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    The Drosophila adult midgut progenitor cells arise from asymmetric divisions of neuroblast-like cells
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    The immune landscape of murine skeletal muscle regeneration and aging
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    Glioblastoma functional heterogeneity and enrichment of cancer stem cells with tumor recurrence
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    sciencedirect.com/science/article/pii/S0896627324007335
  5. Nov 2024
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    Control of Murine Brown Adipocyte Development by GATA6
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    Type III interferons induce pyroptosis in gut epithelial cells and impair mucosal repair
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    sciencedirect.com/science/article/pii/S0092867424011589
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    NF-ΚB Activation as a Key Driver in Chronic Lymphocytic Leukemia Evolution to Richter’s Syndrome: Unraveling the Influence of Immune Microenvironment Dynamics
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      DOI: 10.3390/genes15111434

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    Age-Associated Contraction of Tumor-Specific T Cells Impairs Antitumor Immunity
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    Astrocyte allocation during brain development is controlled by Tcf4-mediated fate restriction
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  13. Oct 2024
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    Biomarker analyses investigating disease biology and associations with outcomes in the JAVELIN Merkel 200 trial of avelumab in metastatic Merkel cell carcinoma
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    H3.3 G34W Promotes Growth and Impedes Differentiation of Osteoblast-Like Mesenchymal Progenitors in Giant Cell Tumor of Bone
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    aacrjournals.org/cancerdiscovery/article/10/12/1968/2414/H3-3-G34W-Promotes-Growth-and-Impedes
  16. Sep 2024
  17. elifesciences.org elifesciences.org
    Muscle-resident mesenchymal progenitors sense and repair peripheral nerve injury via the GDNF-BDNF axis
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      DOI: 10.7554/eLife.97662

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    Single-cell and bulk transcriptional profiling of mouse ovaries reveals novel genes and pathways associated with DNA damage response in oocytes
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    A PD-1-targeted, receptor-masked IL-2 immunocytokine that engages IL-2Rα strengthens T cell-mediated anti-tumor therapies
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    Exploring the role of KIR3DL2 on NK cells in hepatocellular carcinoma and its potential prognostic implications
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    Reconstitution of the Multiple Myeloma Microenvironment Following Lymphodepletion with BCMA CAR-T Therapy
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    Positional information modulates transient regeneration-activated cell states during vertebrate appendage regeneration.
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    Spontaneously regenerative corticospinal neurons in mice
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    Inferring Characteristics of the Tumor Immune Microenvironment of Patients with HNSCC from Single-Cell Transcriptomics of Peripheral Blood
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    Blockade of IL1β and PD1 with Combination Chemotherapy Reduces Systemic Myeloid Suppression in Metastatic Pancreatic Cancer with Heterogeneous Effects in the Tumor
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    Regulatory mechanisms orchestrating cellular diversity of Cd36+ olfactory sensory neurons revealed by scRNA-seq and scATAC-seq analysis
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    sciencedirect.com/science/article/pii/S2211124724010222
  27. Aug 2024
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    Genetic association with autoimmune diseases identifies molecular mechanisms of coronary artery disease
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    Mitochondrial serine catabolism safeguards maintenance of the hematopoietic stem cell pool in homeostasis and injury
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    Single-cell dissection of the human blood-brain barrier and glioma blood-tumor barrier
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    Experimental and Computational Methods for Allelic Imbalance Analysis from Single-Nucleus RNA-seq Data
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    Functional Contribution and Clinical Implication of Cancer-Associated Fibroblasts in Glioblastoma
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    Transient Differentiation-State Plasticity Occurs During Acute Lymphoblastic Leukemia Initiation
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    Light and dopamine impact two circadian neurons to promote morning wakefulness
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    Time- and cell-specific activation of BMP signaling restrains chondrocyte hypertrophy
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    Inhibiting interferon-γ induced cancer intrinsic TNFRSF14 elevation restrains the malignant progression of glioblastoma
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    Formate supplementation enhances anti-tumor CD8+ T cell fitness and efficacy of PD-1 blockade
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      DOI: 10.1158/2159-8290.CD-22-1301

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  38. Jul 2024
  39. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Epigenetic Induction of Cancer-Testis Antigens and Endogenous Retroviruses at Single-Cell Level Enhances Immune Recognition and Response in Glioma
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  40. www.cell.com www.cell.com
    Innate immune training restores pro-reparative myeloid functions to promote remyelination in the aged central nervous system
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    Analyzing embryo dormancy at single-cell resolution reveals dynamic transcriptional responses and activation of integrin-Yap/Taz prosurvival signaling
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    Single-cell RNA Sequencing Identifies a Novel Subtype of Microglia with High Cd74 Expression that Facilitates White Matter Inflammation During Chronic Cerebral Hypoperfusion
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      DOI: 10.1007/s11064-024-04206-9

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    link.springer.com/article/10.1007/s11064-024-04206-9
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Integrated single cell-RNA sequencing and Mendelian randomization for ischemic stroke and metabolic syndrome
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    Preclinical study and phase II trial of adapting low-dose radiotherapy to immunotherapy in small cell lung cancer
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      DOI: 10.1016/j.medj.2024.06.002

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  45. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    ALDH1A3-acetaldehyde metabolism potentiates transcriptional heterogeneity in melanoma
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      DOI: 10.1016/j.celrep.2024.114406

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  46. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Synaptic plasticity in human thalamocortical assembloids
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    ncbi.nlm.nih.gov/pmc/articles/PMC11407288/
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    Mitochondrial perturbation in the intestine causes microbiota-dependent injury and gene signatures discriminative of inflammatory disease
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    Variant-to-function analysis of the childhood obesity chr12q13 locus implicates rs7132908 as a causal variant within the 3′ UTR of FAIM2
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    Characterizing enteric neurons in dopamine transporter (DAT)-Cre reporter mice reveals dopaminergic subtypes with dual-transmitter content
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    Transgenic tools targeting the basal ganglia reveal both evolutionary conservation and specialization of neural circuits in zebrafish
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    Single-nucleus RNA sequencing demonstrates an autosomal dominant Alzheimer’s disease profile and possible mechanisms of disease protection
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    Single-cell and bulk transcriptional profiling of mouse ovaries reveals novel genes and pathways associated with DNA damage response in oocytes
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  92. www.embopress.org www.embopress.org
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  93. www.biorxiv.org www.biorxiv.org
    A Mutation-driven oncofetal regression fuels phenotypic plasticity in colorectal cancer
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  94. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Comparative transcriptomic analysis of bovine mesenchymal stromal cells reveals tissue-source and species-specific differences
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  95. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  96. www.sciencedirect.com www.sciencedirect.com
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  97. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    PD-1 blockade induces reactivation of non-productive T cell responses characterized by NF-kB signaling in patients with pancreatic cancer
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  98. Jan 2024
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    Dietary folate and cofactors accelerate age-dependent p16 epimutation to promote intestinal tumorigenesis
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    Establishing a 3D culture system for early organogenesis of monkey embryos ex vivo and single-cell transcriptome analysis of cultured embryos
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    PRDM3/16 Regulate Chromatin Accessibility Required for NKX2-1 Mediated Alveolar Epithelial Differentiation and Function
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    Single-cell transcriptomics of the immune system in ME/CFS at baseline and following symptom provocation
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    A clinical trial of therapeutic vaccination in lymphoma with serial tumor sampling and single cell analysis
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  104. www.nature.com www.nature.com
    A new genomic framework to categorize pediatric acute myeloid leukemia
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    Endothelial Jagged1 levels and distribution are post-transcriptionally controlled by ZFP36 decay proteins
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    Intercellular crosstalk shapes purinergic metabolism and signaling in cancer cells
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  107. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    β-catenin-driven differentiation is a tissue-specific epigenetic vulnerability in adrenal cancer
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    Trem2 expression in microglia is required to maintain normal neuronal bioenergetics during development
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  109. Dec 2023
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    Molecular organization of neuronal cell types and neuromodulatory systems in the zebrafish telencephalon
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    HAMSAB diet ameliorates dysfunctional signaling in pancreatic islets in autoimmune diabetes
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    Canonical IRE1 function needed to sustain vigorous natural killer cell proliferation during viral infection.
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    mRNA COVID-19 vaccine elicits potent adaptive immune response without the acute inflammation of SARS-CoV-2 infection
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    AA2P-mediated DNA demethylation synergizes with stem cell agonists to promote expansion of hematopoietic stem cells
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    Integrated multi-omics profiling to dissect the spatiotemporal evolution of metastatic hepatocellular carcinoma
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  117. www.nature.com www.nature.com
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  118. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Deciphering the distinct transcriptomic and gene regulatory map in adult macaque basal ganglia cells
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  119. www.science.org www.science.org
    A single-cell multi-omic atlas spanning the adult rhesus macaque brain
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  120. 52.53.155.43 52.53.155.43
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  121. 52.53.155.43 52.53.155.43
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  122. Nov 2023
  123. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Truncated radial glia as a common precursor in the late corticogenesis of gyrencephalic mammals
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    Structured wound angiogenesis instructs mesenchymal barrier compartments in the regenerating nerve
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    Hypoxia-sensitive cells trigger NK cell activation via the KLF4-ASH1L-ICAM-1 axis, contributing to impairment in the rat epididymis
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  126. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Cancer-prone Phenotypes and Gene Expression Heterogeneity at Single-cell Resolution in Cigarette-smoking Lungs
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  127. www.biorxiv.org www.biorxiv.org
    Age-induced midbrain-striatum assembloids model early phenotypes of Parkinson’s disease
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    Integrative multi-omic profiling of adult mouse brain endothelial cells and potential implications in Alzheimer’s disease
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    Clinical Efficacy of ONC201 in H3K27M-Mutant Diffuse Midline Gliomas Is Driven by Disruption of Integrated Metabolic and Epigenetic Pathways
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    Single-cell transcriptomics identifies a WNT7A-FZD5 signaling axis that maintains fallopian tube stem cells in patient-derived organoids
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  131. Oct 2023
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    Alpha-1 adrenergic signaling drives cardiac regeneration via extracellular matrix remodeling transcriptional program in zebrafish macrophages
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  133. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-cell transcriptomics illuminates regulatory steps driving anterior-posterior patterning of Drosophila embryonic mesoderm
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    Cerebral organoids derived from patients with Alzheimer’s disease with PSEN1/2 mutations have defective tissue patterning and altered development
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  135. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Unedited allogeneic iNKT cells show extended persistence in MHC-mismatched canine recipients
    1
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  136. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-cell transcriptome analysis illuminating the characteristics of species-specific innate immune responses against viral infections
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  137. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A single-cell multi-omic atlas spanning the adult rhesus macaque brain
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  138. 52.53.155.43 52.53.155.43
    BRI2-mediated regulation of TREM2 processing in microglia and its potential implications for Alzheimer’s disease and related dementias
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  139. www.sciencedirect.com www.sciencedirect.com
    Complement factor D targeting protects endotheliopathy in organoid and monkey models of COVID-19
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  140. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A prognostic matrix code defines functional glioblastoma phenotypes and niches
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  141. 52.53.155.43 52.53.155.43
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  142. www.cell.com www.cell.com
    Single-cell transcriptome profiling reveals immune and stromal cell heterogeneity in primary Sjögren’s syndrome
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    cell.com/iscience/abstract/S2589-0042(23)02020-5
  143. Sep 2023
  144. www.sciencedirect.com www.sciencedirect.com
    Single-cell atlas reveals correlates of high cognitive function, dementia, and resilience to Alzheimer’s disease pathology
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  145. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Highly multiplexed spatial analysis identifies tissue-resident memory T cells as drivers of ulcerative and immune checkpoint inhibitor induced colitis
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  146. www.sciencedirect.com www.sciencedirect.com
    Single-cell multi-omics defines the cell-type-specific impact of splicing aberrations in human hematopoietic clonal outgrowths
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  147. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-Cell RNA sequencing investigation of female-male differences under PAD conditions
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  148. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Spatially Distinct Otic Mesenchyme Cells show Molecular and Functional Heterogeneity Patterns Before Hearing Onset
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  149. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Enrichment of carcinogen-driven “mitochondria-primed” human skin stem cells and their identification using single-cell analyses
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  150. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Metabolic signature and proteasome activity controls synovial migration of CDC42hi CD14+ cells in rheumatoid arthritis
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    Brain-region-specific changes in neurons and glia and dysregulation of dopamine signaling in Grin2a mutant mice
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  152. Aug 2023
  153. www.biorxiv.org www.biorxiv.org
    Variant-to-function analysis of the childhood obesity chr12q13 locus implicates rs7132908 as a causal variant within the 3’ UTR of FAIM2
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  154. www.sciencedirect.com www.sciencedirect.com
    Interaction of an α-synuclein epitope with HLA-DRB1∗15:01 triggers enteric features in mice reminiscent of prodromal Parkinson’s disease
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  155. www.sciencedirect.com www.sciencedirect.com
    Rapid RGR-dependent visual pigment recycling is mediated by the RPE and specialized Müller glia
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  156. www.sciencedirect.com www.sciencedirect.com
    Single-cell analysis of the developing human ovary defines distinct insights into ovarian somatic and germline progenitors
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  157. 52.53.155.43 52.53.155.43
    Homeostatic PD-1 signaling restrains EOMES-dependent oligoclonal expansion of liver-resident CD8 T cells
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  158. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genetic ablation of ketohexokinase C isoform impairs pancreatic cancer development
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  159. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Distinct mechanisms of mismatch repair deficiency delineate two modes of response to PD-1 immunotherapy in endometrial carcinoma
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      DOI: 10.1158/2159-8290.CD-22-0686

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  160. dx.doi.org dx.doi.org
    Integrative single-cell and bulk transcriptomes analyses identify intrinsic HNSCC subtypes with distinct prognoses and therapeutic vulnerabilities
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    Early clonal extinction in glioblastoma progression revealed by genetic barcoding
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  162. www.sciencedirect.com www.sciencedirect.com
    Sex shapes cell-type-specific transcriptional signatures of stress exposure in the mouse hypothalamus
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  163. Jul 2023
  164. www.sciencedirect.com www.sciencedirect.com
    Temporal transcriptome features identify early skeletal commitment during human epiphysis development at single-cell resolution
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    FOXC2 promotes vasculogenic mimicry and resistance to anti-angiogenic therapy
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    sox1a:eGFP transgenic line and single-cell transcriptomics reveal the origin of zebrafish intraspinal serotonergic neurons
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  167. www.sciencedirect.com www.sciencedirect.com
    Cross-organ single-cell transcriptome profiling reveals macrophage and dendritic cell heterogeneity in zebrafish
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  168. www.sciencedirect.com www.sciencedirect.com
    Title: TET1 Facilitates Specification of Early Human Lineages including Germ Cells
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  169. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A single-cell atlas of the sexually dimorphic Drosophila foreleg and its sensory organs during development
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      DOI: 10.1371/journal.pbio.3002148

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  170. www.sciencedirect.com www.sciencedirect.com
    Single-cell transcriptome atlas of Drosophila gastrula 2.0
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  171. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Obesity during preclinical Alzheimer's disease development exacerbates brain metabolic decline
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  172. Jun 2023
  173. 52.53.155.43 52.53.155.43
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  174. www.sciencedirect.com www.sciencedirect.com
    Transcriptomic landscape of early hair follicle and epidermal development
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  175. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Single-cell RNA-seq uncovers novel metabolic functions of Schwann cells beyond myelination
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    The maturation and aging trajectory of Marchantia polymorpha at single-cell resolution
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  177. www.medrxiv.org www.medrxiv.org
    Metabolic signature and proteasome activity controls synovial migration of CDC42hiCD14+ cells in rheumatoid arthritis
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      DOI: 10.1101/2023.06.15.23291416

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  178. www.sciencedirect.com www.sciencedirect.com
    Organized B cell sites in cartilaginous fishes reveal the evolutionary foundation of germinal centers
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  181. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    iBRIDGE: A Data Integration Method to Identify Inflamed Tumors from Single-Cell RNAseq Data and Differentiate Cell Type–Specific Markers of Immune-Cell Infiltration
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    Aldehyde Dehydrogenase, a Marker of Normal and Malignant Stem Cells, Typifies Mesenchymal Progenitors in Perivascular Niches
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    Integrated spatial transcriptome and metabolism study reveals metabolic heterogeneity in human injured brain
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  184. May 2023
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    Efficient self-organization of blastoids solely from mouse ESCs is facilitated by transient reactivation of 2C gene network
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    Transcriptional dynamics of delaminating neuroblasts in the mouse otic vesicle
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    Integrative transcriptomics and cell systems analyses reveal protective pathways controlled by Igfbp-3 in anthracycline-induced cardiotoxicity
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    Phenotypic diversity of T cells in human primary and metastatic brain tumors revealed by multiomic interrogation
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    Metaphocytes are IL-22BP-producing cells regulated by ETS transcription factor Spic and essential for zebrafish barrier immunity
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    Analysis of candidate genes for cleft lip ± cleft palate using murine single-cell expression data
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    Immune mechanisms shape the clonal landscape during early progression of prostate cancer
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  199. Apr 2023
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  201. Mar 2023
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    A transcriptionally distinct subset of influenza-specific effector memory B cells predicts long-lived antibody responses to vaccination in humans
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    Epigenetic dosage identifies two major and functionally distinct β cell subtypes
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    Bone marrow Adipoq-lineage progenitors are a major cellular source of M-CSF that dominates bone marrow macrophage development, osteoclastogenesis, and bone mass
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    Multimodal mapping of cell types and projections in the central nucleus of the amygdala
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    Endothelial and Leptin Receptor+ cells promote the maintenance of stem cells and hematopoiesis in early postnatal murine bone marrow
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    Single-cell transcriptomic profiling redefines the origin and specification of early adrenogonadal progenitors
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    Genes critical for development and differentiation of dopaminergic neurons are downregulated in Parkinson’s disease
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    The developmental basis of fingerprint pattern formation and variation
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    Single-cell analysis in lung adenocarcinoma implicates RNA editing in cancer innate immunity and patient prognosis
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  214. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    Single-cell RNA-seq analysis reveals dual sensing of HIV-1 in blood Axl+ dendritic cells
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    Intermittent fasting induces rapid hepatocyte proliferation to restore the hepatostat in the mouse liver
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