surface. These studies shed light on how land cover and clouds impact the global energy balance.

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      Experimental and theoretical investigations of the effect of aerosols, particularly those released during volcanic eruptions, have allowed for the reliable modeling of cooling periods throughout history.

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      The development of box diffusion models provided a useful, tunable way to represent the exchange of heat between the atmosphere and ocean in climate models.

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      Experimental studies are vital to the construction of accurate climate models. These studies include measurements of the absorption of radiation by gases, aerosols, and the Earth's surface to supply parameters for programs that predict energy flows through the atmosphere.

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      Hansen, Manabe, and others performed extensive work creating models to represent the atmosphere and predict its response to the emission of greenhouse gases.

    1. T. J. Johnson, D. Ross, L. E. Locascio, Anal. Chem. 10.1021/ac010895d.

      T.J. Johnson and colleagues studied several mixer designs by fabricating a series of slanted wells within a microchannel using a UV excimer laser. These wells generated a high degree of lateral transport within the channel to help induce rapid mixing between two confluent streams undergoing electroosmotic flow.

    2. 11. Jones S. W., Thomas O. M., Aref H., J. Fluid Mech. 209, 335 (1989).

      The authors demonstrated chaotic mixing in a twisted pipe with a circular cross-section.