849 Matching Annotations
  1. Nov 2017
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
    1
    1. scibot 08 Nov 2017
      RRID:SCR_002105

      Curator: @patriciaelyse_

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    ncbi.nlm.nih.gov/pmc/articles/PMC5570000/
  3. europepmc.org europepmc.org
    Dosage compensation and sex-specific epigenetic landscape of the X chromosome in the pea aphid.
    1
    1. scibot 08 Nov 2017
      RRID:SCR_002105

      Curator: @Jmenke

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    europepmc.org/articles/PMC5471693/
  4. www.sciencedirect.com www.sciencedirect.com
    Enhancer Reprogramming Promotes Pancreatic Cancer Metastasis
    1
    1. scibot 08 Nov 2017
      Samtools

      Curator: @Jmenke

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S0092867417308140
  5. www.sciencedirect.com www.sciencedirect.com
    Extensive Farming in Estonia Started through a Sex-Biased Migration from the Steppe
    1
    1. scibot 08 Nov 2017
      SCR_002105

      Curator: @chewbeccax

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S0960982217307248
  6. www.sciencedirect.com www.sciencedirect.com
    The Discovery of Wild Date Palms in Oman Reveals a Complex Domestication History Involving Centers in the Middle East and Africa
    1
    1. scibot 08 Nov 2017
      SCR_002105

      Curator: @chewbeccax

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S0960982217307820
  7. elifesciences.org elifesciences.org
    Pilot study of large-scale production of mutant pigs by ENU mutagenesis
    1
    1. scibot 08 Nov 2017
      SCR_002105

      Curator: @chewbeccax

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      (SAMTOOLS, RRID:SCR_002105)

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    elifesciences.org/articles/26248
  8. elifesciences.org elifesciences.org
    Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells
    1
    1. scibot 08 Nov 2017
      samtools

      Curator: @chewbeccax

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      (SAMTOOLS, RRID:SCR_002105)

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    elifesciences.org/articles/23203
  9. bmcbiol.biomedcentral.com bmcbiol.biomedcentral.com
    Mov10 suppresses retroelements and regulates neuronal development and function in the developing brain
    1
    1. scibot 08 Nov 2017
      SCR_002105

      Curator: @chewbeccax

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    bmcbiol.biomedcentral.com/articles/10.1186/s12915-017-0387-1
  10. www.sciencedirect.com www.sciencedirect.com
    LTR-Retrotransposon Control by tRNA-Derived Small RNAs
    1
    1. scibot 08 Nov 2017
      Samtools

      Curator: @chewbeccax

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    sciencedirect.com/science/article/pii/S0092867417306967
  11. www.sciencedirect.com www.sciencedirect.com
    Red Blood Cell Invasion by the Malaria Parasite Is Coordinated by the PfAP2-I Transcription Factor
    1
    1. scibot 08 Nov 2017
      SAMtools

      Curator: @chewbeccax

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S1931312817301993
  12. www.sciencedirect.com www.sciencedirect.com
    Coordinated circRNA Biogenesis and Function with NF90/NF110 in Viral Infection
    1
    1. scibot 08 Nov 2017
      Samtools

      Curator: @chewbeccax

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S1097276517303635
  13. elifesciences.org elifesciences.org
    A large gene family in fission yeast encodes spore killers that subvert Mendel’s law
    1
    1. scibot 08 Nov 2017
      SCR_002105

      Curator: @chewbeccax

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      (SAMTOOLS, RRID:SCR_002105)

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    elifesciences.org/articles/26057
  14. elifesciences.org elifesciences.org
    Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexity
    1
    1. scibot 08 Nov 2017
      SCR_002105

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    elifesciences.org/articles/22194v2
  15. elifesciences.org elifesciences.org
    Evolution of reduced co-activator dependence led to target expansion of a starvation response pathway
    1
    1. scibot 08 Nov 2017
      SCR_002105

      Curator: @Zeljana_Babic

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      (SAMTOOLS, RRID:SCR_002105)

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    elifesciences.org/articles/25157
  16. www.sciencedirect.com www.sciencedirect.com
    Interferon-λ Mediates Non-redundant Front-Line Antiviral Protection against Influenza Virus Infection without Compromising Host Fitness
    1
    1. scibot 08 Nov 2017
      SCR_002105

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    sciencedirect.com/science/article/pii/S1074761317301905
  17. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Reading LINEs within the cocaine addicted brain
    1
    1. scibot 08 Nov 2017
      SCR_002105

      Curator: @chewbeccax

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      (SAMTOOLS, RRID:SCR_002105)

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    ncbi.nlm.nih.gov/pmc/articles/PMC5434184/
  18. www.sciencedirect.com www.sciencedirect.com
    A Global View of RNA-Protein Interactions Identifies Post-transcriptional Regulators of Root Hair Cell Fate
    1
    1. scibot 08 Nov 2017
      Samtools v0.1.19

      Curator: @Zeljana_Babic

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S1534580717302022
  19. elifesciences.org elifesciences.org
    Variation in olfactory neuron repertoires is genetically controlled and environmentally modulated
    1
    1. scibot 08 Nov 2017
      SCR_002105

      Curator: @kaitlinsung

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      (SAMTOOLS, RRID:SCR_002105)

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    elifesciences.org/content/6/e21476
  20. www.sciencedirect.com www.sciencedirect.com
    Transient RNA-DNA Hybrids Are Required for Efficient Double-Strand Break Repair
    1
    1. scibot 08 Nov 2017
      Samtools

      Curator: @chewbeccax

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S0092867416313824
  21. www.sciencedirect.com www.sciencedirect.com
    Foxh1 Occupies cis-Regulatory Modules Prior to Dynamic Transcription Factor Interactions Controlling the Mesendoderm Gene Program
    1
    1. scibot 08 Nov 2017
      SCR_002105

      Curator: @kaitlinsung

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S1534580717300862
  22. www.sciencedirect.com www.sciencedirect.com
    Large, Diverse Population Cohorts of hiPSCs and Derived Hepatocyte-like Cells Reveal Functional Genetic Variation at Blood Lipid-Associated Loci
    1
    1. scibot 08 Nov 2017
      SAMtools mpileup

      Curator: @Zeljana_Babic

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S1934590917300887
  23. www.sciencedirect.com www.sciencedirect.com
    Super-Enhancer-Mediated RNA Processing Revealed by Integrative MicroRNA Network Analysis
    1
    1. scibot 08 Nov 2017
      Samtools

      Curator: @Zeljana_Babic

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S0092867417301939
  24. www.sciencedirect.com www.sciencedirect.com
    Comprehensive Cell Surface Protein Profiling Identifies Specific Markers of Human Naive and Primed Pluripotent States
    1
    1. scibot 08 Nov 2017
      Samtools

      Curator: @Zeljana_Babic

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S1934590917300711
  25. www.sciencedirect.com www.sciencedirect.com
    Single-Cell 5-Formylcytosine Landscapes of Mammalian Early Embryos and ESCs at Single-Base Resolution
    1
    1. scibot 08 Nov 2017
      samtools (version: 0.1.18)

      Curator: @Zeljana_Babic

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S193459091730070X
  26. www.sciencedirect.com www.sciencedirect.com
    Commensal Microbes and Hair Follicle Morphogenesis Coordinately Drive Treg Migration into Neonatal Skin
    1
    1. scibot 08 Nov 2017
      SAMtools

      Curator: @Zeljana_Babic

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S1931312817301117
  27. www.sciencedirect.com www.sciencedirect.com
    Histone Variant H2A.L.2 Guides Transition Protein-Dependent Protamine Assembly in Male Germ Cells
    1
    1. scibot 08 Nov 2017
      Samtools v.1.3.1

      Curator: @Zeljana_Babic

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S1097276517301624
  28. www.sciencedirect.com www.sciencedirect.com
    H3K4 Methylation-Dependent Memory of Somatic Cell Identity Inhibits Reprogramming and Development of Nuclear Transfer Embryos
    1
    1. scibot 08 Nov 2017
      samtools 0.1.8

      Curator: @Zeljana_Babic

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S1934590917300747
  29. www.sciencedirect.com www.sciencedirect.com
    Gene Resistance to Transcriptional Reprogramming following Nuclear Transfer Is Directly Mediated by Multiple Chromatin-Repressive Pathways
    1
    1. scibot 08 Nov 2017
      samtools 0.1.8

      Curator: @Zeljana_Babic

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S1097276517300564
  30. www.sciencedirect.com www.sciencedirect.com
    Histone Acetylome-wide Association Study of Autism Spectrum Disorder
    1
    1. scibot 08 Nov 2017
      SAMtools

      Curator: @chewbeccax

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S0092867416314519
  31. www.sciencedirect.com www.sciencedirect.com
    Impaired Amino Acid Transport at the Blood Brain Barrier Is a Cause of Autism Spectrum Disorder
    1
    1. scibot 08 Nov 2017
      SAMtools

      Curator: @chewbeccax

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S0092867416315343
  32. www.sciencedirect.com www.sciencedirect.com
    Destabilization of B2 RNA by EZH2 Activates the Stress Response
    1
    1. scibot 08 Nov 2017
      Samtools

      Curator: @chewbeccax

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S0092867416316518
  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Novel adverse outcome pathways revealed by chemical genetics in a developing marine fish
    1
    1. scibot 08 Nov 2017
      SCR_002105

      Curator: @Zeljana_Babic

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      (SAMTOOLS, RRID:SCR_002105)

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    ncbi.nlm.nih.gov/pmc/articles/PMC5302885/
  34. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Layer-specific chromatin accessibility landscapes reveal regulatory networks in adult mouse visual cortex
    1
    1. scibot 08 Nov 2017
      SCR_002105

      Curator: @kaitlinsung

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      (SAMTOOLS, RRID:SCR_002105)

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    ncbi.nlm.nih.gov/pmc/articles/PMC5325622/
  35. www.sciencedirect.com www.sciencedirect.com
    Nuclear RNA Decay Pathways Aid Rapid Remodeling of Gene Expression in Yeast
    1
    1. scibot 08 Nov 2017
      SAMtools

      Curator: @kaitlinsung

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S1097276517300059
  36. www.sciencedirect.com www.sciencedirect.com
    Mutations in Human Accelerated Regions Disrupt Cognition and Social Behavior
    1
    1. scibot 08 Nov 2017
      Samtools

      Curator: @chewbeccax

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    sciencedirect.com/science/article/pii/S0092867416311692
  37. www.sciencedirect.com www.sciencedirect.com
    Paf1 Has Distinct Roles in Transcription Elongation and Differential Transcript Fate
    1
    1. scibot 08 Nov 2017
      Samtools

      Curator: @kaitlinsung

      Curator note: Same URL as Galaxy

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    sciencedirect.com/science/article/pii/S1097276517300060
  38. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Identification of a conserved gene signature associated with an exacerbated inflammatory environment in the hippocampus of aging rats
    1
    1. scibot 08 Nov 2017
      SAMtools

      Curator: @gabimpine

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    onlinelibrary.wiley.com/doi/10.1002/hipo.22703/full
  39. www.sciencedirect.com www.sciencedirect.com
    Nicotinamide Ameliorates Disease Phenotypes in a Human iPSC Model of Age-Related Macular Degeneration
    1
    1. scibot 08 Nov 2017
      Samtools

      Curator: @Zeljana_Babic

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S1934590916305021
  40. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Dormancy-specific imprinting underlies maternal inheritance of seed dormancy in Arabidopsis thaliana
    1
    1. scibot 08 Nov 2017
      SCR_002105

      Curator: @gabimpine

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      (SAMTOOLS, RRID:SCR_002105)

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    ncbi.nlm.nih.gov/pmc/articles/PMC5243116/
  41. www.sciencedirect.com www.sciencedirect.com
    A Biobank of Breast Cancer Explants with Preserved Intra-tumor Heterogeneity to Screen Anticancer Compounds
    1
    1. scibot 08 Nov 2017
      samtools

      Curator: @gabimpine

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      (SAMTOOLS, RRID:SCR_002105)

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    sciencedirect.com/science/article/pii/S0092867416311382
  42. www.sciencedirect.com www.sciencedirect.com
    The Deubiquitinase OTULIN Is an Essential Negative Regulator of Inflammation and Autoimmunity
    1
    1. scibot 08 Nov 2017
      SAMtools

      Curator: @chewbeccax

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      (SAMTOOLS, RRID:SCR_002105)

      SciCrunch record: RRID:SCR_002105

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      RRID:SCR_002105 RRIDCUR:Missing
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    sciencedirect.com/science/article/pii/S0092867416309266
  43. www.sciencedirect.com www.sciencedirect.com
    Direct GR Binding Sites Potentiate Clusters of TF Binding across the Human Genome
    1
    1. scibot 08 Nov 2017
      SAMtools

      Curator: @chewbeccax

      Resource used:

      (SAMTOOLS, RRID:SCR_002105)

      SciCrunch record: RRID:SCR_002105

      Alternate resolvers: SciCrunch xml N2T identifiers.org

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      RRID:SCR_002105 RRIDCUR:Missing
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    sciencedirect.com/science/article/pii/S0092867416309990
  44. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Spatiotemporal coupling and decoupling of gene transcription with DNA replication origins during embryogenesis in C. elegans
    1
    1. scibot 08 Nov 2017
      SCR_002105

      Curator: @gabimpine

      Resource used:

      (SAMTOOLS, RRID:SCR_002105)

      SciCrunch record: RRID:SCR_002105

      Alternate resolvers: SciCrunch xml N2T identifiers.org

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      RRID:SCR_002105 RRIDCUR:Validated
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    ncbi.nlm.nih.gov/pmc/articles/PMC5222557/
  45. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An alternative splicing program promotes adipose tissue thermogenesis
    1
    1. scibot 08 Nov 2017
      Samtools

      Curator: @gabimpine

      Resource used:

      (SAMTOOLS, RRID:SCR_002105)

      SciCrunch record: RRID:SCR_002105

      Alternate resolvers: SciCrunch xml N2T identifiers.org

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      RRID:SCR_002105 RRIDCUR:Missing
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    ncbi.nlm.nih.gov/pmc/articles/PMC5026472/
  46. www.sciencedirect.com www.sciencedirect.com
    Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics
    1
    1. scibot 08 Nov 2017
      Samtools

      Curator: @gabimpine

      Resource used:

      (SAMTOOLS, RRID:SCR_002105)

      SciCrunch record: RRID:SCR_002105

      Alternate resolvers: SciCrunch xml N2T identifiers.org

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      RRID:SCR_002105 RRIDCUR:Missing
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    sciencedirect.com/science/article/pii/S0092867416310078
  47. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome
    1
    1. scibot 08 Nov 2017
      SCR_002105

      Curator: @gabimpine

      Resource used:

      (SAMTOOLS, RRID:SCR_002105)

      SciCrunch record: RRID:SCR_002105

      Alternate resolvers: SciCrunch xml N2T identifiers.org

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      RRID:SCR_002105 RRIDCUR:Validated
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    ncbi.nlm.nih.gov/pmc/articles/PMC5182062/
  48. www.sciencedirect.com www.sciencedirect.com
    A Multi-step Transcriptional and Chromatin State Cascade Underlies Motor Neuron Programming from Embryonic Stem Cells
    1
    1. scibot 08 Nov 2017
      SCR_002105

      Curator: @gabimpine

      Resource used:

      (SAMTOOLS, RRID:SCR_002105)

      SciCrunch record: RRID:SCR_002105

      Alternate resolvers: SciCrunch xml N2T identifiers.org

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      RRID:SCR_002105 RRIDCUR:Validated
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    sciencedirect.com/science/article/pii/S1934590916304027
  49. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Hedgehog signaling regulates gene expression in planarian glia
    1
    1. scibot 08 Nov 2017
      SCR_002105

      Curator: @gabimpine

      Resource used:

      (SAMTOOLS, RRID:SCR_002105)

      SciCrunch record: RRID:SCR_002105

      Alternate resolvers: SciCrunch xml N2T identifiers.org

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      RRID:SCR_002105 RRIDCUR:Validated
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    ncbi.nlm.nih.gov/pmc/articles/PMC5055395/
  50. www.sciencedirect.com www.sciencedirect.com
    Biallelic Variants in UBA5 Reveal that Disruption of the UFM1 Cascade Can Result in Early-Onset Encephalopathy
    1
    1. scibot 08 Nov 2017
      SAMtools

      Curator: @gabimpine

      Resource used:

      (SAMTOOLS, RRID:SCR_002105)

      SciCrunch record: RRID:SCR_002105

      Alternate resolvers: SciCrunch xml N2T identifiers.org

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      RRID:SCR_002105 RRIDCUR:Missing
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    sciencedirect.com/science/article/pii/S0002929716302683