756 Matching Annotations
  1. Jul 2021
  2. www.sciencedirect.com www.sciencedirect.com
    RNA Binding to CBP Stimulates Histone Acetylation and Transcription
    2
    1. scibot 27 Jul 2021
      Samtools

      DOI: 10.1016/j.cell.2016.12.020

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    2. scibot 27 Jul 2021
      Samtools

      DOI: 10.1016/j.cell.2016.12.020

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    sciencedirect.com/science/article/pii/S0092867416317366
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    Ezh2 and Runx1 Mutations Collaborate to Initiate Lympho-Myeloid Leukemia in Early Thymic Progenitors
    1
    1. scibot 27 Jul 2021
      RRID:SCR_002105

      DOI: 10.1016/j.ccell.2018.01.006

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    sciencedirect.com/science/article/pii/S1535610818300060
  4. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    1. scibot 27 Jul 2021
      RRID:SCR_002105

      DOI: 10.1093/gigascience/gix112

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    ncbi.nlm.nih.gov/pmc/articles/PMC5751067/
  5. elifesciences.org elifesciences.org
    Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation
    1
    1. scibot 27 Jul 2021
      RRID:SCR_00210

      DOI: 10.7554/eLife.47891

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    elifesciences.org/articles/47891
  6. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A molecular portrait of maternal sepsis from Byzantine Troy
    2
    1. scibot 27 Jul 2021
      SCR_002105

      DOI: 10.7554/eLife.20983

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    2. scibot 27 Jul 2021
      SCR_002105

      DOI: 10.7554/eLife.20983

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    ncbi.nlm.nih.gov/pmc/articles/PMC5224923/
  7. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Transcriptome profiling of developing photoreceptor subtypes reveals candidate genes involved in avian photoreceptor diversification
    1
    1. scibot 27 Jul 2021
      nlx_154607

      DOI: 10.1002/cne.23702

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    onlinelibrary.wiley.com/doi/10.1002/cne.23702/full
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    Targeted protein degradation reveals a direct role of SPT6 in RNAPII elongation and termination
    1
    1. scibot 09 Jul 2021
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      DOI: 10.1016/j.molcel.2021.06.016

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    sciencedirect.com/science/article/pii/S1097276521004962
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    Patient-derived iPSC-cerebral organoid modeling of the 17q11.2 microdeletion syndrome establishes CRLF3 as a critical regulator of neurogenesis
    1
    1. scibot 07 Jul 2021
      RRID:SCR_002105

      DOI: 10.1016/j.celrep.2021.109315

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    sciencedirect.com/science/article/pii/S2211124721006914
  10. Jun 2021
  11. www.sciencedirect.com www.sciencedirect.com
    Pharmacologic modulation of RNA splicing enhances anti-tumor immunity
    1
    1. scibot 25 Jun 2021
      RRID:SCR_002105

      DOI: 10.1016/j.cell.2021.05.038

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    sciencedirect.com/science/article/pii/S0092867421006905
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    A drastic shift in the energetic landscape of toothed whale sperm cells
    1
    1. scibot 25 Jun 2021
      RRID:SCR_002105

      DOI: 10.1016/j.cub.2021.05.062

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    sciencedirect.com/science/article/pii/S0960982221007600
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    Protocol for using heterologous spike-ins to normalize for technical variation in chromatin immunoprecipitation
    1
    1. scibot 17 Jun 2021
      SCR_002105

      DOI: 10.1016/j.xpro.2021.100609

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    sciencedirect.com/science/article/pii/S2666166721003166
  14. elifesciences.org elifesciences.org
    SORBS2 is a genetic factor contributing to cardiac malformation of 4q deletion syndrome patients
    1
    1. scibot 11 Jun 2021
      RRID:SCR_002105

      DOI: 10.7554/eLife.67481

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    elifesciences.org/articles/67481
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    Sublayer- and cell-type-specific neurodegenerative transcriptional trajectories in hippocampal sclerosis
    1
    1. scibot 09 Jun 2021
      RRID:SCR_002105

      DOI: 10.1016/j.celrep.2021.109229

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    sciencedirect.com/science/article/pii/S2211124721005805
  16. May 2021
  17. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Two high-quality de novo genomes from single ethanol-preserved specimens of tiny metazoans (Collembola)
    1
    1. scibot 27 May 2021
      RRID:SCR_002105

      DOI: 10.1093/gigascience/giab035

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    ncbi.nlm.nih.gov/pmc/articles/PMC8138834/
  18. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    ZC3H4 restricts non-coding transcription in human cells
    1
    1. scibot 26 May 2021
      SCR_002105

      DOI: 10.7554/eLife.67305

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    ncbi.nlm.nih.gov/pmc/articles/PMC8137146/
  19. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Integrated sensing of host stresses by inhibition of a cytoplasmic two-component system controls M. tuberculosis acute lung infection
    1
    1. scibot 21 May 2021
      RRID:SCR_002105

      DOI: 10.7554/eLife.65351

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    ncbi.nlm.nih.gov/pmc/articles/PMC8131098/
  20. academic.oup.com academic.oup.com
    BiSulfite Bolt: A bisulfite sequencing analysis platform
    1
    1. scibot 12 May 2021
      RRID:SCR_002105

      DOI: 10.1093/gigascience/giab033

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    academic.oup.com/gigascience/article/10/5/giab033/6272610
  21. onlinelibrary.wiley.com onlinelibrary.wiley.com
    The Meishan pig genome reveals structural variation mediated gene expression and phenotypic divergence underlying Asian pig domestication
    1
    1. scibot 11 May 2021
      RRID:SCR_002105

      DOI: 10.1111/1755-0998.13396

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    onlinelibrary.wiley.com/doi/10.1111/1755-0998.13396
  22. cancerdiscovery.aacrjournals.org cancerdiscovery.aacrjournals.org
    Cell of Origin Influences Pancreatic Cancer Subtype
    1
    1. scibot 10 May 2021
      RRID:SCR_002105

      DOI: 10.1158/2159-8290.CD-20-0633

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    cancerdiscovery.aacrjournals.org/content/11/3/660
  23. clincancerres.aacrjournals.org clincancerres.aacrjournals.org
    Alterations in BAP1 are Associated with Cisplatin Resistance Through Inhibition of Apoptosis in Malignant Pleural Mesothelioma (MPM).
    1
    1. scibot 10 May 2021
      RRID:SCR_002105

      DOI: 10.1158/1078-0432.CCR-20-4037

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    clincancerres.aacrjournals.org/content/27/8/2277
  24. www.sciencedirect.com www.sciencedirect.com
    Derivation of Intermediate Pluripotent Stem Cells Amenable to Primordial Germ Cell Specification
    1
    1. scibot 09 May 2021
      RRID:SCR_002105

      DOI: 10.1016/j.stem.2020.11.003

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    sciencedirect.com/science/article/pii/S1934590920305415
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    Adult Neural Stem Cells Are Alerted by Systemic Inflammation through TNF-α Receptor Signaling
    1
    1. scibot 09 May 2021
      RRID:SCR_002105

      DOI: 10.1016/j.stem.2020.10.016

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    sciencedirect.com/science/article/pii/S1934590920305105
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    Repetitive Elements Trigger RIG-I-like Receptor Signaling that Regulates the Emergence of Hematopoietic Stem and Progenitor Cells
    1
    1. scibot 06 May 2021
      RRID:SCR_002105

      DOI: 10.1016/j.immuni.2020.10.007

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    sciencedirect.com/science/article/pii/S1074761320304489
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    A Prion-like Domain in Transcription Factor EBF1 Promotes Phase Separation and Enables B Cell Programming of Progenitor Chromatin
    1
    1. scibot 06 May 2021
      RRID:SCR_002105

      DOI: 10.1016/j.immuni.2020.10.009

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    sciencedirect.com/science/article/pii/S1074761320304507
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    A single-cell analysis of the Arabidopsis vegetative shoot apex
    1
    1. scibot 06 May 2021
      RRID:SCR_002105

      DOI: 10.1016/j.devcel.2021.02.021

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    sciencedirect.com/science/article/pii/S1534580721001611
  29. onlinelibrary.wiley.com onlinelibrary.wiley.com
    How to characterize a strain? Clonal heterogeneity in industrial Saccharomyces influences both phenotypes and heterogeneity in phenotypes
    1
    1. scibot 06 May 2021
      RRID:SCR_002105

      DOI: 10.1002/yea.3562

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    onlinelibrary.wiley.com/doi/10.1002/yea.3562
  30. www.sciencedirect.com www.sciencedirect.com
    Whole-genome analysis of giraffe supports four distinct species
    1
    1. scibot 06 May 2021
      RRID:SCR_002105

      DOI: 10.1016/j.cub.2021.04.033

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    sciencedirect.com/science/article/pii/S0960982221005467
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    Chromatin Accessibility Dynamics and a Hierarchical Transcriptional Regulatory Network Structure for Plant Somatic Embryogenesis
    1
    1. scibot 05 May 2021
      RRID:SCR_002105

      DOI: 10.1016/j.devcel.2020.07.003

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    sciencedirect.com/science/article/pii/S1534580720305517
  32. www.nature.com www.nature.com
    Transcription factor chromatin profiling genome-wide using uliCUT&RUN in single cells and individual blastocysts
    1
    1. scibot 05 May 2021
      RRID:SCR_002105

      DOI: 10.1038/s41596-021-00516-2

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    nature.com/articles/s41596-021-00516-2
  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Nested association mapping reveals the genetic architecture of spike emergence and anthesis timing in intermediate wheatgrass
    1
    1. scibot 01 May 2021
      RRID:SCR_002105

      DOI: 10.1093/g3journal/jkab025

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    ncbi.nlm.nih.gov/pmc/articles/PMC8063084/
  34. Apr 2021
  35. www.sciencedirect.com www.sciencedirect.com
    Recording of DNA-binding events reveals the importance of a repurposed Candida albicans regulatory network for gut commensalism
    1
    1. scibot 29 Apr 2021
      RRID:SCR_002105

      DOI: 10.1016/j.chom.2021.03.019

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    sciencedirect.com/science/article/pii/S1931312821001475
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    5-hydroxymethylcytosine is dynamically regulated during forebrain organoid development and aberrantly altered in Alzheimer’s disease
    1
    1. scibot 28 Apr 2021
      RRID:SCR_002105

      DOI: 10.1016/j.celrep.2021.109042

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    sciencedirect.com/science/article/pii/S2211124721003582
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    Efficient RNA polymerase II pause release requires U2 snRNP function
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    1. scibot 26 Apr 2021
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      DOI: 10.1016/j.molcel.2021.02.016

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    sciencedirect.com/science/article/pii/S109727652100126X
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    A High-Resolution Map of Human Enhancer RNA Loci Characterizes Super-enhancer Activities in Cancer
    1
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      DOI: 10.1016/j.ccell.2020.08.020

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    sciencedirect.com/science/article/pii/S1535610820304311
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    Analysis of Brugada syndrome loci reveals that fine-mapping clustered GWAS hits enhances the annotation of disease-relevant variants
    1
    1. scibot 21 Apr 2021
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      DOI: 10.1016/j.xcrm.2021.100250

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    sciencedirect.com/science/article/pii/S2666379121000665
  40. gigabytejournal.com gigabytejournal.com
    The genome of Tripterygium wilfordii and characterization of the celastrol biosynthesis pathway
    1
    1. scibot 19 Apr 2021
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      DOI: 10.46471/gigabyte.14

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    gigabytejournal.com/articles/14
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    A pan-cancer transcriptome analysis of exitron splicing identifies novel cancer driver genes and neoepitopes
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    1. scibot 16 Apr 2021
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      DOI: 10.1016/j.molcel.2021.03.028

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    sciencedirect.com/science/article/pii/S1097276521002239
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    Cellular mRNA triggers structural transformation of Ebola virus matrix protein VP40 to its essential regulatory form
    1
    1. scibot 14 Apr 2021
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      DOI: 10.1016/j.celrep.2021.108986

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    sciencedirect.com/science/article/pii/S2211124721003004
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Impact of chromatin context on Cas9-induced DNA double-strand break repair pathway balance
    1
    1. scibot 13 Apr 2021
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      DOI: 10.1016/j.molcel.2021.03.032

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    ncbi.nlm.nih.gov/pmc/articles/PMC8153251/
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    The SMC5/6 complex compacts and silences unintegrated HIV-1 DNA and is antagonized by Vpr
    1
    1. scibot 03 Apr 2021
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      DOI: 10.1016/j.chom.2021.03.001

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    sciencedirect.com/science/article/pii/S1931312821001013
  45. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evidence for additive and synergistic action of mammalian enhancers during cell fate determination
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    1. scibot 02 Apr 2021
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      DOI: 10.7554/eLife.65381

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    Transcriptional profiling reveals potential involvement of microvillous TRPM5-expressing cells in viral infection of the olfactory epithelium
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  47. Mar 2021
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    Genomic exploration of the targets of FOXL2 and ESR2 unveils their implication in cell migration, invasion, and adhesion
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    Global analysis of shared T cell specificities in human non-small cell lung cancer enables HLA inference and antigen discovery
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    Comparative analysis of 7 short-read sequencing platforms using the Korean Reference Genome: MGI and Illumina sequencing benchmark for whole-genome sequencing
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    New Insights Into Mitochondrial DNA Reconstruction and Variant Detection in Ancient Samples
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    Germline EGFR variants are over-represented in adolescents and young adults (AYA) with adrenocortical carcinoma
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  55. Feb 2021
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    The glucocorticoid receptor recruits the COMPASS complex to regulate inflammatory transcription at macrophage enhancers
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    Interferon-λ Mediates Non-redundant Front-Line Antiviral Protection against Influenza Virus Infection without Compromising Host Fitness
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    The corepressors GPS2 and SMRT control enhancer and silencer remodeling via eRNA transcription during inflammatory activation of macrophages
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    Quantitative Trait Locus Mapping and Identification of Candidate Genes Controlling Flowering Time in Brassica napus L.
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    Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines
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    Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?
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    Pancreatic progenitor epigenome maps prioritize type 2 diabetes risk genes with roles in development
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    A microbial gene catalog of anaerobic digestion from full-scale biogas plants
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  64. Jan 2021
  65. link.springer.com link.springer.com
    The hard clam genome reveals massive expansion and diversification of inhibitors of apoptosis in Bivalvia
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    Failures of nerve regeneration caused by aging or chronic denervation are rescued by restoring Schwann cell c-Jun
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    Protocol for assaying chromatin accessibility using ATAC-seq in plants
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    Re-expression of SMARCA4/BRG1 in small cell carcinoma of ovary, hypercalcemic type (SCCOHT) promotes an epithelial-like gene signature through an AP-1-dependent mechanism
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    A new duck genome reveals conserved and convergently evolved chromosome architectures of birds and mammals
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    Chromosome-level reference genome of the European wasp spider Argiope bruennichi: a resource for studies on range expansion and evolutionary adaptation
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    Manipulation of the human tRNA pool reveals distinct tRNA sets that act in cellular proliferation or cell cycle arrest
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  72. Dec 2020
  73. www.cell.com www.cell.com
    Circadian VIPergic Neurons of the Suprachiasmatic Nuclei Sculpt the Sleep-Wake Cycle
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    Genome sequencing of deep-sea hydrothermal vent snails reveals adaptions to extreme environments
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    Lineage-Resolved Enhancer and Promoter Usage during a Time Course of Embryogenesis
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    Turnip mosaic virus in oilseed rape activates networks of sRNA-mediated interactions between viral and host genomes
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    Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes
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  78. Nov 2020
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    Three-Dimensional Human Alveolar Stem Cell Culture Models Reveal Infection Response to SARS-CoV-2
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  80. Oct 2020
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    TARGET-Seq: A Protocol for High-Sensitivity Single-Cell Mutational Analysis and Parallel RNA Sequencing
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    Host-induced spermidine production in motile Pseudomonas aeruginosa triggers phagocytic uptake
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  83. Sep 2020
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    Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods
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    Binding of the Treslin-MTBP Complex to Specific Regions of the Human Genome Promotes the Initiation of DNA Replication
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    Recruitment of mRNAs to P granules by condensation with intrinsically-disordered proteins
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    ZCWPW1 is recruited to recombination hotspots by PRDM9 and is essential for meiotic double strand break repair
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    Umbilical cord blood-derived ILC1-like cells constitute a novel precursor for mature KIR+NKG2A- NK cells
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    Introgression of Eastern Chinese and Southern Chinese haplotypes contributes to the improvement of fertility and immunity in European modern pigs
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    Functional and Genomic Variation between Human-Derived Isolates of Lachnospiraceae Reveals Inter- and Intra-Species Diversity
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    C/EBPα and GATA-2 Mutations Induce Bilineage Acute Erythroid Leukemia through Transformation of a Neomorphic Neutrophil-Erythroid Progenitor
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    Atrx Deletion in Neurons Leads to Sexually Dimorphic Dysregulation of miR-137 and Spatial Learning and Memory Deficits
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    Deletion of Stk11 and Fos in mouse BLA projection neurons alters intrinsic excitability and impairs formation of long-term aversive memory
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    Evolution of Yin and Yang isoforms of a chromatin remodeling subunit precedes the creation of two genes
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    The draft genome sequence of the spider Dysdera silvatica (Araneae, Dysderidae): A valuable resource for functional and evolutionary genomic studies in chelicerates
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    Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease
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    The Genomics of Arthrogryposis, a Complex Trait: Candidate Genes and Further Evidence for Oligogenic Inheritance
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    Two Separation-of-Function Isoforms of Human TPP1 Dictate Telomerase Regulation in Somatic and Germ Cells
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    Ammonia Oxidation by the Arctic Terrestrial Thaumarchaeote Candidatus Nitrosocosmicus arcticus Is Stimulated by Increasing Temperatures
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    Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome
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    Genome plasticity in Candida albicans is driven by long repeat sequences
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    Genome and population sequencing of a chromosome-level genome assembly of the Chinese tapertail anchovy ( Coilia nasus ) provides novel insights into migratory adaptation
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    Recurrent SMARCB1 Mutations Reveal a Nucleosome Acidic Patch Interaction Site That Potentiates mSWI/SNF Complex Chromatin Remodeling
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    Genome-wide analysis of the H3K27me3 epigenome and transcriptome in Brassica rapa
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    Chromosomal-level reference genome of Chinese peacock butterfly ( Papilio bianor ) based on third-generation DNA sequencing and Hi-C analysis
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    Active and Repressed Chromatin Domains Exhibit Distinct Nucleosome Segregation during DNA Replication
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    The piRNA Response to Retroviral Invasion of the Koala Genome
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    Comparison of single-nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga toxin–producing Escherichia coli
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    Genome-Edited Triple-Recessive Mutation Alters Seed Dormancy in Wheat
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    High-quality Schistosoma haematobium genome achieved by single-molecule and long-range sequencing
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    Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation
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    MicroRNAs Cause Accelerated Decay of Short-Tailed Target mRNAs
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    Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop
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    CTCF confers local nucleosome resiliency after DNA replication and during mitosis
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    Identification and Analyses of Extra-Cranial and Cranial Rhabdoid Tumor Molecular Subgroups Reveal Tumors with Cytotoxic T Cell Infiltration
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    Chromosomal-level assembly of the blood clam, Scapharca ( Anadara ) broughtonii , using long sequence reads and Hi-C
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    Quantification of Differential Transcription Factor Activity and Multiomics-Based Classification into Activators and Repressors: diffTF
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    Continuous and Discrete Neuron Types of the Adult Murine Striatum
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    Chromosome‐level genome assembly of the razor clam Sinonovacula constricta (Lamarck, 1818)
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    DUX4 Suppresses MHC Class I to Promote Cancer Immune Evasion and Resistance to Checkpoint Blockade
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    RNA sequencing of isolated cell populations expressing human APOL1 G2 risk variant reveals molecular correlates of sickle cell nephropathy in zebrafish podocytes
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    Single-Cell RNA-Seq Reveals Developmental Origins and Ontogenetic Stability of Neurexin Alternative Splicing Profiles
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    Combinatorial action of NF–Y and TALE at embryonic enhancers defines distinct gene expression programs during zygotic genome activation in zebrafish
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    Yeast Sirtuin Family Members Maintain Transcription Homeostasis to Ensure Genome Stability
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    Oligodendrocyte Intrinsic miR-27a Controls Myelination and Remyelination
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    The Dynamics of Cytoplasmic mRNA Metabolism
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    Oncogenic Notch Promotes Long-Range Regulatory Interactions within Hyperconnected 3D Cliques
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    Common workflow language (CWL)-based software pipeline for de novo genome assembly from long- and short-read data
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    Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat
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    Distinct Immune Cell Populations Define Response to Anti-PD-1 Monotherapy and Anti-PD-1/Anti-CTLA-4 Combined Therapy
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    Maternal Ribosomes Are Sufficient for Tissue Diversification during Embryonic Development in C. elegans
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    Unravelling Intratumoral Heterogeneity through High-Sensitivity Single-Cell Mutational Analysis and Parallel RNA Sequencing
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    Genes that Affect Brain Structure and Function Identified by Rare Variant Analyses of Mendelian Neurologic Disease
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    Identification of piRNA Binding Sites Reveals the Argonaute Regulatory Landscape of the C. elegans Germline
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    Zc3h13 Regulates Nuclear RNA m6A Methylation and Mouse Embryonic Stem Cell Self-Renewal
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    Developmental History Provides a Roadmap for the Emergence of Tumor Plasticity
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    The Mouse Microbiome Is Required for Sex-Specific Diurnal Rhythms of Gene Expression and Metabolism
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    Polymer Simulations of Heteromorphic Chromatin Predict the 3D Folding of Complex Genomic Loci
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    RbAp48 Protein Is a Critical Component of GPR158/OCN Signaling and Ameliorates Age-Related Memory Loss
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    The Nuclear Receptor PPARγ Controls Progressive Macrophage Polarization as a Ligand-Insensitive Epigenomic Ratchet of Transcriptional Memory
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    CD8+ T Cell Priming in Established Chronic Viral Infection Preferentially Directs Differentiation of Memory-like Cells for Sustained Immunity
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    Distinct Effector B Cells Induced by Unregulated Toll-like Receptor 7 Contribute to Pathogenic Responses in Systemic Lupus Erythematosus
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    MYC Interacts with the G9a Histone Methyltransferase to Drive Transcriptional Repression and Tumorigenesis
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    A Short Tandem Repeat-Enriched RNA Assembles a Nuclear Compartment to Control Alternative Splicing and Promote Cell Survival
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    Decoding Transcriptome Dynamics of Genome-Encoded Polyadenylation and Autoregulation with Small-Molecule Modulators of Alternative Polyadenylation
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    The Itaconate Pathway Is a Central Regulatory Node Linking Innate Immune Tolerance and Trained Immunity
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    Elongation/Termination Factor Exchange Mediated by PP1 Phosphatase Orchestrates Transcription Termination
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    HOXA9 Reprograms the Enhancer Landscape to Promote Leukemogenesis
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    ZFX Mediates Non-canonical Oncogenic Functions of the Androgen Receptor Splice Variant 7 in Castrate-Resistant Prostate Cancer
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