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Sep 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Monocytic differentiation and AHR signaling as Primary Nodes of BET Inhibitor Response in Acute Myeloid Leukemia

1
1. scibot 28 Sep 2021
  
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  RRID:SCR_006442
  
  DOI: 10.1158/2643-3230.bcd-21-0012
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8462123/
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Cardiac pathologies in mouse loss of imprinting models are due to misexpression of H19 long noncoding RNA

1
1. scibot 14 Sep 2021
  
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  DOI: 10.7554/eLife.67250
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8425947/
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Loss of Mir146b with aging contributes to inflammation and mitochondrial dysfunction in thioglycollate-elicited peritoneal macrophages

1
1. scibot 11 Sep 2021
  
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  DOI: 10.7554/eLife.66703
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8412946/
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Regulation of protein abundance in genetically diverse mouse populations

1
1. scibot 04 Sep 2021
  
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  DOI: 10.1016/j.xgen.2021.100003
  
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sciencedirect.com/science/article/pii/S2666979X21000033
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Discovery of synthetic lethal and tumor suppressor paralog pairs in the human genome

1
1. scibot 01 Sep 2021
  
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  DOI: 10.1016/j.celrep.2021.109597
  
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sciencedirect.com/science/article/pii/S2211124721010354
Aug 2021
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Somatic Epigenetic Silencing of RIPK3 Inactivates Necroptosis and Contributes to Chemoresistance in Malignant Mesothelioma

1
1. scibot 17 Aug 2021
  
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  DOI: 10.1158/1078-0432.CCR-18-3683
  
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ncbi.nlm.nih.gov/pmc/articles/PMC7887036/
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Genome-wide and sister chromatid-resolved profiling of protein occupancy in replicated chromatin with ChOR-seq and SCAR-seq

1
1. scibot 16 Aug 2021
  
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  DOI: 10.1038/s41596-021-00585-3
  
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nature.com/articles/s41596-021-00585-3
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Transcription Factor PU.1 Promotes Conventional Dendritic Cell Identity and Function via Induction of Transcriptional Regulator DC-SCRIPT

1
1. scibot 10 Aug 2021
  
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  DOI: 10.1016/j.immuni.2018.11.010
  
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sciencedirect.com/science/article/pii/S1074761318304928
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Dichotomous Expression of TNF Superfamily Ligands on Antigen-Presenting Cells Controls Post-priming Anti-viral CD4+ T Cell Immunity

1
1. scibot 08 Aug 2021
  
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  RRID:SCR_006442
  
  DOI: 10.1016/j.immuni.2017.10.014
  
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sciencedirect.com/science/article/pii/S1074761317304697
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The COVIDome Explorer researcher portal

1
1. scibot 05 Aug 2021
  
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  DOI: 10.1016/j.celrep.2021.109527
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8316015/
Jul 2021
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Macrophage-tumor cell interaction promotes ATRT progression and chemoresistance

1
1. scibot 31 Jul 2021
  
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  Bioconductor
  
  DOI: 10.1007/s00401-019-02116-7
  
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link.springer.com/article/10.1007/s00401-019-02116-7
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Combinatorial targeting of MTHFD2 and PAICS in purine synthesis as a novel therapeutic strategy

1
1. scibot 31 Jul 2021
  
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  DOI: 10.1038/s41419-019-2033-z
  
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nature.com/articles/s41419-019-2033-z
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Human Nup98 regulates the localization and activity of DExH/D-box helicase DHX9

1
1. scibot 31 Jul 2021
  
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  RRID:SCR_006442
  
  DOI: 10.7554/eLife.18825
  
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elifesciences.org/articles/18825
onlinelibrary.wiley.com onlinelibrary.wiley.com

SNAIL1 employs β‐Catenin‐LEF1 complexes to control colorectal cancer cell invasion and proliferation

1
1. scibot 30 Jul 2021
  
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  Bioconductor
  
  DOI: 10.1002/ijc.32644
  
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onlinelibrary.wiley.com/doi/10.1002/ijc.32644
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MicroRNA Profiling During Neural Differentiation of Induced Pluripotent Stem Cells

1
1. scibot 30 Jul 2021
  
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  BioConductor
  
  DOI: 10.3390/ijms20153651
  
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ncbi.nlm.nih.gov/pmc/articles/PMC6696086/
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Maternal vitamin C regulates reprogramming of DNA methylation and germline development

1
1. scibot 30 Jul 2021
  
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  Bioconductor
  
  DOI: 10.1038/s41586-019-1536-1
  
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nature.com/articles/s41586-019-1536-1
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Untitled document

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  DOI: 10.1002/brb3.1148
  
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ncbi.nlm.nih.gov/pmc/articles/PMC6305938/
f1000research.com f1000research.com

The unfolded protein response and its potential role in Huntington ́s disease elucidated by a systems biology approach

5
1. scibot 30 Jul 2021
  
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  nif-0000-10445
  
  DOI: 10.12688/f1000research.6358.1
  
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2. scibot 30 Jul 2021
  
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  nif-0000-10445
  
  DOI: 10.12688/f1000research.6358.1
  
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3. scibot 30 Jul 2021
  
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  nif-0000-10445
  
  DOI: 10.12688/f1000research.6358.1
  
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4. scibot 30 Jul 2021
  
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  nif-0000-10445
  
  DOI: 10.12688/f1000research.6358.1
  
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5. scibot 30 Jul 2021
  
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  nif-0000-10445
  
  DOI: 10.12688/f1000research.6358.1
  
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f1000research.com/articles/4-103/v1
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Untitled document

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  DOI: 10.1002/brb3.1148
  
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onlinelibrary.wiley.com/doi/full/10.1002/brb3.1148
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Foxp1 Is Indispensable for Ductal Morphogenesis and Controls the Exit of Mammary Stem Cells from Quiescence

1
1. scibot 30 Jul 2021
  
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  RRID:SCR_006442
  
  DOI: 10.1016/j.devcel.2018.10.001
  
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sciencedirect.com/science/article/pii/S1534580718308220
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β-Glucan-Induced Trained Immunity Protects against Leishmania braziliensis Infection: a Crucial Role for IL-32

1
1. scibot 29 Jul 2021
  
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  RRID:SCR_006442
  
  DOI: 10.1016/j.celrep.2019.08.004
  
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sciencedirect.com/science/article/pii/S2211124719310277
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RIG-I-like receptors direct inflammatory macrophage polarization against West Nile virus infection

1
1. scibot 29 Jul 2021
  
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  Bioconductor
  
  DOI: 10.1038/s41467-019-11250-5
  
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nature.com/articles/s41467-019-11250-5
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Transcriptional profiling of breast cancer‐associated lymphatic vessels reveals VCAM‐1 as regulator of lymphatic invasion and permeability

1
1. scibot 29 Jul 2021
  
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  Bioconductor
  
  DOI: 10.1002/ijc.32594
  
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onlinelibrary.wiley.com/doi/full/10.1002/ijc.32594
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Forniceal deep brain stimulation induces gene expression and splicing changes that promote neurogenesis and plasticity

3
1. scibot 29 Jul 2021
  
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  DOI: 10.7554/eLife.34031
  
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2. scibot 29 Jul 2021
  
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  RRID:SCR_006442
  
  DOI: 10.7554/eLife.34031
  
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3. scibot 27 Jul 2021
  
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  RRID:SCR_006442
  
  DOI: 10.7554/eLife.34031
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5906096/
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Transcriptional analysis of Foxp3<sup>+</sup> Tregs and functions of two identified molecules during resolution of ALI

1
1. scibot 28 Jul 2021
  
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  Bioconductor
  
  DOI: 10.1172/jci.insight.124958
  
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insight.jci.org/articles/view/124958
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A chemical toolbox for the study of bromodomains and epigenetic signaling

1
1. scibot 28 Jul 2021
  
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  Bioconductor
  
  DOI: 10.1038/s41467-019-09672-2
  
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nature.com/articles/s41467-019-09672-2
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Ezh2 and Runx1 Mutations Collaborate to Initiate Lympho-Myeloid Leukemia in Early Thymic Progenitors

1
1. scibot 28 Jul 2021
  
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  RRID:SCR_006442
  
  DOI: 10.1016/j.ccell.2018.01.006
  
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sciencedirect.com/science/article/pii/S1535610818300060
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Exon Junction Complex Shapes the Transcriptome by Repressing Recursive Splicing

1
1. scibot 27 Jul 2021
  
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  Bioconductor
  
  DOI: 10.1016/j.molcel.2018.09.033
  
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sciencedirect.com/science/article/pii/S1097276518308323
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Actionable Activating Oncogenic ERBB2/HER2 Transmembrane and Juxtamembrane Domain Mutations

1
1. scibot 27 Jul 2021
  
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  Bioconductor
  
  DOI: 10.1016/j.ccell.2018.09.010
  
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sciencedirect.com/science/article/pii/S1535610818304240
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BRD4 Inhibition Is Synthetic Lethal with PARP Inhibitors through the Induction of Homologous Recombination Deficiency

1
1. scibot 27 Jul 2021
  
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  Bioconductor
  
  DOI: 10.1016/j.ccell.2018.01.019
  
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sciencedirect.com/science/article/pii/S1535610818300199
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TIAM1 Antagonizes TAZ/YAP Both in the Destruction Complex in the Cytoplasm and in the Nucleus to Inhibit Invasion of Intestinal Epithelial Cells

2
1. scibot 27 Jul 2021
  
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  Bioconductor package edgeR
  
  DOI: 10.1016/j.ccell.2017.03.007
  
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2. scibot 27 Jul 2021
  
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  Bioconductor package Rsubread
  
  DOI: 10.1016/j.ccell.2017.03.007
  
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sciencedirect.com/science/article/pii/S1535610817301034
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Two Distinct Types of E3 Ligases Work in Unison to Regulate Substrate Ubiquitylation

2
1. scibot 27 Jul 2021
  
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  Bioconductor
  
  DOI: 10.1016/j.cell.2016.07.027
  
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  Curator: @gabimpine
  
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Resistance to different anthracycline chemotherapeutics elicits distinct and actionable primary metabolic dependencies in breast cancer

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Secretory mucin 5AC promotes neoplastic progression by augmenting KLF4-mediated pancreatic cancer cell stemness

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Pharmacologic modulation of RNA splicing enhances anti-tumor immunity

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ERAD deficiency promotes mitochondrial dysfunction and transcriptional rewiring in human hepatic cells

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ZC3H4 restricts non-coding transcription in human cells

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Stem-like cells drive NF1-associated MPNST functional heterogeneity and tumor progression

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Diagnostic Biomarkers from Proteomic Characterization of Cerebrospinal Fluid in Patients with Brain Malignancies

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Tissue-specific modulation of gene expression in response to lowered insulin signalling in Drosophila

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Cell Lineage-Based Stratification for Glioblastoma

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Immunogenomic Landscape of Hematological Malignancies

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A highly multiplexed droplet digital PCR assay to measure the intact HIV-1 proviral reservoir

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Seroconversion stages COVID19 into distinct pathophysiological states

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Microglial trogocytosis and the complement system regulate axonal pruning in vivo

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BPS Publications

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Subcellular sorting of neuregulins controls the assembly of excitatory-inhibitory cortical circuits

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The corepressors GPS2 and SMRT control enhancer and silencer remodeling via eRNA transcription during inflammatory activation of macrophages

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TAMEP are brain tumor parenchymal cells controlling neoplastic angiogenesis and progression

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Pancreatic progenitor epigenome maps prioritize type 2 diabetes risk genes with roles in development

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Ribosomal profiling during prion disease uncovers progressive translational derangement in glia but not in neurons

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Binding of the Treslin-MTBP Complex to Specific Regions of the Human Genome Promotes the Initiation of DNA Replication

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Maturational Changes in Mouse Cutaneous Touch and Piezo2-Mediated Mechanotransduction

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Lamin B2 Levels Regulate Polyploidization of Cardiomyocyte Nuclei and Myocardial Regeneration

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Genomic Rewiring of SOX2 Chromatin Interaction Network during Differentiation of ESCs to Postmitotic Neurons

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Failed Apoptosis Enhances Melanoma Cancer Cell Aggressiveness

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A phenotypic screening platform utilising human spermatozoa identifies compounds with contraceptive activity

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BCG Vaccination in Humans Elicits Trained Immunity via the Hematopoietic Progenitor Compartment

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Modulation of Microglia by Voluntary Exercise or CSF1R Inhibition Prevents Age-Related Loss of Functional Motor Units

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PI3K-Yap activity drives cortical gyrification and hydrocephalus in mice

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m6A mRNA Methylation Is Essential for Oligodendrocyte Maturation and CNS Myelination

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DUX4 Suppresses MHC Class I to Promote Cancer Immune Evasion and Resistance to Checkpoint Blockade

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Atlas of Subcellular RNA Localization Revealed by APEX-Seq

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BPS Publications

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Quantification of Differential Transcription Factor Activity and Multiomics-Based Classification into Activators and Repressors: diffTF

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Discovery of Next-Generation Antimicrobials through Bacterial Self-Screening of Surface-Displayed Peptide Libraries

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mRNA and microRNA analysis reveals modulation of biochemical pathways related to addiction in the ventral tegmental area of methamphetamine self-administering rats

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The unfolded protein response and its potential role in Huntington ́s disease elucidated by a systems biology approach

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Dynamic Human Environmental Exposome Revealed by Longitudinal Personal Monitoring

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Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate

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An Atypical Parvovirus Drives Chronic Tubulointerstitial Nephropathy and Kidney Fibrosis

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Stem Cell Intrinsic Hexosamine Metabolism Regulates Intestinal Adaptation to Nutrient Content

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Neurons under T Cell Attack Coordinate Phagocyte-Mediated Synaptic Stripping

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A Map of Toll-like Receptor Expression in the Intestinal Epithelium Reveals Distinct Spatial, Cell Type-Specific, and Temporal Patterns

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Endothelial Regeneration of Large Vessels Is a Biphasic Process Driven by Local Cells with Distinct Proliferative Capacities

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Hyaluronan Receptor LYVE-1-Expressing Macrophages Maintain Arterial Tone through Hyaluronan-Mediated Regulation of Smooth Muscle Cell Collagen

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Pan-Cancer Metabolic Signature Predicts Co-Dependency on Glutaminase and De Novo Glutathione Synthesis Linked to a High-Mesenchymal Cell State

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HuD Is a Neural Translation Enhancer Acting on mTORC1-Responsive Genes and Counteracted by the Y3 Small Non-coding RNA

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EZH2-Mediated Primary Cilium Deconstruction Drives Metastatic Melanoma Formation

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Evidence for a Non-leptin System that Defends against Weight Gain in Overfeeding

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hPSC Modeling Reveals that Fate Selection of Cortical Deep Projection Neurons Occurs in the Subplate

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A LINE1-Nucleolin Partnership Regulates Early Development and ESC Identity

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Reactive Neutrophil Responses Dependent on the Receptor Tyrosine Kinase c-MET Limit Cancer Immunotherapy

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Optimizing exosomal RNA isolation for RNA-Seq analyses of archival sera specimens

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The Bicarbonate Transporter SLC4A7 Plays a Key Role in Macrophage Phagosome Acidification

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The Immune Landscape of Cancer

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Divergent N Deficiency-Dependent Senescence and Transcriptome Response in Developmentally Old and Young Brassica napus Leaves

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Context-dependent deposition and regulation of mRNAs in P-bodies.

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A genomic lifespan program that reorganises the young adult brain is targeted in schizophrenia

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Exosome RNA Unshielding Couples Stromal Activation to Pattern Recognition Receptor Signaling in Cancer

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Hypoxia-Inducible Lipid Droplet–Associated Is Not a Direct Physiological Regulator of Lipolysis in Adipose Tissue

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Mov10 suppresses retroelements and regulates neuronal development and function in the developing brain

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Type 2 Diabetes Variants Disrupt Function of SLC16A11 through Two Distinct Mechanisms

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Distinct Roles of RNA Helicases MVH and TDRD9 in PIWI Slicing-Triggered Mammalian piRNA Biogenesis and Function

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Pseudotemporal Ordering of Single Cells Reveals Metabolic Control of Postnatal β Cell Proliferation

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Sox11 Expression Promotes Regeneration of Some Retinal Ganglion Cell Types but Kills Others

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Truncated TrkB.T1-Mediated Astrocyte Dysfunction Contributes to Impaired Motor Function and Neuropathic Pain after Spinal Cord Injury

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Aubergine Controls Germline Stem Cell Self-Renewal and Progeny Differentiation via Distinct Mechanisms

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Transcriptomic buffering of cryptic genetic variation contributes to meningococcal virulence

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Transient RNA-DNA Hybrids Are Required for Efficient Double-Strand Break Repair

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Hoxa9 and Meis1 Cooperatively Induce Addiction to Syk Signaling by Suppressing miR-146a in Acute Myeloid Leukemia

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5′ End Nicotinamide Adenine Dinucleotide Cap in Human Cells Promotes RNA Decay through DXO-Mediated deNADding

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Translation in astrocyte distal processes sets molecular heterogeneity at the gliovascular interface

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Metazoan Nuclear Pores Provide a Scaffold for Poised Genes and Mediate Induced Enhancer-Promoter Contacts

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Development of Peptidomimetic Inhibitors of the ERG Gene Fusion Product in Prostate Cancer

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BTBD18 Regulates a Subset of piRNA-Generating Loci through Transcription Elongation in Mice

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Identification of Nascent Memory CD8 T Cells and Modeling of Their Ontogeny

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CpG Island Hypermethylation Mediated by DNMT3A Is a Consequence of AML Progression

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Paf1 Has Distinct Roles in Transcription Elongation and Differential Transcript Fate

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Antagonistic Self-Organizing Patterning Systems Control Maintenance and Regeneration of the Anteroposterior Axis in Planarians

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Human AML-iPSCs Reacquire Leukemic Properties after Differentiation and Model Clonal Variation of Disease

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Cell culture-based profiling across mammals reveals DNA repair and metabolism as determinants of species longevity

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Isoforms of RNA-Editing Enzyme ADAR1 Independently Control Nucleic Acid Sensor MDA5-Driven Autoimmunity and Multi-organ Development

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Regulation of Neuronal Gene Expression and Survival by Basal NMDA Receptor Activity: A Role for Histone Deacetylase 4

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