Disruption of the thalamo-cortical connection
connection to CSTC model of psychedelics' proposition, interesting....
Disruption of the thalamo-cortical connection
connection to CSTC model of psychedelics' proposition, interesting....
Figure 3
States 1, 4, and 6 are the ones that show the biggest discrepancy between non-intoxicated and intoxicated states
herefore, when cannabissmokers are not focused on the external environment, they rathermaximize the utility of self-generated moments
explains why I get so instrospective and aware of my thoughts
Each subject smoked their‘usual joint’: a dose of his/her own preference of his/her owncannabis sample; thus, a variety of species, strains and growingmethods was employed.
true that it definitely increases ecological validity (how well it can be applied to the real world) but also allows for a lot of confounding variables...
alteredstates of consciousness, which are defined as a deviation from thenormal and regular state of mind into hyper- and/or hypo-excitation states
important
Surround SuppressionOverlay Suppression
surround suppresion: what happening around the central stimulus is suppressing the response of neurons
overlay suppression: suppression that happens within the classical receptive field
ontextual Modulation
b option actually facilitates the response, rather than inhibits
Extra-classical Receptive Field
adding in a bunch of extra stuff in the extra-classical receptive field (area surrounding the region of space to which the neuron is tuned) will make the response go down - neurons must be cross communicating (so it becomes non-linear)
Contextual Modulation(primer for Petrov papers – our first discussion class!)
Color Vision is Coarse
Lowpass: processing everything below a particular frequency (color)
**Slide not included, showing same face at diff. spatial frequencies
different orientations
Contrast Sensitivity Function (CSF)
Connection to Psychophysics
*
convert the first image to a filter - everything outside the light is set to zero - last image is exactly what that circled neuron responds to - enables us to present stimuli behaviorally
How are these final two poolingstages achieved?
Striate Neuron
The science of consciousness may be poised at the threshold of revolution, in that radical new perspectives may be required to get to the next level of insight concerning con-sciousness and its connection with the rest of reality.
And I think these radical new perspectives could be exactly what psychedelic research could bring to the table
studies of the physiological and phenomenological effects of DMT; psilocybin for anxi-ety associated with terminal cancer, and for the treatment of obsessive‐compulsive disorder; LSD and MDMA for anxiety associated with life‐threatening illness; MDMA for post‐traumatic stress; psilocybin and LSD for severe headache; and ayahuasca, peyote, ibogaine, and psilocybin for addiction
Revolutionary! This is medicine!
Example 1
Amplitude Spectrum
Spatial Frequency & Fourier Analysis
amplitude, frequency,phase, and orientation
Fourier Analysis
Spatial Frequency
Spatial Frequency
turning off 99% of your neural population when you look at it
the smaller the receptive field, the more likely they're going to respond to small details, the higher spatial frequency it's going to be selective for
Visual Angle
visual angle is a function of distance - depending on where we're sitting in the class, we're getting info from different populations of neurons
per 1° of visual angle
benchmark - 1/3 of a mm is 1degree of visual angle (important) -
& Spatial Frequency
First one: low spatial frequency - increases with each image - last one has the most luminance oscillations, most spatial frequency - big receptive field neurons are extracting information about coarse luminance
Visual Angle & Spatial Frequency
Spatial frequency: the way to measure response characterisitivs of these neurons - idea is to express the stimulus in terms of some level of detail (e.g. the smaller the pixels in an image the more detialed it is) - idea of grain as level of detail, we want ot be able to quantify it, which is where spatial frequency comes in. - ultimately the amount of change in luminance over some pre-defined area of space, how much it is changing from one point to the next point
Visual Angle & Spatial Frequency
sual Angle & Spatial Frequency
Simple Cell Selectivity (Size)
When a simply cell fires, it gives you information about the relative orientation of the stimulus - 1st image: light in both the excitatory and inhibitory, so it's not gonna fire - size slectivity also has a tuning curve
Hyper-columns
neurons selective for all visual orientations also tile in the cortex - both ocular dominance columns from both eyes combined creates a hyper column - visual field is essentially tiled with hyper-columns - it's a population response: there's the possibility that all of them could respond, it just depends on what orientation input is being taken in'
Orientation columns
if input from one eye is dyed, it will staain bands of striate cortex, white patches are the other eye that wasn't stimulated
Orientation)
Leads to concept of tuning curve - has peak preference - have a cell that has a preferred stimulus orientation - if we start to tilt the line, response goes down - as it's rotating, the light bar starts to encroach on the inhibitory cells
Orientation
Simple cells have preferred orientations
Luminance & Color Pathways
3 major pathways 1. selective largely for luninance only 2. red-green channel 3. blue-yellow - All ultimately integrating in the same way
Σ=
Color works the same way
Neuron in Visual Corte
ow are these receptive fields formed?
(Look on next slide) - the thing at the bottom represents the striate cortex - taking projections from a whole slew of ganglion cells - collection of neurons all synapse down onto that single neuron, meaning it's integrating down the inputs from all 12 receptive fields - light is smeared out over space such that it's falling on each of the center of the fields - organization at the top of receptive fields is the same way they're organized in the LGN - excitatory zone is smeared out over space
feelings of anxiety are associ-ated with excessive attention to threat‐related stimuli
internalized disorders' relation to attentional biases is interesting. How does this inform therapy and treatment? - related to idea of psychedelics "clearing the slate" of your mind and its thought patters/biases.
Visual Receptive Fields for Color
Visual Receptive Field
LateralInhibition
two primary types of visual receptivefields which differ in the way they respond whenpresented with light flashes
Two major classes of ganglion cells - defined by how they respond to onset of light - majority of receptive fields are circular - picture is cross section of the receptive field, all the bubbles are photoreceptors - On-center/off-surround, - any spot of light presented in the center of the region will produce excitatory response - how to maximally activate the ganglion cell? - something bright in the center with dark background
Visual & Receptive Fields
Important distinction - Visual field: area of space out in front of you that you're trying to perceive and process - Receptive field: surface area of the retina that when activated, creates a corresponding activation on the final receptor cell (ganglion cell)
acuity
In first image, when two spots are activating only one photoreceptor, only one ganglion cell, person would only be able to perceive one dot
Convergence leads to high sensitivity, but at thecost of poor visual acuity (or visual resolution
The more pooling that is done, the lower the resolution
The rod system has a higher probability ofdetecting photons, and thus this system is much moresensitive. 2) The cone system has higher resolution and is thussuited for detail vision
IMPORTANT TRADEOFF
Ganglion Cells
rod system exhibits much more converision than the cone system, increases as you move
The distribution of rods and cones in the retina is notuniform:
Huge concentration of cones in the fovea - No rods in the fovea - **Not an even distribution a
Photoreceptor
Rods vs. Cones - outer segments (top) are where the photons are absorbed, the energy of light is coming in, energy ultimately creates an ion chain propogating down - Cones - Rods: nighttime vision (very sensitive), bad at detajks, don't see detail
he retina consists of five different types of neuronswhich can be broken up into two processing streams
he Human Retina
Transduced Image
The Human Retina
Refraction
That's what creates the proximal stimulus
light coming in directly in the center of our visual system is refracted very little
refractive indices
Measure of the amount the photoreceptors in the eye will refract or bend the light - how much light is deviated (bent) from its orignial sources - function of how the energy interacts with the medium (shorter wavelengths are deviated more)
Photoreceptors in the retina absorb photon
The Stimulus For Vision
The Stimulus For Vision
Openangle
direct access to the exit point
closed angle
so as the fluid comes in, it builds up and bulges against the wall
whole eye swells
Glaucoma
Limbus
Anterior SegmentLimbus
Limbus: region between the cornea and the sclera (transition zone) - houses canal of schlemm - contains stem cells for regenerating surface of the cornea - Posterior Chamber - Anterior Chamber - both are filled with aqueous humor (produced by the ciliary body) - flows underneath posterior chamber, eventually into the anterior - eventually drains out through the canal
Iris & Pupil
Iris is a set of muscles - two main muscles controlling this - majority of adjustments are made by sphincter muscles - fine-tune adjustments are done by the dilator muscle
Astigmatism
Presbyopia
Hyperopia
Two main types as well - Refractive - optical power is weaker, ends up resolving the image somewhere behind the retina - cannot converge the image fast enough to - Axial - results in partially resolved image
Myopia
The Human Eye: Cornea & Lens
Clinical Vision: Cataract
The Human Eye: Cornea & Lens
he Human Eye
Everything before the line: Anterior segment - Cornea: clear part - main optical element of the eye - focuses the image on the eye - Iris - band of muscles - automated function, controls the diameter of the pupil - ultimately controls the amount of light that goes into the eye - works together with the pupil - trying to keep the amount of light entering the eye consistent - when you're aroused, your pupils dilate, and faces that have larger pupils are rated as more attractive (so you make yourself more attractive to those) - Lens - made up of structures that can stretch and bend - it by itself does nothing, it's being acted upon by the muscles around it - helps to percieve different distances - Zonule - aka suspensatory ligaments - attach the lens to the Cilliary process - what hold the - Ciliary Body - ciliar muscles (three bands) ultimately responsible for controlling the lens (pulling on it, constricting) - Ciliary process - Canal of Schlemm - series of ducts that wrap around the circumference of the cornea - diverting aqueous - Retina - primary nerve fiber layer - transduction begins here - Fovea - what you're focusing on gets projected directly onto it - give you central vision - optic nerve - Choroid - vasular layer, getting blood supply to and from our retina, giving the neurons oxygen - job is to the feed the neurons in our retina - Sclera - white part - extremely dense - material that makes up the scera and cornea is exactly the same: collagen fibers
Confusion Matrix
Validate the ClassifierEmotion1, 2, or 3?
Take another part of the data that the classifier has never seen before, feed it into the classifier, and ask it to identify which emotion (category) it is - then calculate percentage correct of the machine - making sure the pattern is reliable (if it is, you would be able to put in the rest of the emotion 1 data, and it would identify it as emotion 1)
Training the Classifier
BOLD Signals gathered tobe used in training theclassifier (i.e., training data
Multivariate Pattern Classification
Graph is a subset of voxels - looking at the activity of each one of the voxels - can see a pattern of activity distributed across the voxels, then we ask if there is something about the pattern of responses that is representative of the particular emotion - if we switch to a new emotion, it is crucial to be able to see a different pattern
Limitations of Activation-based Analyses
**VERY IMPORTANT - Activation-based approach: looking for general increases in activity - boxcar designs are still used today, but not as often (not as detailed as modern methods) - big limitation: can be misleading in terms of what networks are activated - E.g. looking at whether a certain brain region is responsible for recognizing different human emotions, record activity for each expression (set of faces), average the voxel patterns, subtract the control - question: can this brain region tell the difference (looking for general differences in activity) - in this example, answer would be no since the results are all so similar
A note on resolution....
Stronger the magnet, higher the resolution - keep in mind recording is 3-dimensional - so pixels are 3-D (referred to as voxels) - voxel: smallest unit of resolution for this technique - 3-T can get you approximately down to 1mm cubes, which can hold a lot of neurons, so we're always making inference about the activity of a population
BOLD & inferred neural activit
What does “activation” mean?
functional Magnetic Resonance Imaging (fMRI)
Standard "block designs" (aka box car design) - Method of subtraction: Take the difference between brain activity of experimental condition and control, creating a difference image - Issue with calculating a mean difference image: assumes everybody's brain is the same, which is not the case - Solution: putting everybody's activity brain into a standardized brain space (MNI) (involves warping) - Coordinates of where the activity was taking place is called Talairach coordinates - Big issue with this approach too: blurs the data
Two primary components:
often lower resolution, because it's measuring vascularization, the changes in oxygenation in the blood
Have to take both
The change in the oxy-hemoglobin to deoxy-hemoglobin ratio results in an increase inoxy-hemo in the venous system
The hemoglobin has a particular magnetic field when it's oxygenated, which changes when it become de-oxygenated
hemodynamics
How blood is moving thru the arteries in the brain - Arterial: Fully oxygenated blood going to a particular region - Venous system: returning some oxygenated blood - looking at the relative changes in the oxygenated blood (because that's indicative of how active certain parts of the brain are) - brain picks up on signals, sends more oxygenated blood there as a result - when a part of the brain becomes active, we see a little little dip in oxygenation (as the neurons use the oxygen in the blood) and then we see a huge increase in oxygenated blood as the brain compensates (usually overkill) - not necssarily a represation of how active the brain region was - measuring a correlate of neural activity and oxygenation
functional Magnetic Resonance Imaging (fMRI)
Magnetoencephalography (MEG)
Magnetoencephalography (
Much much better than EEG at localizing the source - magnetic field does NOT interact with the skull, it diffuses across the skull - purpose is to get both spatial and temporal precision - largely dominated by signal within sulci (sulcal walls) *no assumptions are made regarding excitatory or inhibitory signals
Magnetoencephalography (MEG)200 ms poststimulus onset
Data looks virtually identical to EEG - look at deflections relative to baseline - very sensitive, high resolution temporal data
Magnetoencephalograph
Electroencephalograph
Electroencephalography
There are varied numbers of ways to estimate where the source is coming from - best way to do is use the participants anatomy of the brain - ideally using MRI
Electroencephalography (EEG
Great for timing of neural responses, the temporal dynamics - source localization issue: hard to figure out where the signal is coming from - Why is it hard? - if there are two gyral crowns pointed in the same direction, they're gonna sum together - electric potentials interact signficantly with the skull, it can even bounce
Action potentials are too fas
Need thousands of neurons to measure with EEG Membrane potentials are actually whats being recorded, not action potentials - when there's a bunch
majority of the signals come from the gyral crown/surface
largely a cortical measure, harder to measure subcortical signals
the apicaldendrites and the basaldendrites and cell body form asmall electric dipole
Basal dendrites will depolarize Apical dendrites will hyperpolarize - creates an electrical field as a current begins to flow - simultaneously, there is a horizontal magnetic field (measured by MEGs)
EEG
Pyramidal neuron being shown, most common in the brain - dendrites that come straight off then basal - dendrites extending way out are apical dendrites
Electroencephalography
Traditional way is to look at one electrode - how is the voltage changing overtime from one electrode - deviation from baseline is indicative of some sort of potential occuring - P1: "component", significant deviation from baseline
EEG
Topographic plot - can look at the entire surface, changes in positive/negative potential - key element: when is a process active (how those processes are changing overtime)
EEG
neurons become active, they generate electromagnetic fields, strong enough to leak across the scalp, so macro-electrodes on the surface of the skull can be used to measure the brain energy - easily affected by motor potentials, contaminates the trial - very temporaly sensitive, can get a lot of data all at once
in vivo single-unit recording)
each row is.a different recording from the same neuron
For visualization purposes,
Correlation between stimulation and activity - build a spike train - spreadsheet, put a 0 when there's no activity, 1 when there is
(in vivo single-unit recording)
How do you find where the electrode is going - end of the day, you don't really know - can reverse the flow of the current, deliver an electric shock to the animal's brain, kill them, take out the brain and find out if it was in the correct place - have to adjust the sensitivity theshold of the electrode, basically how far out the field of recording can be (with single-unit, has to be dialed up) - even when single-unit recording, chances are you're usually picking up a couple neurons - setting a high enough threshold on the recording amplifier enables one to record from a single or very small number of neurons
Awake/Alert
n Vivo
Measuring neurons within their natural environment (within the orgnaism) - electrical stimulation
In Vitro
Taking the tissue out of the organism, keeping it alive and studying them that way
Response Space
In a single-interval paradigm, you have a very small response base - Hit: accurate - Correct rejection: accurate - False alarm: inaccurate - Miss: inaccurate
We’re interested in the ability of human participants tosuccessfully discriminate between different faces
Open response (some caveats...)
n
more than 2
2 Alternative/Interval Forced-Choice (2AFC / 2IFC)
Response Design Method
How the response is being recorded
Single interval
One thing is presented very quickly, yes or no
Method of adjustment (some caveats...
Staircase procedures
Method of constant stimul
d-prime
Separation: distance between two states of the system Normalized by the variance (response distributions)
Basically a t-test: difference in the means divided by pooled variance When you have these values, you can estimate the bias
D-prime caps out at 4 If it's at 1, it's at threshold A negative d-prime means the participant is operating below chance, and therefore not doing the task correctly (probably didn't understand the task)
Criterion
Criterion: the participant's own decision-making, can get in the way and contaminate the percent correct, bias of the participant, odd measure of the underlying response mechanism Blue: Correct reject Green: Miss Pink: Hit Orange: False alarm
Estimating sensitivity can allow for minimizing the effect of the criterion
Stimulus signa
Higher action potential - how far away does this response distribution need to be from the noise signal before we can pick up on it
Noise signal
The base noise in the system (lights you see when you close your eyes)
irtue” refers both to excellences of character (es-pecially benevolence and humility) and to a kind of ethical charisma that results from the possession of these excellences
relates to reading in chinese philosophy, achieved through attaining wu-wei
Jersey side
This is referring to the view of New York city from New Jersey, which is the epitome of an urban environment.
“We are the stuff of stars,” Sagan says.
The quote from Carl Sagan, a famous American astronomer, planetary scientist, cosmologist, and astrophysicist, is the perfect closing stanza for this poem. Sagan emphasizes the fact that everything on earth, plants, animals, and humans are all products of the sun, which is simply one of billions of stars.
I found this short video of Carl Sagan that explains this concept further, which I found very enlightening. He explains how the origin of all life comes from the stars, so that not only our existence, but the process of our creation and development comes from solar energy as well. https://youtu.be/tLPkpBN6bEI
her monkey rulers she will have to throw off into space
The "monkey rulers" seems to be a metaphor for the human race, us eventually being thrown "off into space" is a metaphor for our eventual extinction. The wording here also suggests our insignificance to the Earth, that we're just hanging on "her back" and can be easily expelled.
We map our way with only the bearing of surrounding life itself borderless uncontrolled by the surface of our self.
This section of the poem was confusing to me; I don't completely understand the symbolism of the deep well, the light without shadow, and the "circumference." I interpreted this as a reference to the inevitable extinction of humankind.
According to Peter Brannen's "Anthopocen is a Joke," is tens or hundred of millions of years, any trace of human life or the legacy we left behind will completely buried underneath layers and layers of rock, and will be extremely unlikely to ever be exposed again. Essentially, there will be no indication that we ever existed.
I think the poem is referencing this idea here, the phrase "[the length of death's shadow] is the same cast everywhere as deep; no one's is further from death than another's" alluding to the big-picture insignificance of the human race.
Source: https://www.theatlantic.com/science/archive/2019/08/arrogance-anthropocene/595795/
to wash that the dirt on her feet cracks into sores the skin of her soles and steps her in one more shit infection she has to kick,
Is the "she" here referring to planet Earth? If so, is this metaphor alluding to the issues of climate change humans have imposed upon the planet; the dirt and sores and infection being representations of pollution, greenhouse gases, depletion of nonrenewable resource, deforestation, etc.?
The bridge towers of the Verrazano are so far apart they tilt away from each other on the curve of the earth factored in.
The Verrazano is a suspension bridge in Staten-Island, New York, spanning 13,700 feet in length. I really like this part of the poem, as it points out that even though this bridge is very long and very strong, it is still fundamentally affected by the Earth itself. I find this to be a strong yet subtle message about the concept that no matter how big of an impact we think we are making on the planet, we can't even begin to fathom how little we actually are. The Earth doesn't bend to our will, we bend to its.
bearing even from deep within them, let you see them from inside their formation.
Here, geologic formations and structures are contrasted with built ones (e.g. mountains vs. skyscrapers) in the sense that geologic formations have existed for much longer and thus have exponentially greater bearing on the planet. What is on the outside of, say, a mountain, was once on the inside, either raised up from the earth by the collision of tectonic plates, or spewed out by volcanic eruptions and hardened into their structures.
on mountains from the vantage of the plain, on the towers from the vantage of the dirt-stiffened, unyielding, tarmac of marsh grass
This is another allusion to the built environment, in comparison to the natural environment. The "dirt-stiffened, unyielding, tarmac of marsh grass" seems to be referring to the man-made "natural" areas that are simply illusions of what used to be.
When they’re there in the evening, we safely assume the world hasn’t gone anywhere;
Commenting on the ignorance of humans, and the way we forget about out impact on the environment, including animals. We often see nature, but just as often forget that there used to be so much more of it, and how much destruction and harm we've caused to it over the time period of the Anthropocene.
corps
I find the word choice here to be clever and significant; the word "corps" technically means a squadron of armed forces, or a specialized branch of the military. Here, the use of the word suggests that mankind's use of technology has become a sort of troop in itself, bulldozing the natural landscape to shape it to their own desires, locked in a figurative and literal battle against nature.
Here it's flat and densely packed with people
This is referring to urban landscapes, in contrast to rural. It is flat because that is the way humans have manually constructed it to be: our own built environment that is far from natural.
or if they ever stood completely over their own shade's dot that moment they had no metered footprint
This seems to be a reference to how dependent humans have become on technology as tools for things as simple as telling the time; no one would think to use the age-old and natural tool of light and shadows anymore to gauge the hour of the day. The question is: is this a positive or a negative? Because of technology we live life with much more convenience than ever before, but in this process of development have we lost touch with nature, and the organic tools with which the Earth provides us?
Eclogue
Eclogue definition: A short pastoral poem on the subject of rural life and the society of shepherds, depicting rural life as a sort of freedom from the complications and corruption of urban civilization.
gnomon
Gnomen definition: the piece on a sundial that projects a shadow indicating the time by its length and position
about the footprint we may leave
I think this is referring to our ecological footprint that we as humans leave on the Earth. The connotation of these few stanzas is very bleak and cold, suggesting the grim fate of the human race in the future.