- Feb 2022
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ccb-microbe.cs.uni-saarland.de ccb-microbe.cs.uni-saarland.dePLSDB1
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kinametrix.com kinametrix.com
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www.cancerimmunityqtl-hust.com www.cancerimmunityqtl-hust.com
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microbedb.jp microbedb.jp
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nabe.denglab.org nabe.denglab.org
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www.sealifebase.ca www.sealifebase.ca
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www.maayanlab.net www.maayanlab.netESCAPE1
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www.iucnredlist.org www.iucnredlist.org
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tisch.comp-genomics.org tisch.comp-genomics.orgTISCH1
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119.3.41.228 119.3.41.228DNMIVD1
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www.proteomicsdb.org www.proteomicsdb.org
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legacy.echinobase.org legacy.echinobase.org
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www.polyasite.unibas.ch www.polyasite.unibas.ch
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www.bio-bigdata.net www.bio-bigdata.net
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bioinfo.njau.edu.cn bioinfo.njau.edu.cn
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covid19researchdatabase.org covid19researchdatabase.org
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rat.biomedtzc.cn rat.biomedtzc.cn
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tools.bgci.org tools.bgci.org
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Annotators
URL
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www.ipni.org www.ipni.org
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cnvintegrate.cgm.ntu.edu.tw cnvintegrate.cgm.ntu.edu.twCNV-home1
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data.microbiomedata.org data.microbiomedata.org
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www.interactome-atlas.org www.interactome-atlas.org
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brp.kfshrc.edu.sa brp.kfshrc.edu.saBúsqueda1
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URL
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revenant.bioinformatica.org revenant.bioinformatica.org
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phylomedb.org phylomedb.org
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https://github.com/lmichan/BioDBS
PhylomeDB is a public database for complete catalogs of gene phylogenies (phylomes)
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flow.hemiptera-databases.org flow.hemiptera-databases.org
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cis.hku.hk cis.hku.hk
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iomics.ugent.be iomics.ugent.be
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gmrepo.humangut.info gmrepo.humangut.info
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www.mulinlab.org www.mulinlab.org
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antismash-db.secondarymetabolites.org antismash-db.secondarymetabolites.org
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www.jcvi.org www.jcvi.orgTIGRFAMS1
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big.cdu.edu.cn big.cdu.edu.cn
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signor.uniroma2.it signor.uniroma2.it
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www.itis.gov www.itis.gov
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proteininformationresource.org proteininformationresource.org
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cov3d.ibbr.umd.edu cov3d.ibbr.umd.eduCoV3D1
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https://github.com/lmichan/BioDBS
nar:https://academic.oup.com/nar/article/49/D1/D1/6059975
wikidata:https://www.wikidata.org/wiki/Q110577226
narid: https://www.oxfordjournals.org/nar/database/summary/2224
dc_subject: "COVID-19"
dc_date: 2021
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ctrdb.ncpsb.org.cn ctrdb.ncpsb.org.cnctr-db1
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ngdc.cncb.ac.cn ngdc.cncb.ac.cn
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sourceforge.net sourceforge.netGemina1
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db.humanconnectome.org db.humanconnectome.org
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https://github.com/lmichan/BioDBS
neurociencias
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allomaps.bii.a-star.edu.sg allomaps.bii.a-star.edu.sg
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target.sbg.qb.fcen.uba.ar target.sbg.qb.fcen.uba.ar
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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www.biosino.org www.biosino.orgGT1
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https://github.com/lmichan/BioDBS
GTDB is an integrated repository of glycosyltransferases, which collects comprehensive information, including amino acid sequences, coding region sequences, available tertiary structures, protein classification families, catalytic reactions and metabolic pathways involved, from distinct well-known databases or predictions.
Search—advanced search provides various queries to specify users’ concerns accurately.
Browse—browse data by diverse classifications and download those data in batches.
BLAST— sequence search of GTDB to annotate query glycosyltransferases’ functions.
GTdock—performs several glycosyltransferases docking with the same one acceptor easily by AutoDock Vina.
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www.antbase.org www.antbase.org
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www.linkedomics.org www.linkedomics.org
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explorer.natureserve.org explorer.natureserve.org
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dcmp.vit.ac.in dcmp.vit.ac.in
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www.invasive.org www.invasive.org
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amoebadb.org amoebadb.orgAmoebaDB1
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https://github.com/lmichan/BioDBS
br:https://biopragmatics.github.io/bioregistry/curation/
narid:https://www.oxfordjournals.org/nar/database/summary/1393
wd:https://www.wikidata.org/wiki/Q4747456
br:https://bioregistry.io/registry/amoebadb
br:https://bioregistry.io/registry/amoebadb
narid:1393
dc_subject:
dc_date: 2011
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Annotators
URL
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www.covid19dataportal.org www.covid19dataportal.org
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microbiomestressproject.weebly.com microbiomestressproject.weebly.com
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www.storefish.org www.storefish.org
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https://github.com/lmichan/BioDBS
Ecología, peces, teleosteos
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www.gbif.org www.gbif.orgGBIF1
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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www.vmh.life www.vmh.life
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www.web-of-life.es www.web-of-life.es
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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146.118.64.11 146.118.64.11
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agricola.nal.usda.gov agricola.nal.usda.gov
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antibodyregistry.org antibodyregistry.org
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www.gramene.org www.gramene.org
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www.earthbiogenome.org www.earthbiogenome.org
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mcube.nju.edu.cn mcube.nju.edu.cn
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services.bromberglab.org services.bromberglab.orgfusiondb1
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www.mulinlab.org www.mulinlab.org
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globalants.org globalants.org
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sesmad.dartmouth.edu sesmad.dartmouth.eduSESMAD1
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https://github.com/lmichan/BioDBS
ecologia
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biodev.cea.fr biodev.cea.fr
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github.com github.com
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edwip.ecology.uga.edu edwip.ecology.uga.edu
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www.stanleygenomics.org www.stanleygenomics.org
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redfly.ccr.buffalo.edu redfly.ccr.buffalo.edu
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www.cancergenomeinterpreter.org www.cancergenomeinterpreter.org
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diseases.jensenlab.org diseases.jensenlab.org
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tissues.jensenlab.org tissues.jensenlab.org
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antibodyregistry.org antibodyregistry.org
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www.ancestralgenomes.org www.ancestralgenomes.org
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ttsmi.bii.a-star.edu.sg ttsmi.bii.a-star.edu.sg
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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signor.uniroma2.it signor.uniroma2.it
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trade.cites.org trade.cites.org
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sbcddb.moffitt.org sbcddb.moffitt.org
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portal.hubmapconsortium.org portal.hubmapconsortium.org
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prosite.expasy.org prosite.expasy.org
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microbiomedb.org microbiomedb.org
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labs.mcdb.lsa.umich.edu labs.mcdb.lsa.umich.edu
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prochipdb.org prochipdb.org
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celltypes.brain-map.org celltypes.brain-map.org
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rna.sysu.edu.cn rna.sysu.edu.cn
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www.addgene.org www.addgene.org
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exbio.wzw.tum.de exbio.wzw.tum.de
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dip.doe-mbi.ucla.edu dip.doe-mbi.ucla.eduDIP:Home1
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treebase.org treebase.org
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Annotators
URL
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img.jgi.doe.gov img.jgi.doe.gov
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cncdatabase.med.cornell.edu cncdatabase.med.cornell.edu
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icestes.github.io icestes.github.ioCESTES1
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www.biosino.org www.biosino.org
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hcmdb.i-sanger.com hcmdb.i-sanger.com
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scop.mrc-lmb.cam.ac.uk scop.mrc-lmb.cam.ac.uk
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grand.networkmedicine.org grand.networkmedicine.org
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thebiogrid.org thebiogrid.org
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pathbank.org pathbank.orgPathBank1
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www.nie-ecobank.kr www.nie-ecobank.kr
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cucurbitgenomics.org cucurbitgenomics.org
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github.com github.com
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www.algaebase.org www.algaebase.org
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github.com github.com
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github.com github.com
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http://korkinlab.org/dommino
https://github.com/lmichan/BioDBS
ti:DOMMINO database on macromolecular interactions
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URL
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csvs.babelomics.org csvs.babelomics.org
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bionames.org bionames.orgBioNames1
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www.larvalbase.org www.larvalbase.org
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spica.unil.ch spica.unil.chESPICA1
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www.marinespecies.org www.marinespecies.org
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bioinfo.life.hust.edu.cn bioinfo.life.hust.edu.cn
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gtdb.ecogenomic.org gtdb.ecogenomic.org
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www.mirbase.org www.mirbase.orgmiRBase1
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bactome.helmholtz-hzi.de bactome.helmholtz-hzi.de
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veupathdb.org veupathdb.org
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silver.sejong.ac.kr silver.sejong.ac.kr
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arapheno.1001genomes.org arapheno.1001genomes.org
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insidewood.lib.ncsu.edu insidewood.lib.ncsu.edu
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www.bindingdb.org www.bindingdb.org
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insectbraindb.org insectbraindb.org
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https://github.com/lmichan/BioDBS
neurociencias
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URL
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rfam.xfam.org rfam.xfam.org
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www.departments.bucknell.edu www.departments.bucknell.edu
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enhanceratlas.net enhanceratlas.net
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www.movebank.org www.movebank.orgMovebank1
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URL
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www.patlas.site www.patlas.site
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www.ecodrug.org www.ecodrug.orgECOdrug1
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www.sealifebase.se www.sealifebase.se
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www.plprot.ethz.ch www.plprot.ethz.ch
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zinc.docking.org zinc.docking.org
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collectf.org collectf.org
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brassicadb.cn brassicadb.cnBRAD1
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www.microvesicles.org www.microvesicles.org
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diprodb.fli-leibniz.de diprodb.fli-leibniz.de
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www.innatedb.com www.innatedb.com
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cplm.biocuckoo.cn cplm.biocuckoo.cn
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jpostdb.org jpostdb.org
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dianalab.e-ce.uth.gr dianalab.e-ce.uth.gr
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vega.archive.ensembl.org vega.archive.ensembl.org
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animal.nwsuaf.edu.cn animal.nwsuaf.edu.cnWGVD1
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https://github.com/lmichan/BioDBS
Bread wheat (Triticum aetivum)
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URL
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biosig.unimelb.edu.au biosig.unimelb.edu.au
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encompass.ninds.nih.gov encompass.ninds.nih.govAbarcar1
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talk.ictvonline.org talk.ictvonline.org
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www.tobaccodb.org www.tobaccodb.orgPLncDB1
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pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
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opig.stats.ox.ac.uk opig.stats.ox.ac.ukSTCRDab1
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cadd.gs.washington.edu cadd.gs.washington.edu
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glycopost.glycosmos.org glycopost.glycosmos.org
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www.ymdb.ca www.ymdb.ca
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www.rna-society.org www.rna-society.orgCasa1
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webchemdev.ncbr.muni.cz webchemdev.ncbr.muni.cz
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gcv-arabidopsis.ncgr.org gcv-arabidopsis.ncgr.org
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www.tartaglialab.com www.tartaglialab.com
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sgrnascorer.cancer.gov sgrnascorer.cancer.gov
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www.cabi.org www.cabi.org
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www.bioinsilico.org www.bioinsilico.orgT-ARDIS1
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plants.ensembl.org plants.ensembl.org
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https://github.com/lmichan/BioDBS
ti:EnsemblPlants
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URL
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nanobase.org nanobase.orgNanobase1
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discovery.informatics.uab.edu discovery.informatics.uab.edu
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bioinformatics.biol.uoa.gr bioinformatics.biol.uoa.gr
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chewbbaca.online chewbbaca.online
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www.tropicos.org www.tropicos.org
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www.speciesfungorum.org www.speciesfungorum.org
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