849 Matching Annotations
  1. Aug 2023
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome-Wide SNP and Indel Discovery in Abaca (Musa textilis Née) and among Other Musa spp. for Abaca Genetic Resources Management
    1
    1. scibot 01 Aug 2023
      RRID:SCR_002105

      DOI: 10.3390/cimb45070365

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    ncbi.nlm.nih.gov/pmc/articles/PMC10377871/
  3. Jul 2023
  4. www.sciencedirect.com www.sciencedirect.com
    The stability of the myelinating oligodendrocyte transcriptome is regulated by the nuclear lamina
    1
    1. scibot 29 Jul 2023
      RRID:SCR_002105

      DOI: 10.1016/j.celrep.2023.112848

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    sciencedirect.com/science/article/pii/S2211124723008598
  5. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A new haplotype-resolved turkey genome to enable turkey genetics and genomics research
    1
    1. scibot 25 Jul 2023
      RRID:SCR_002105

      DOI: 10.1093/gigascience/giad051

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    ncbi.nlm.nih.gov/pmc/articles/PMC10360393/
  6. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A network-based approach reveals long non-coding RNAs associated with disease activity in lupus nephritis: key pathways for flare and potential biomarkers to be used as liquid biopsies
    1
    1. scibot 21 Jul 2023
      SCR_002105

      DOI: 10.3389/fimmu.2023.1203848

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    ncbi.nlm.nih.gov/pmc/articles/PMC10355154/
  7. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Resolving the pathogenesis of anaplastic Wilms tumors through spatial mapping of cancer cell evolution
    1
    1. scibot 18 Jul 2023
      RRID:SCR_002105

      DOI: 10.1158/1078-0432.CCR-23-0311

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    ncbi.nlm.nih.gov/pmc/articles/PMC10345961/
  8. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Prenatal Δ9-tetrahydrocannabinol exposure in males leads to motivational disturbances related to striatal epigenetic dysregulation
    1
    1. scibot 18 Jul 2023
      RRID:SCR_002105

      DOI: 10.1016/j.biopsych.2021.09.017

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    ncbi.nlm.nih.gov/pmc/articles/PMC8957623/
  9. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    High-sensitivity mutation analysis of cell-free DNA for disease monitoring in endometrial cancer
    1
    1. scibot 18 Jul 2023
      RRID:SCR_002105

      DOI: 10.1158/1078-0432.CCR-22-1134

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    ncbi.nlm.nih.gov/pmc/articles/PMC9852004/
  10. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Low-level repressive histone marks fine-tune gene transcription in neural stem cells
    1
    1. scibot 15 Jul 2023
      RRID:SCR_002105

      DOI: 10.7554/eLife.86127

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    ncbi.nlm.nih.gov/pmc/articles/PMC10344426/
  11. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Antigen presentation by clonally diverse CXCR5+ B cells to CD4 and CD8 T cells is associated with durable response to immune checkpoint inhibitors
    1
    1. scibot 12 Jul 2023
      SCR_002105

      DOI: 10.3389/fimmu.2023.1176994

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    ncbi.nlm.nih.gov/pmc/articles/PMC10330698/
  12. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An initial genomic blueprint of the healthy human oesophageal microbiome
    1
    1. scibot 08 Jul 2023
      RRID:SCR_002105

      DOI: 10.1099/acmi.0.000558.v3

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    ncbi.nlm.nih.gov/pmc/articles/PMC10323806/
  13. www.sciencedirect.com www.sciencedirect.com
    CRIC-seq protocol for in situ profiling of proximal RNA-RNA contacts associated with RNA-binding proteins
    1
    1. scibot 08 Jul 2023
      RRID:SCR_002105

      DOI: 10.1016/j.xpro.2023.102401

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    sciencedirect.com/science/article/pii/S2666166723003684
  14. 52.53.155.43 52.53.155.43
    ccr-23-0311 (1)-html.html
    2
    1. scibot 08 Jul 2023
      RRID:SCR_002105

      DOI: 10.1158/1078-0432.ccr-23-0311

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    2. scibot 02 Jul 2023
      RRID:SCR_002105

      DOI: 10.1158/1078-0432.ccr-23-0311

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    52.53.155.43/6ec90d6b71d2c5f7b6e8dbeb4e11e3fe28098437/ccr-23-0311-html.html
  15. 52.53.155.43 52.53.155.43
    can-22-3173-html.html
    1
    1. scibot 08 Jul 2023
      RRID:SCR_002105

      DOI: 10.1158/0008-5472.can-22-3173

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    52.53.155.43/7a07162d3285902b20a1a359628fdd8826284ee8/can-22-3173-html.html
  16. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the hybrid grapevine Vitis ‘Chambourcin’
    1
    1. scibot 06 Jul 2023
      SCR_002105

      DOI: 10.46471/gigabyte.84

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    ncbi.nlm.nih.gov/pmc/articles/PMC10318349/
  17. Jun 2023
  18. 52.53.155.43 52.53.155.43
    can-22-3173-html.html
    1
    1. scibot 30 Jun 2023
      RRID:SCR_002105

      DOI: 10.1158/0008-5472.can-22-3173

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    52.53.155.43/7a07162d3285902b20a1a359628fdd8826284ee8/can-22-3173-html.html
  19. www.biorxiv.org www.biorxiv.org
    Divergence of TORC1-mediated Stress Response Leads to Novel Acquired Stress Resistance in a Pathogenic Yeast
    1
    1. scibot 26 Jun 2023
      RRID:SCR_002105

      DOI: 10.1101/2023.06.20.545716

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    biorxiv.org/content/10.1101/2023.06.20.545716v1
  20. europepmc.org europepmc.org
    F1000Research Article: Integrative transcriptomic and proteomic study of Zika viral infection reveals potential mechanisms for oncolytic therapy in neuroblastoma.
    1
    1. scibot 24 Jun 2023
      RRID:SCR_002105

      DOI: 10.12688/f1000research.132627.1

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    europepmc.org/article/ppr/ppr679275
  21. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multi-omic longitudinal study reveals immune correlates of clinical course among hospitalized COVID-19 patients
    1
    1. scibot 21 Jun 2023
      SCR_002105

      DOI: 10.1016/j.xcrm.2023.101079

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    ncbi.nlm.nih.gov/pmc/articles/PMC10203880/
  22. 52.53.155.43 52.53.155.43
    1-s2.0-S2666379123001982-main-html.html
    1
    1. scibot 16 Jun 2023
      SCR_002105

      DOI: 10.1016/j.xcrm.2023.101079

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    52.53.155.43/5962ea7ac5a892fc17bc1e88a593a1be00907b4e/1-s2.0-S2666379123001982-main-html.html
  23. aacrjournals.org aacrjournals.org
    (R)-2-hydroxyglutarate inhibits KDM5 histone lysine demethylases to drive transformation in IDH-mutant cancers
    1
    1. scibot 10 Jun 2023
      SCR_002105

      DOI: 10.1158/2159-8290.CD-22-0825

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    aacrjournals.org/cancerdiscovery/article/13/6/1478/726967/R-2-Hydroxyglutarate-Inhibits-KDM5-Histone-Lysine
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Activating an Adaptive Immune Response with a Telomerase-mediated Telomere Targeting Therapeutic in Hepatocellular Carcinoma
    1
    1. scibot 03 Jun 2023
      RRID:SCR_002105

      DOI: 10.1158/1535-7163.MCT-23-0039

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    ncbi.nlm.nih.gov/pmc/articles/PMC10233358/
  25. aacrjournals.org aacrjournals.org
    Comprehensive DNA methylation analysis indicates that pancreatic intraepithelial neoplasia lesions are acinar-derived and epigenetically primed for carcinogenesis
    1
    1. scibot 03 Jun 2023
      RRID:SCR_002105

      DOI: 10.1158/0008-5472.CAN-22-4052

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    aacrjournals.org/cancerres/article/83/11/1905/726442/Comprehensive-DNA-Methylation-Analysis-Indicates
  26. aacrjournals.org aacrjournals.org
    Enhanced glutaminolysis drives hypoxia-induced chemoresistance in pancreatic cancer
    1
    1. scibot 03 Jun 2023
      RRID:SCR_002105

      DOI: 10.1158/0008-5472.CAN-22-2045

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    aacrjournals.org/cancerres/article/83/5/735/716680/Enhanced-Glutaminolysis-Drives-Hypoxia-Induced
  27. www.sciencedirect.com www.sciencedirect.com
    5-Azacytidine- and retinoic-acid-induced reprogramming of DCCs into dormancy suppresses metastasis via restored TGF-β-SMAD4 signaling
    1
    1. scibot 02 Jun 2023
      RRID:SCR_002105

      DOI: 10.1016/j.celrep.2023.112560

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    sciencedirect.com/science/article/pii/S2211124723005715
  28. 52.53.155.43 52.53.155.43
    mct-23-0039-html.html
    1
    1. scibot 01 Jun 2023
      RRID:SCR_002105

      DOI: 10.1158/1535-7163.mct-23-0039

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    52.53.155.43/2e399e27445b3309b8dca3d6b15c5701e7dc6c5e/mct-23-0039-html.html
  29. May 2023
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evolution of Resistance to Irinotecan in Cancer Cells Involves Generation of Topoisomerase-Guided Mutations in Non-Coding Genome That Reduce the Chances of DNA Breaks
    1
    1. scibot 31 May 2023
      RRID:SCR_002105

      DOI: 10.3390/ijms24108717

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    ncbi.nlm.nih.gov/pmc/articles/PMC10218574/
  31. 52.53.155.43 52.53.155.43
    bqad083-html.html
    1
    1. scibot 27 May 2023
      RRID:SCR_002105

      DOI: 10.1210/endocr/bqad083

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    52.53.155.43/c24202ba5c1e462601cd87eadcb0082575e1cb0e/bqad083-html.html
  32. www.sciencedirect.com www.sciencedirect.com
    Transcriptional dynamics of delaminating neuroblasts in the mouse otic vesicle
    1
    1. scibot 25 May 2023
      SCR_002105

      DOI: 10.1016/j.celrep.2023.112545

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    sciencedirect.com/science/article/pii/S2211124723005569
  33. www.biorxiv.org www.biorxiv.org
    Transition from Transient DNA Rereplication to Inherited Gene Amplification Following Prolonged Environmental Stress
    1
    1. scibot 18 May 2023
      RRID:SCR_002105

      DOI: 10.1101/2023.05.08.539886

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    biorxiv.org/content/10.1101/2023.05.08.539886v1
  34. www.nature.com www.nature.com
    Germline modifiers of the tumor immune microenvironment implicate drivers of cancer risk and immunotherapy response
    1
    1. scibot 13 May 2023
      RRID:SCR_002105

      DOI: 10.1038/s41467-023-38271-5

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    nature.com/articles/s41467-023-38271-5
  35. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Mitogenome evidence shows two radiation events and dispersals of matrilineal ancestry from northern coastal China to the Americas and Japan
    1
    1. scibot 10 May 2023
      RRID:SCR_002105

      DOI: 10.1016/j.celrep.2023.112413

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    pubmed.ncbi.nlm.nih.gov/37164007/
  36. onlinelibrary.wiley.com onlinelibrary.wiley.com
    KMT2D Deficiency Promotes Myeloid Leukemias which Is Vulnerable to Ribosome Biogenesis Inhibition
    1
    1. scibot 10 May 2023
      RRID:SCR_002105

      DOI: 10.1002/advs.202206098

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    onlinelibrary.wiley.com/doi/10.1002/advs.202206098
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A workflow reproducibility scale for automatic validation of biological interpretation results
    1
    1. scibot 09 May 2023
      RRID:SCR_002105

      DOI: 10.1093/gigascience/giad031

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    ncbi.nlm.nih.gov/pmc/articles/PMC10164546/
  38. academic.oup.com academic.oup.com
    A high-quality, long-read genome assembly of the whitelined sphinx moth (Lepidoptera: Sphingidae: Hyles lineata) shows highly conserved melanin synthesis pathway genes
    1
    1. scibot 06 May 2023
      RRID:SCR_002105

      DOI: 10.1093/g3journal/jkad090

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    academic.oup.com/g3journal/advance-article/doi/10.1093/g3journal/jkad090/7147210
  39. www.biorxiv.org www.biorxiv.org
    L1 retrotransposons drive human neuronal transcriptome complexity and functional diversification
    1
    1. scibot 04 May 2023
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      DOI: 10.1101/2023.03.04.531072

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    biorxiv.org/content/10.1101/2023.03.04.531072v1
  40. www.biorxiv.org www.biorxiv.org
    Bcl-xL is translocated to the nucleus via CtBP2 to epigenetically promote metastasis
    1
    1. scibot 04 May 2023
      RRID:SCR_002105

      DOI: 10.1101/2023.04.26.538373

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    biorxiv.org/content/10.1101/2023.04.26.538373v1
  41. www.sciencedirect.com www.sciencedirect.com
    Functional interplay between Mediator and RSC chromatin remodeling complex controls nucleosome-depleted region maintenance at promoters
    1
    1. scibot 03 May 2023
      RRID:SCR_002105

      DOI: 10.1016/j.celrep.2023.112465

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    sciencedirect.com/science/article/pii/S221112472300476X
  42. Apr 2023
  43. www.sciencedirect.com www.sciencedirect.com
    A hyper-quiescent chromatin state formed during aging is reversed by regeneration
    1
    1. scibot 29 Apr 2023
      RRID:SCR_002105

      DOI: 10.1016/j.molcel.2023.04.005

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    sciencedirect.com/science/article/pii/S1097276523002496
  44. www.sciencedirect.com www.sciencedirect.com
    Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population
    1
    1. scibot 29 Apr 2023
      RRID:SCR_002105

      DOI: 10.1016/j.cub.2023.04.011

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    sciencedirect.com/science/article/pii/S0960982223004591
  45. www.sciencedirect.com www.sciencedirect.com
    Comprehensive epigenomic profiling reveals the extent of disease-specific chromatin states and informs target discovery in ankylosing spondylitis
    1
    1. scibot 26 Apr 2023
      RRID:SCR_002105

      DOI: 10.1016/j.xgen.2023.100306

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    Novel enhancers conferring compensatory transcriptional regulation of Nkx2-5 in heart development
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    Splicing accuracy varies across human introns, tissues and age
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    INTAC endonuclease and phosphatase modules differentially regulate transcription by RNA polymerase II
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    Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia
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    Complementary gene regulation by NRF1 and NRF2 protects against hepatic cholesterol overload
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    Molecular mechanisms underlying hematophagia revealed by comparative analyses of leech genomes
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    Structurally Complex Osteosarcoma Genomes Exhibit Limited Heterogeneity within Individual Tumors and across Evolutionary Time
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    GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
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    A chromosome-scale high-contiguity genome assembly of the cheetah (Acinonyx jubatus)
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    Histone phosphorylation integrates the hepatic glucagon-PKA-CREB gluconeogenesis program in response to fasting
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  56. Mar 2023
  57. academic.oup.com academic.oup.com
    Resequencing of a Pekin duck breeding population provides insights into the genomic response to short-term artificial selection
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  58. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Atria: an ultra-fast and accurate trimmer for adapter and quality trimming
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    Genome assembly of the roundjaw bonefish (Albula glossodonta), a vulnerable circumtropical sportfish
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    Stepwise activities of mSWI/SNF family chromatin remodeling complexes direct T cell activation and exhaustion
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    Genome assembly of the deep-sea coral Lophelia pertusa
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  62. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    ViReMa: a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids
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  63. europepmc.org europepmc.org
    Jarid2 promotes temporal progression of retinal progenitors via repression of Foxp1
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  64. link.springer.com link.springer.com
    Expression of down-regulated ERV LTR elements associates with immune activation in human small-cell lung cancers
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    Integrated, Longitudinal Analysis of Cell-free DNA in Uveal Melanoma
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  66. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The genome of the mustard hill coral, Porites astreoides
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    A cell-type-specific alternative splicing regulator shapes synapse properties in a trans-synaptic manner
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  68. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic Resources for the North American Water Vole (Microtus richardsoni) and the Montane Vole (Microtus montanus)
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  69. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A reference genome for the critically endangered woylie, Bettongia penicillata ogilbyi
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  70. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome
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  71. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-scale draft genome sequence of horsegram (Macrotyloma uniflorum)
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  72. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The first Antechinus reference genome provides a resource for investigating the genetic basis of semelparity and age-related neuropathologies
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  73. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)
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  74. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A genome assembly of the Atlantic chub mackerel (Scomber colias): a valuable teleost fishing resource
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  75. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Long-read assemblies reveal structural diversity in genomes of organelles – an example with Acacia pycnantha
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  76. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-quality draft genome for Melaleuca alternifolia (tea tree): a new platform for evolutionary genomics of myrtaceous terpene-rich species
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  77. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Optimizing experimental design for genome sequencing and assembly with Oxford Nanopore Technologies
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  78. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The genome of a giant (trevally): Caranx ignobilis
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  79. Feb 2023
  80. link.springer.com link.springer.com
    Genes critical for development and differentiation of dopaminergic neurons are downregulated in Parkinson’s disease
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    Genome assembly of Musa beccarii shows extensive chromosomal rearrangements and genome expansion during evolution of Musaceae genomes
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    A chromosome-level genome assembly of Ostrea denselamellosa provides initial insights into its evolution
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  83. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Loss of PBRM1 alters promoter histone modifications and activates ALDH1A1 to drive renal cell carcinoma
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  84. academic.oup.com academic.oup.com
    Chromosome-level genome assembly of goose provides insight into the adaptation and growth of local goose breeds
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  85. 52.53.155.43 52.53.155.43
    Transcription factor HNF1β controls a transcriptional network regulating kidney cell structure and tight junction integrity
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  86. academic.oup.com academic.oup.com
    Expanded MutaT7 toolkit efficiently and simultaneously accesses all possible transition mutations in bacteria
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      DOI: 10.1093/nar/gkad003

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  87. Jan 2023
  88. www.nature.com www.nature.com
    A chromosome-level genome assembly of Plantago ovata
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      DOI: 10.1038/s41598-022-25078-5

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  89. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome Reporting for Healthy Populations—Pipeline for Genomic Screening from the GENCOV COVID‐19 Study
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      DOI: 10.1002/cpz1.534

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    Enrichment of oral-derived bacteria in inflamed colorectal tumors and distinct associations of Fusobacterium in the mesenchymal subtype
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    Centromeres as universal hotspots of DNA breakage, driving RAD51-mediated recombination during quiescence
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    Genomic view of the diversity and functional role of archaea and bacteria in the skeleton of the reef-building corals Porites lutea and Isopora palifera
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    A chromosome-scale assembly for tetraploid sour cherry (Prunus cerasus L.) ‘Montmorency’ identifies three distinct ancestral Prunus genomes
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    Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell–like Program Conserved in HPV-Positive Cancers
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    Inhibition of the PI3K/AKT/mTOR signaling promotes an M1 macrophage switch by repressing the ATF3-CXCL8 axis in Ewing sarcoma
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  96. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Chromosome-level genome assembly of Dastarcus helophoroides provides insights into CYP450 genes expression upon insecticide exposure
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  97. Dec 2022
  98. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Near-chromosomal de novo assembly of Bengal tiger genome reveals genetic hallmarks of apex predation
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    Efficient Correction of Oncogenic KRAS and TP53 Mutations through CRISPR Base Editing
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    Protocol to analyze population structure and migration history based on human genome variation data
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    annotate_my_genomes: an easy-to-use pipeline to improve genome annotation and uncover neglected genes by hybrid RNA sequencing
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  103. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Relative infectivity of the SARS-CoV-2 Omicron variant in human alveolar cells
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  104. Nov 2022
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    Protocol for base resolution mapping of ac4C using RedaC:T-seq
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    Essential role of MESP1-RING1A complex in cardiac differentiation
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    Molecular and anatomical characterization of parabrachial neurons and their axonal projections
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    Derivation of nociceptive sensory neurons from hiPSCs with early patterning and temporally controlled NEUROG2 overexpression
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    High-quality genome assembles from key Hawaiian coral species
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    Transcription factor antagonism regulates heterogeneity in embryonic stem cell states
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    Reconstructing mutational lineages in breast cancer by multi-patient-targeted single-cell DNA sequencing
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    FOXR2 is an epigenetically regulated pan-cancer oncogene that activates ETS transcriptional circuits
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  113. Oct 2022
  114. 52.53.155.43 52.53.155.43
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    Interleukin-33-activated neuropeptide CGRP-producing memory Th2 cells cooperate with somatosensory neurons to induce conjunctival itch
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  116. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    P2Y6 receptor-mediated signaling amplifies TLR-induced pro-inflammatory responses in microglia
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    A cis-regulatory lexicon of DNA motif combinations mediating cell-type-specific gene regulation
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  118. Sep 2022
  119. aacrjournals.org aacrjournals.org
    PU.1-dependent enhancer inhibition separates Tet2-deficient hematopoiesis from malignant transformation
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  120. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Comprehensive association analysis of speech recognition thresholds after cisplatin-based chemotherapy in survivors of adult-onset cancer
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    Identification of candidate sex‐specific genomic regions in male and female Asian arowana genomes
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    Acquired semi-squamatization during chemotherapy suggests differentiation as a therapeutic strategy for bladder cancer
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  123. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Loss of key endosymbiont genes may facilitate early host control of the chromatophore in Paulinella
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    The human mitochondrial genome contains a second light strand promoter
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  125. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Intracellular cholesterol pools regulate oncogenic signaling and epigenetic circuitries in Early T-cell Precursor Acute Lymphoblastic Leukemia
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  126. Aug 2022
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    N1-methylpseudouridine found within COVID-19 mRNA vaccines produces faithful protein products
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    Detection of m6A in single cultured cells using scDART-seq
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    The sage genome provides insight into the evolutionary dynamics of diterpene biosynthesis gene cluster in plants
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    Developmental pathways are epigenetically reprogrammed during lung cancer brain metastasis
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  131. www.sciencedirect.com www.sciencedirect.com
    TOP1 CAD-seq: A protocol to map catalytically engaged topoisomerase 1 in human cells
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    Antibiotic resistance genes are differentially mobilized according to resistance mechanism
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  133. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcription Elongation Machinery Is a Druggable Dependency and Potentiates Immunotherapy in Glioblastoma Stem Cells
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  134. Jul 2022
  135. 52.53.155.43 52.53.155.43
    A chromosome-scale genome assembly of the okapi (Okapia johnstoni)
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    Single B Cell Gene Co-Expression Networks Implicated in Prognosis, Proliferation, and Therapeutic Responses in Non-Small Cell Lung Cancer Bulk Tumors
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    A chromosome-level genome assembly and intestinal transcriptome of Trypoxylus dichotomus (Coleoptera: Scarabaeidae) to understand its lignocellulose digestion ability
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  141. Jun 2022
  142. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Clinicopathologic Characteristics of Grade 2/3 Meningiomas: A Perspective on the Role of Next-Generation Sequencing
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    The first long-read nuclear genome assembly of Oryza australiensis, a wild rice from northern Australia
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  145. aacrjournals.org aacrjournals.org
    Quantification of neoantigen-mediated immunoediting in cancer evolution
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    Genomes and demographic histories of the endangered Bretschneidera sinensis (Akaniaceae)
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  147. elifesciences.org elifesciences.org
    Dnmt3a knockout in excitatory neurons impairs postnatal synapse maturation and increases the repressive histone modification H3K27me3
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    EED is required for mouse primordial germ cell differentiation in the embryonic gonad
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    Direct epitranscriptomic regulation of mammalian translation initiation through N4-acetylcytidine
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  150. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Oct4 differentially regulates chromatin opening and enhancer transcription in pluripotent stem cells
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    Analysis of SARS-CoV-2 known and novel subgenomic mRNAs in cell culture, animal model, and clinical samples using LeTRS, a bioinformatic tool to identify unique sequence identifiers
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  152. May 2022
  153. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    DNA-PK promotes DNA end resection at DNA double strand breaks in G0 cells
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  154. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Leveraging Allele-Specific Expression for Therapeutic Response Gene Discovery in Glioblastoma
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  155. f1000research.com f1000research.com
    F1000Research Article: The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.
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  156. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mitochondrial DNA Consensus Calling and Quality Filtering for Constructing Ancient Human Mitogenomes: Comparison of Two Widely Applied Methods
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    Isolation disrupts social interactions and destabilizes brain development in bumblebees
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  158. aacrjournals.org aacrjournals.org
    Melanoma-secreted Amyloid Beta Suppresses Neuroinflammation and Promotes Brain Metastasis
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    Cytoplasmic proteotoxicity regulates HRI-dependent phosphorylation of eIF2α via the Hsp70-Bag3 module
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  160. gigabytejournal.com gigabytejournal.com
    LT1, an ONT long-read-based assembly scaffolded with Hi-C data and polished with short reads
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    A Phenogenetic Axis that Modulates Clinical Manifestation and Predicts Treatment Outcome in Primary Myeloid NeoplasmsLandscape of Myeloid Neoplasms in a Chinese Cohort
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  162. 52.53.155.43 52.53.155.43
    Lessons learned about the biology and genomics of Diaphorina citri infection with “Candidatus Liberibacter asiaticus” by integrating new and archived organ-specific transcriptome data
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  163. Apr 2022
  164. journals.physiology.org journals.physiology.org
    Whole genome sequencing identifies a deletion mutation in the unknown-functional KCNG2 from familial sick sinus syndrome
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    RPAP2 regulates a transcription initiation checkpoint by inhibiting assembly of pre-initiation complex
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    An optimized 4C-seq protocol based on cistrome and epigenome data in the mouse RAW264.7 macrophage cell line
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    HNF4A modulates glucocorticoid action in the liver
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  170. jeccr.biomedcentral.com jeccr.biomedcentral.com
    Growth factor independence underpins a paroxysmal, aggressive Wnt5aHigh/EphA2Low phenotype in glioblastoma stem cells, conducive to experimental combinatorial therapy
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  171. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Elevated MACC1 Expression in Colorectal Cancer Is Driven by Chromosomal Instability and Is Associated with Molecular Subtype and Worse Patient Survival
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  172. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-quality assembly reveals genomic characteristics, phylogenetic status, and causal genes for leucism plumage of Indian peafowl
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  173. www.sciencedirect.com www.sciencedirect.com
    A chromosome-level genome of the human blood fluke Schistosoma japonicum identifies the genomic basis of host-switching
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    Chromosome-level genome of the globe skimmer dragonfly (Pantala flavescens)
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  175. eje.bioscientifica.com eje.bioscientifica.com
    Prevalence and phenotypic features of diabetes due to recessive, non-syndromic WFS1 mutations
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  176. aacrjournals.org aacrjournals.org
    FREQUENCY AND GENOMIC ASPECTS OF INTRINSIC RESISTANCE TO VISMODEGIB IN LOCALLY ADVANCED BASAL CELL CARCINOMA
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  177. academic.oup.com academic.oup.com
    A high-quality assembled genome and its comparative analysis decode the adaptive molecular mechanism of the number one Chinese cotton variety CRI-12
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  178. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Presence of H3K4me3 on Paternally Expressed Genes of the Paternal Genome From Sperm to Implantation
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  179. Mar 2022
  180. elifesciences.org elifesciences.org
    Novel insights from a multiomics dissection of the Hayflick limit
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      DOI: 10.7554/eLife.70283

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  181. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Distribution and regulatory roles of oxidized 5-methylcytosines in DNA and RNA of the basidiomycete fungi Laccaria bicolor and Coprinopsis cinerea
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      DOI: 10.1098/rsob.210302

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  182. elifesciences.org elifesciences.org
    Confined migration promotes cancer metastasis through resistance to anoikis and increased invasiveness
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      DOI: 10.7554/eLife.73150

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    elifesciences.org/articles/73150
  183. aacrjournals.org aacrjournals.org
    EP300 Selectively Controls the Enhancer Landscape of MYCN-Amplified Neuroblastoma
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      DOI: 10.1158/2159-8290.CD-21-0385

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    aacrjournals.org/cancerdiscovery/article/12/3/730/681918/EP300-Selectively-Controls-the-Enhancer-Landscape
  184. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Nonsense-mediated RNA decay is a unique vulnerability of cancer cells harboring SF3B1 or U2AF1 mutations
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      DOI: 10.1158/0008-5472.CAN-20-4016

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  185. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    ZFTA-RELA Dictates Oncogenic Transcriptional Programs to Drive Aggressive Supratentorial Ependymoma
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      DOI: 10.1158/2159-8290.CD-20-1066

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  186. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Maelstrom functions in the production of Siwi-piRISC capable of regulating transposons in Bombyx germ cells
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  187. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Fully resolved assembly of Cryptosporidium parvum
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  188. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Allele-specific gene expression can underlie altered transcript abundance in zebrafish mutants
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  189. www.sciencedirect.com www.sciencedirect.com
    The new Haemaphysalis longicornis genome provides insights into its requisite biological traits
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  190. Feb 2022
  191. www.sciencedirect.com www.sciencedirect.com
    EBF1 nuclear repositioning instructs chromatin refolding to promote therapy resistance in T leukemic cells
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      DOI: 10.1016/j.molcel.2022.01.015

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  192. www.sciencedirect.com www.sciencedirect.com
    Simultaneous cellular and molecular phenotyping of embryonic mutants using single-cell regulatory trajectories
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  193. Jan 2022
  194. www.sciencedirect.com www.sciencedirect.com
    scDART-seq reveals distinct m6A signatures and mRNA methylation heterogeneity in single cells
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  195. www.sciencedirect.com www.sciencedirect.com
    Dynamic chromatin state profiling reveals regulatory roles of auxin and cytokinin in shoot regeneration
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  196. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Establishment of developmental gene silencing by ordered polycomb complex recruitment in early zebrafish embryos
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      DOI: 10.7554/eLife.67738

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  197. www.sciencedirect.com www.sciencedirect.com
    Multimodal regulatory elements within a hormone-specific super enhancer control a heterogeneous transcriptional response
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  198. onlinelibrary.wiley.com onlinelibrary.wiley.com
    A high-quality chromosome-level genome of the endangered roughskin sculpin provides insights into its evolution and adaptation
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      DOI: 10.1111/1755-0998.13582

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  199. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Improved chromosome-level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) integrating Pacific Biosciences long reads and a high-density linkage map
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      DOI: 10.1093/gigascience/giab097

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  200. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Enhancer RNA Expression in Response to Glucocorticoid Treatment in Murine Macrophages
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      DOI: 10.3390/cells11010028

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  201. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Heat shock factor 1 (HSF1) cooperates with estrogen receptor α (ERα) in the regulation of estrogen action in breast cancer cells
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      DOI: 10.7554/eLife.69843

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  202. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    MAP3K7 loss drives enhanced androgen signaling and independently confers risk of recurrence in prostate cancer with joint loss of CHD1
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      DOI: 10.1158/1541-7786.MCR-20-0913

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  203. Dec 2021
  204. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Transcriptome analysis reveals the contribution of oligodendrocyte and radial glia-derived cues for maintenance of microglia identity
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      DOI: 10.1002/glia.24136

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    onlinelibrary.wiley.com/doi/10.1002/glia.24136
  205. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-quality genome and comparison of short- versus long-read transcriptome of the palaearctic duck Aythya fuligula (tufted duck)
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      DOI: 10.1093/gigascience/giab081

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  206. www.sciencedirect.com www.sciencedirect.com
    Purification of astrocyte subtype based on a double reporter mice approach for downstream transcription profiling
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      DOI: 10.1016/j.xpro.2021.101009

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    sciencedirect.com/science/article/pii/S2666166721007152
  207. www.cell.com www.cell.com
    MYC assembles and stimulates topoisomerases 1 and 2 in a “topoisome”
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      DOI: 10.1016/j.molcel.2021.11.016

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    cell.com/molecular-cell/fulltext/S1097-2765(21)00996-5
  208. academic.oup.com academic.oup.com
    A high-resolution genome of an euryhaline and eurythermal rhinogoby (Rhinogobius similis Gill 1895)
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      DOI: 10.1093/g3journal/jkab395

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    academic.oup.com/g3journal/advance-article/doi/10.1093/g3journal/jkab395/6430980
  209. Nov 2021
  210. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Ploidy and recombination proficiency shape the evolutionary adaptation to constitutive DNA replication stress
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      DOI: 10.1371/journal.pgen.1009875

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  211. www.nature.com www.nature.com
    CHD5 inhibits metastasis of neuroblastoma
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      DOI: 10.1038/s41388-021-02081-0

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    nature.com/articles/s41388-021-02081-0
  212. www.sciencedirect.com www.sciencedirect.com
    Topoisomerase 1 activity during mitotic transcription favors the transition from mitosis to G1
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  213. www.sciencedirect.com www.sciencedirect.com
    Autism-related dietary preferences mediate autism-gut microbiome associations
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  214. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identification of a novel FUS/ETV4 fusion and comparative analysis with other Ewing sarcoma fusion proteins
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      DOI: 10.1158/1541-7786.MCR-21-0354

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  215. www.sciencedirect.com www.sciencedirect.com
    Ancient genome analyses shed light on kinship organization and mating practice of Late Neolithic society in China
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  216. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Pharmacogenomics characterization of the MDM2 inhibitor MI-773 reveals candidate tumours and predictive biomarkers
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      DOI: 10.1038/s41698-021-00235-7

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  217. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Disrupted PGR-B and ESR1 signaling underlies defective decidualization linked to severe preeclampsia
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      DOI: 10.7554/eLife.70753

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  218. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Sequence features of retrotransposons allow for epigenetic variability
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      DOI: 10.7554/eLife.71104

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  219. www.sciencedirect.com www.sciencedirect.com
    Acute depletion of the ARID1A subunit of SWI/SNF complexes reveals distinct pathways for activation and repression of transcription
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      DOI: 10.1016/j.celrep.2021.109943

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  220. Oct 2021
  221. www.sciencedirect.com www.sciencedirect.com
    A bipartite element with allele-specific functions safeguards DNA methylation imprints at the Dlk1-Dio3 locus
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      DOI: 10.1016/j.devcel.2021.10.004

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