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Feb 2023
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Scaffold coupling: ERK activation by trans-phosphorylation across different scaffold protein species

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ncbi.nlm.nih.gov/pmc/articles/PMC9931222/
Jan 2023
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N-glycosylated intestinal protein BCF-1 shapes microbial colonization by binding bacteria via its fimbrial protein

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Tyrosine kinase inhibitors can activate the NLRP3 inflammasome in myeloid cells through lysosomal damage and cell lysis

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  DOI: 10.1126/scisignal.abh1083
  
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Cyclin E-induced replicative stress drives p53-dependent whole-genome duplication

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Dynamics of CLIMP-63 S-acylation control ER morphology

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ncbi.nlm.nih.gov/pmc/articles/PMC9844198/
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Decreasing mutant ATXN1 nuclear localization improves a spectrum of SCA1-like phenotypes and brain region transcriptomic profiles

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  DOI: 10.1016/j.neuron.2022.11.017
  
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sciencedirect.com/science/article/pii/S0896627322010716
Dec 2022
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Anp32a Promotes Neuronal Regeneration after Spinal Cord Injury of Zebrafish Embryos

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  DOI: 10.3390/ijms232415921
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9786895/
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Chromatin-associated YTHDC1 coordinates heat-induced reprogramming of gene expression

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Structural visualization of the tubulin folding pathway directed by human chaperonin TRiC/CCT

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The insulin and IGF signaling pathway sustains breast cancer stem cells by IRS2/PI3K-mediated regulation of MYC

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Cav1.3 L-type Ca2+ channel-activated CaMKII/ERK2 pathway in the ventral tegmental area is required for cocaine conditioned place preference

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Neuronal IRE-1 coordinates an organism-wide cold stress response by regulating fat metabolism

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Nov 2022
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Structural insights into caspase ADPR deacylization catalyzed by a bacterial effector and host calmodulin

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Loss of MTCH-1 suppresses age-related proteostasis collapse through the inhibition of programmed cell death factors

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Activation of Wnt/β-catenin signaling by Zeb1 in endothelial progenitors induces vascular quiescence entry

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Size-Based Effects of Anthropogenic Ultrafine Particles on Lysosomal TRPML1 Channel and Autophagy in Motoneuron-like Cells

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  DOI: 10.3390/ijms232113041
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9656695/
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Reciprocal effects of mTOR inhibitors on pro-survival proteins dictate therapeutic responses in tuberous sclerosis complex

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  DOI: 10.1016/j.isci.2022.105458
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9663903/
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PGC-1α in the myofibers regulates the balance between myogenic and adipogenic progenitors affecting muscle regeneration

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  DOI: 10.1016/j.isci.2022.105480
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9663886/
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V-ATPase/TORC1-mediated ATFS-1 translation directs mitochondrial UPR activation in C. elegans

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rupress.org/jcb/article/222/1/e202205045/213623/V-ATPase-TORC1-mediated-ATFS-1-translation-directs
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Unbiased proteomic and forward genetic screens reveal that mechanosensitive ion channel MSL10 functions at ER-plasma membrane contact sites in Arabidopsis thaliana

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elifesciences.org/articles/80501
Oct 2022
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Yeast Smy2 and its human homologs GIGYF1 and -2 regulate Cdc48/VCP function during transcription stress

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The autophagy inducer SMER28 attenuates microtubule dynamics mediating neuroprotection

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A Short Promoter Region Containing Conserved Regulatory Motifs Is Required for Steroidogenic Acute Regulatory Protein (Star) Gene Expression in the Mouse Testis

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Septin barriers protect mammalian host cells against Pseudomonas aeruginosa invasion

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Sep 2022
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Identification of CUL4A-DDB1-WDFY1 as an E3 ubiquitin ligase complex involved in initiation of lysophagy

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Micronuclei from misaligned chromosomes that satisfy the spindle assembly checkpoint in cancer cells

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Aug 2022
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The RNA helicase DDX5 cooperates with EHMT2 to sustain alveolar rhabdomyosarcoma growth

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PIDDosome-SCAP crosstalk controls high-fructose-diet-dependent transition from simple steatosis to steatohepatitis

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The transcription factor E2F1 controls the GLP-1 receptor pathway in pancreatic β cells

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Jul 2022
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A non-transcriptional function of Yap regulates the DNA replication program in Xenopus laevis

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  DOI: 10.7554/eLife.75741
  
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Self-assembly of pericentriolar material in interphase cells lacking centrioles

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  DOI: 10.7554/eLife.77892
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9307276/
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Rapid 3D-STORM imaging of diverse molecular targets in tissue

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  DOI: 10.1016/j.crmeth.2022.100253
  
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Small RNAs derived from tRNA fragmentation regulate the functional maturation of neonatal β cells

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A ROS-dependent mechanism promotes CDK2 phosphorylation to drive progression through S phase

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  DOI: 10.1016/j.devcel.2022.06.008
  
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Local synthesis of the phosphatidylinositol-3,4-bisphosphate lipid drives focal adhesion turnover

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  DOI: 10.1016/j.devcel.2022.06.011
  
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Mitotic checkpoint gene expression is tuned by codon usage bias

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  DOI: 10.15252/embj.2021107896
  
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Neurogranin, encoded by the schizophrenia risk gene NRGN, bidirectionally modulates synaptic plasticity via calmodulin-dependent regulation of the neuronal phosphoproteome

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Ubiquitin profiling of lysophagy identifies actin stabilizer CNN2 as a target of VCP/p97 and uncovers a link to HSPB1

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LRH-1/NR5A2 interacts with the glucocorticoid receptor to regulate glucocorticoid resistance

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Identification of the stress granule transcriptome via RNA-editing in single cells and in vivo

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Visualization of the dynamic interaction between nucleosomal histone H3K9 tri-methylation and HP1α chromodomain in living cells

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A function for Ataxia telangiectasia and Rad3-related (ATR) kinase in cytokinetic abscission

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Identification of a neural development gene expression signature in colon cancer stem cells reveals a role for EGR2 in tumorigenesis

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A conditional counterselectable Piga knockout in mouse embryonic stem cells for advanced genome writing applications

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METTL18-mediated histidine methylation of RPL3 modulates translation elongation for proteostasis maintenance

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Counteracting chromatin effects of a splicing-correcting antisense oligonucleotide improves its therapeutic efficacy in spinal muscular atrophy

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ER-lysosome lipid transfer protein VPS13C/PARK23 prevents aberrant mtDNA-dependent STING signaling

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In vitro experiments and kinetic models of Arabidopsis pollen hydration mechanics show that MSL8 is not a simple tension-gated osmoregulator

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Coenzyme A precursors flow from mother to zygote and from microbiome to host

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GMAP is an Atg8a-interacting protein that regulates Golgi turnover in Drosophila

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The epilepsy-associated protein PCDH19 undergoes NMDA receptor-dependent proteolytic cleavage and regulates the expression of immediate-early genes

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Intracellular infection and immune system cues rewire adipocytes to acquire immune function

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Blood-brain barrier permeability is regulated by lipid transport-dependent suppression of caveolae-mediated transcytosis

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Mitochondrial dynamics regulate genome stability via control of caspase-dependent DNA damage

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Lfng and Dll3 cooperate to modulate protein interactions in cis and coordinate oscillatory Notch pathway activation in the segmentation clock

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Augmin-dependent microtubule self-organization drives kinetochore fiber maturation in mammals

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FER regulates endosomal recycling and is a predictor for adjuvant taxane benefit in breast cancer

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Persistent cell migration emerges from a coupling between protrusion dynamics and polarized trafficking

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Pathogen hijacks programmed cell death signaling by arginine ADPR-deacylization of caspases

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Self-incompatibility requires GPI anchor remodeling by the poppy PGAP1 ortholog HLD1

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CRISPR/Cas9 Screens Reveal Epstein-Barr Virus Transformed B-Cell Host Dependency Factors

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Histone deacetylation regulates nucleotide excision repair through an interaction with the XPC protein

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Loss of circadian rhythmicity in bdnf knockout zebrafish larvae

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Cdc48 influence on separase levels is independent of mitosis and suggests translational sensitivity of separase

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EB1- and EB2-dependent anterograde trafficking of TRPM4 regulates focal adhesion turnover and cell invasion

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F-box protein FBXO41 plays vital role in arsenic trioxide-mediated autophagic death of cancer cells

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The anti-diabetic drug metformin regulates voltage-gated sodium channel NaV1.7 via the ubiquitin-ligase NEDD4-2

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Proteomic profiling reveals CDK6 upregulation as a targetable resistance mechanism for lenalidomide in multiple myeloma

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Chromatin topology defines estradiol-primed progesterone receptor and PAX2 binding in endometrial cancer cells

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Protein visualization and manipulation in Drosophila through the use of epitope tags recognized by nanobodies

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An Inducible CRISPR/Cas9 Screen Identifies DTX2 as a Transcriptional Regulator of Human Telomerase

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Feb 2022
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Pigment Epithelium Derived Factor Is Involved in the Late Phase of Osteosarcoma Metastasis by Increasing Extravasation and Cell-Cell Adhesion

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ROPGAP-dependent interaction between brassinosteroid and ROP2-GTPase signaling controls pavement cell shape in Arabidopsis

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SPARCLE, a p53-induced lncRNA, controls apoptosis after genotoxic stress by promoting PARP-1 cleavage

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Steroid hormone receptor and infiltrating immune cell status reveals therapeutic vulnerabilities of ESR1 mutant breast cancer.

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Syntaxin 4 enrichment in β-cells prevents conversion to autoimmune diabetes in non-obese diabetic (NOD) mice

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Purification of functional Plasmodium falciparum tubulin allows for the identification of parasite-specific microtubule inhibitors

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Selective autophagy controls innate immune response through a TAK1/TAB2/SH3PX1 axis

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Acetylation-dependent regulation of BRAF oncogenic function

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Clusterin is involved in mediating the metabolic function of adipose SIRT1

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Endoplasmic reticulum-translocation is essential for APOL1 cellular toxicity

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Skeletal muscle NOX4 is required for adaptive responses that prevent insulin resistance

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Skeletal muscle NOX4 is required for adaptive responses that prevent insulin resistance

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Circular RNA ZNF609/CKAP5 mRNA interaction regulates microtubule dynamics and tumorigenicity

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A novel CARM1-HuR axis involved in muscle differentiation and plasticity misregulated in spinal muscular atrophy

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Mitochondrial complex I inhibitors suppress tumor growth through concomitant acidification of the intra- and extracellular environment

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Regulation of Na/K-ATPase expression by cholesterol: isoform specificity and the molecular mechanism

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Transcription-wide mapping of dihydrouridine reveals that mRNA dihydrouridylation is required for meiotic chromosome segregation

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Interplay between protein acetylation and ubiquitination controls MCL1 protein stability

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A role for SMARCB1 in synovial sarcomagenesis reveals that SS18-SSX induces canonical BAF destruction

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USP28 deletion and small-molecule inhibition destabilizes c-MYC and elicits regression of squamous cell lung carcinoma

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Stress-dependent inhibition of polarized cell growth through unbalancing the GEF/GAP regulation of Cdc42

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Faim knockout leads to gliosis and late-onset neurodegeneration of photoreceptors in the mouse retina

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RNF168 E3 ligase participates in ubiquitin signaling and recruitment of SLX4 during DNA crosslink repair

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A MET-PTPRK kinase-phosphatase rheostat controls ZNRF3 and Wnt signaling

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Metformin alleviates stress-induced cellular senescence of aging human adipose stromal cells and the ensuing adipocyte dysfunction

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The Hsp90 cochaperone TTT promotes cotranslational maturation of PIKKs prior to complex assembly

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Cholecystokinin 1 receptor activation restores normal mTORC1 signaling and is protective to Purkinje cells of SCA mice

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Temporally distinct post-replicative repair mechanisms fill PRIMPOL-dependent ssDNA gaps in human cells

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CHD1 controls H3.3 incorporation in adult brain chromatin to maintain metabolic homeostasis and normal lifespan

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FLRT2 and FLRT3 cooperate in maintaining the tangential migratory streams of cortical interneurons during development

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Preclinical and Clinical Characterization of Fibroblast-derived Neuregulin-1 on Trastuzumab and Pertuzumab Activity in HER2-positive Breast Cancer

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RetroCHMP3 blocks budding of enveloped viruses without blocking cytokinesis

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ERα determines the chemoresistant function of mutant p53 involving the switch between lincRNA-p21 and DDB2 expressions

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Landscape of functional interactions of human processive ribonucleases revealed by high-throughput siRNA screenings

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Reading ADP-ribosylation signaling using chemical biology and interaction proteomics

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piRNA-independent transposon silencing by the Drosophila THO complex

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Splicing modulators elicit global translational repression by condensate-prone proteins translated from introns

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Tribbles pseudokinase NIPI-3 regulates intestinal immunity in Caenorhabditis elegans by controlling SKN-1/Nrf activity

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RSPO2 inhibits BMP signaling to promote self-renewal in acute myeloid leukemia

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ER – lysosome contacts at a pre-axonal region regulate axonal lysosome availability

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A loss-of-function variant in SUV39H2 identified in autism-spectrum disorder causes altered H3K9 trimethylation and dysregulation of protocadherin β-cluster genes in the developing brain

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TDP-43 condensation properties specify its RNA-binding and regulatory repertoire

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FACT is recruited to the +1 nucleosome of transcribed genes and spreads in a Chd1-dependent manner

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Enhancer RNA m6A methylation facilitates transcriptional condensate formation and gene activation

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An autoinhibitory clamp of actin assembly constrains and directs synaptic endocytosis

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Ketogenesis impact on liver metabolism revealed by proteomics of lysine β-hydroxybutyrylation

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SCAF4 and SCAF8, mRNA Anti-Terminator Proteins

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Small Interference RNA Targeting Connexin-43 Improves Motor Function and Limits Astrogliosis After Juvenile Traumatic Brain Injury - Aleksandra Ichkova, Andrew M. Fukuda, Nina Nishiyama, Germaine Paris, Andre Obenaus, Jerome Badaut, 2019

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Aging-associated genes and let-7 microRNAs: a contribution to myogenic program dysregulation in oculopharyngeal muscular dystrophy

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Deficiency of CPEB2-Confined Choline Acetyltransferase Expression in the Dorsal Motor Nucleus of Vagus Causes Hyperactivated Parasympathetic Signaling-Associated Bronchoconstriction

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CBE1 Is a Manchette- and Mitochondria-Associated Protein With a Potential Role in Somatic Cell Proliferation

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Hormonal and Growth Regulation of Epithelial and Stromal Cells From the Normal and Malignant Endometrium by Pigment Epithelium-Derived Factor

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Tonic prime-boost of STING signalling mediates Niemann–Pick disease type C

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Negative Regulator of Ubiquitin-Like Protein 1 modulates the autophagy-lysosomal pathway via p62 to facilitate the extracellular release of tau following proteasome impairment

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TSPAN5 Enriched Microdomains Provide a Platform for Dendritic Spine Maturation through Neuroligin-1 Clustering

1
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Curcumin attenuates proangiogenic and proinflammatory factors in human eutopic endometrial stromal cells through the NF‐κB signaling pathway

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NEIL1 and NEIL2 DNA glycosylases protect neural crest development against mitochondrial oxidative stress

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  mouse monoclonal anti-alpha tubulin
  
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Enhancer Architecture and Essential Core Regulatory Circuitry of Chronic Lymphocytic Leukemia

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Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus

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Wnt5a modulates dendritic spine dynamics through the regulation of Cofilin via small Rho GTPase activity in hippocampal neurons

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Early-Ethanol Exposure Induced Region-Specific Changes in Metabolic Proteins in the Rat Brain: A Proteomics Study

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Suppression of ischemia in arterial occlusive disease by JNK-promoted native collateral artery development

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Blood-Brain Barrier Permeability Is Regulated by Lipid Transport-Dependent Suppression of Caveolae-Mediated Transcytosis

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Biallelic Mutations in TBCD, Encoding the Tubulin Folding Cofactor D, Perturb Microtubule Dynamics and Cause Early-Onset Encephalopathy

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KIS, a Kinase Associated with Microtubule Regulators, Enhances Translation of AMPA Receptors and Stimulates Dendritic Spine Remodeling

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Degradation of CCNK/CDK12 is a druggable vulnerability of colorectal cancer

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Alternative 3′ UTRs play a widespread role in translation-independent mRNA association with the endoplasmic reticulum

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A novel mechanosensitive channel controls osmoregulation, differentiation, and infectivity in Trypanosoma cruzi

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Annexin A1 Tripeptide Mimetic Increases Sirtuin-3 and Augments Mitochondrial Function to Limit Ischemic Kidney Injury

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Acetylation Blocks cGAS Activity and Inhibits Self-DNA-Induced Autoimmunity

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Mitochondrial-derived vesicles compensate for loss of LC3-mediated mitophagy

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The nuclear kinesin KIF18B promotes 53BP1-mediated DNA double-strand break repair

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Age-related neuroinflammation and pathology in the locus coeruleus and hippocampus: beta-adrenergic antagonists exacerbate impairment of learning and memory in aged mice

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Planarian stem cells sense the identity of the missing pharynx to launch its targeted regeneration

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Overexpressing low-density lipoprotein receptor reduces tau-associated neurodegeneration in relation to apoE-linked mechanisms

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RNA sequencing of long-term label-retaining colon cancer stem cells identifies novel regulators of quiescence

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Three-dimensional adaptive optical nanoscopy for thick specimen imaging at sub-50-nm resolution

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Traumatic injury compromises nucleocytoplasmic transport and leads to TDP-43 pathology

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HIV-induced neuroinflammation inhibits oligodendrocyte maturation via glutamate-dependent activation of the PERK arm of the integrated stress response

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Injury-induced Cavl-expressing cells at lesion rostral side play major roles in spinal cord regeneration

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The PP2A-Integrator-CDK9 axis fine-tunes transcription and can be targeted therapeutically in cancer

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Giantin is required for intracellular N-terminal processing of type I procollagen

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Metabolic regulator IAPP (Amylin) is required for BRAF and RAS oncogene-induced senescence

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Regulation of Na/K-ATPase expression by cholesterol: isoform specificity and the molecular mechanism

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  DOI: 10.1152/ajpcell.00083.2020
  
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Aging‐associated genes and let‐7 microRNAs: a contribution to myogenic program dysregulation in oculopharyngeal muscular dystrophy

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  DOI: 10.1096/fj.201801577RR
  
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Organizational Principles of the NuMA-Dynein Interaction Interface and Implications for Mitotic Spindle Functions

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  DOI: 10.1016/j.str.2020.04.017
  
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Mesenchymal Niche-Derived Neuregulin-1 Drives Intestinal Stem Cell Proliferation and Regeneration of Damaged Epithelium

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  DOI: 10.1016/j.stem.2020.06.021
  
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TopBP1 assembles nuclear condensates to switch on ATR signaling

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  DOI: 10.1016/j.molcel.2020.12.049
  
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Proline Hydroxylation Primes Protein Kinases for Autophosphorylation and Activation

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  DOI: 10.1016/j.molcel.2020.06.021
  
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Tandem Deubiquitination and Acetylation of SPRTN Promotes DNA-Protein Crosslink Repair and Protects against Aging

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  DOI: 10.1016/j.molcel.2020.06.027
  
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Determinants of Endoplasmic Reticulum-to-Lipid Droplet Protein Targeting

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  DOI: 10.1016/j.devcel.2020.07.001
  
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A Mitochondrial Stress-Specific Form of HSF1 Protects against Age-Related Proteostasis Collapse

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  DOI: 10.1016/j.devcel.2020.06.038
  
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Axon-enriched lincRNA ALAE is required for axon elongation via regulation of local mRNA translation

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  DOI: 10.1016/j.celrep.2021.109053
  
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Ligand Binding to the Collagen VI Receptor Triggers a Talin-to-RhoA Switch that Regulates Receptor Endocytosis

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Loss of Hem1 disrupts macrophage function and impacts migration, phagocytosis, and integrin-mediated adhesion

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  DOI: 10.1016/j.cub.2021.02.043
  
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cell.com/current-biology/fulltext/S0960-9822(21)00287-6
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CD276 expression enables squamous cell carcinoma stem cells to evade immune surveillance

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  DOI: 10.1016/j.stem.2021.04.011
  
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The Mechanosensitive Ion Channel MSL10 Potentiates Responses to Cell Swelling in Arabidopsis Seedlings

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Loss of KDM4B exacerbates bone-fat imbalance and mesenchymal stromal cell exhaustion in skeletal aging

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The dystonia gene THAP1 controls DNA double-strand break repair choice

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Simultaneous binding of Guidance Cues NET1 and RGM blocks extracellular NEO1 signaling

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Palmitoylated acyl protein thioesterase APT2 deforms membranes to extract substrate acyl chains

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  DOI: 10.1038/s41589-021-00753-2
  
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nature.com/articles/s41589-021-00753-2
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BPS Publications

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  DOI: 10.1111/bph.15350
  
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Structure of a GRK5-Calmodulin Complex Reveals Molecular Mechanism of GRK Activation and Substrate Targeting

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sciencedirect.com/science/article/pii/S1097276520308261

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