531 Matching Annotations
  1. Jul 2021
  2. f1000research.com f1000research.com
    F1000Research Article: PEGS: An efficient tool for gene set enrichment within defined sets of genomic intervals.
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    f1000research.com/articles/10-570
  3. www.sciencedirect.com www.sciencedirect.com
    Targeted protein degradation reveals a direct role of SPT6 in RNAPII elongation and termination
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    sciencedirect.com/science/article/pii/S1097276521004962
  4. Jun 2021
  5. www.sciencedirect.com www.sciencedirect.com
    Pharmacologic modulation of RNA splicing enhances anti-tumor immunity
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    sciencedirect.com/science/article/pii/S0092867421006905
  6. www.sciencedirect.com www.sciencedirect.com
    H3K27 demethylases are dispensable for activation of Polycomb-regulated injury response genes in peripheral nerve.
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    sciencedirect.com/science/article/pii/S0021925821006505
  7. www.nature.com www.nature.com
    Pericentromeric Satellite III transcripts induce etoposide resistance
    1
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    nature.com/articles/s41419-021-03810-9
  8. May 2021
  9. link.springer.com link.springer.com
    Altered oligodendroglia and astroglia in chronic traumatic encephalopathy
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    link.springer.com/article/10.1007/s00401-021-02322-2
  10. www.sciencedirect.com www.sciencedirect.com
    Rapid and inexpensive preparation of genome-wide nucleosome footprints from model and non-model organisms
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    sciencedirect.com/science/article/pii/S2666166721001933
  11. clincancerres.aacrjournals.org clincancerres.aacrjournals.org
    HAND1 and BARX1 act as transcriptional and anatomic determinants of malignancy in gastrointestinal stromal tumor
    1
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    clincancerres.aacrjournals.org/content/27/6/1706
  12. www.sciencedirect.com www.sciencedirect.com
    Sequential CRISPR gene editing in human iPSCs charts the clonal evolution of myeloid leukemia and identifies early disease targets
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    sciencedirect.com/science/article/pii/S1934590921000114
  13. www.sciencedirect.com www.sciencedirect.com
    Non-canonical Targets of HIF1a Impair Oligodendrocyte Progenitor Cell Function
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    sciencedirect.com/science/article/pii/S193459092030494X
  14. www.sciencedirect.com www.sciencedirect.com
    An intrinsically disordered region-mediated confinement state contributes to the dynamics and function of transcription factors
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    sciencedirect.com/science/article/pii/S1097276521000137
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    Repetitive Elements Trigger RIG-I-like Receptor Signaling that Regulates the Emergence of Hematopoietic Stem and Progenitor Cells
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    sciencedirect.com/science/article/pii/S1074761320304489
  16. www.sciencedirect.com www.sciencedirect.com
    A Prion-like Domain in Transcription Factor EBF1 Promotes Phase Separation and Enables B Cell Programming of Progenitor Chromatin
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    sciencedirect.com/science/article/pii/S1074761320304507
  17. www.nature.com www.nature.com
    Transcription factor chromatin profiling genome-wide using uliCUT&RUN in single cells and individual blastocysts
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    nature.com/articles/s41596-021-00516-2
  18. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Defects in translation-dependent quality control pathways lead to convergent molecular and neurodevelopmental pathology
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    ncbi.nlm.nih.gov/pmc/articles/PMC8075583/
  19. Apr 2021
  20. www.sciencedirect.com www.sciencedirect.com
    Recording of DNA-binding events reveals the importance of a repurposed Candida albicans regulatory network for gut commensalism
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    sciencedirect.com/science/article/pii/S1931312821001475
  21. www.sciencedirect.com www.sciencedirect.com
    Acetylation of Cytidine Residues Boosts HIV-1 Gene Expression by Increasing Viral RNA Stability
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    sciencedirect.com/science/article/pii/S1931312820302936
  22. www.sciencedirect.com www.sciencedirect.com
    5-hydroxymethylcytosine is dynamically regulated during forebrain organoid development and aberrantly altered in Alzheimer’s disease
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    sciencedirect.com/science/article/pii/S2211124721003582
  23. www.sciencedirect.com www.sciencedirect.com
    Efficient RNA polymerase II pause release requires U2 snRNP function
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    sciencedirect.com/science/article/pii/S109727652100126X
  24. www.cell.com www.cell.com
    IL6/STAT3 Signaling Hijacks Estrogen Receptor α Enhancers to Drive Breast Cancer Metastasis
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    cell.com/cancer-cell/fulltext/S1535-6108(20)30311-1
  25. www.sciencedirect.com www.sciencedirect.com
    The SMC5/6 complex compacts and silences unintegrated HIV-1 DNA and is antagonized by Vpr
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    sciencedirect.com/science/article/pii/S1931312821001013
  26. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evidence for additive and synergistic action of mammalian enhancers during cell fate determination
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    ncbi.nlm.nih.gov/pmc/articles/PMC8004103/
  27. Mar 2021
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Human ORC/MCM density is low in active genes and correlates with replication time but does not delimit initiation zones
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    ncbi.nlm.nih.gov/pmc/articles/PMC7993996/
  29. faseb.onlinelibrary.wiley.com faseb.onlinelibrary.wiley.com
    Genomic exploration of the targets of FOXL2 and ESR2 unveils their implication in cell migration, invasion, and adhesion
    1
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    faseb.onlinelibrary.wiley.com/doi/10.1096/fj.202002444R
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Basis of specificity for a conserved and promiscuous chromatin remodeling protein
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC7968928/
  31. elifesciences.org elifesciences.org
    HAT cofactor TRRAP modulates microtubule dynamics via SP1 signaling to prevent neurodegeneration
    1
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    elifesciences.org/articles/61531
  32. onlinelibrary.wiley.com onlinelibrary.wiley.com
    A Ketogenic Diet Differentially Affects Neuron And Astrocyte Transcription
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    onlinelibrary.wiley.com/doi/10.1111/jnc.15313
  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Convergent organization of aberrant MYB complex controls oncogenic gene expression in acute myeloid leukemia
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    ncbi.nlm.nih.gov/pmc/articles/PMC7886351/
  34. Feb 2021
  35. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Human adipose‐derived stromal/stem cells are distinct from dermal fibroblasts as evaluated by biological characterization and RNA sequencing
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    onlinelibrary.wiley.com/doi/10.1002/cbf.3610
  36. www.sciencedirect.com www.sciencedirect.com
    Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma
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    sciencedirect.com/science/article/pii/S0092867420316135
  37. www.cell.com www.cell.com
    Interferon-λ Mediates Non-redundant Front-Line Antiviral Protection against Influenza Virus Infection without Compromising Host Fitness
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    cell.com/immunity/abstract/S1074-7613(17)30190-5
  38. elifesciences.org elifesciences.org
    NuRD subunit CHD4 regulates super-enhancer accessibility in rhabdomyosarcoma and represents a general tumor dependency
    1
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    elifesciences.org/articles/54993
  39. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Morpholinos do not elicit an innate immune response during early Xenopus embryogenesis
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    ncbi.nlm.nih.gov/pmc/articles/PMC6599594/
  40. www.sciencedirect.com www.sciencedirect.com
    The corepressors GPS2 and SMRT control enhancer and silencer remodeling via eRNA transcription during inflammatory activation of macrophages
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    sciencedirect.com/science/article/pii/S1097276520309618
  41. www.sciencedirect.com www.sciencedirect.com
    C/EBPα and GATA-2 Mutations Induce Bilineage Acute Erythroid Leukemia through Transformation of a Neomorphic Neutrophil-Erythroid Progenitor
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    sciencedirect.com/science/article/pii/S1535610820301628
  42. www.sciencedirect.com www.sciencedirect.com
    The Alazami Syndrome-Associated Protein LARP7 Guides U6 Small Nuclear RNA Modification and Contributes to Splicing Robustness
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    sciencedirect.com/science/article/pii/S1097276520300010
  43. www.cell.com www.cell.com
    Inverse Data-Driven Modeling and Multiomics Analysis Reveals Phgdh as a Metabolic Checkpoint of Macrophage Polarization and Proliferation
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    cell.com/cell-reports/abstract/S2211-1247(20)30020-6
  44. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The histone demethylase KDM5 is required for synaptic structure and function at the Drosophila neuromuscular junction
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC7945993/
  45. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Dimerisation of the PICTS complex via LC8/Cut-up drives co-transcriptional transposon silencing in Drosophila
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC7861614/
  46. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The origins and consequences of UPF1 variants in pancreatic adenosquamous carcinoma
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    ncbi.nlm.nih.gov/pmc/articles/PMC7846273/
  47. Jan 2021
  48. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Re-expression of SMARCA4/BRG1 in small cell carcinoma of ovary, hypercalcemic type (SCCOHT) promotes an epithelial-like gene signature through an AP-1-dependent mechanism
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC7813545/
  49. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Manipulation of the human tRNA pool reveals distinct tRNA sets that act in cellular proliferation or cell cycle arrest
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC7781600/
  50. www.sciencedirect.com www.sciencedirect.com
    The Essential Function of SETDB1 in Homologous Chromosome Pairing and Synapsis during Meiosis
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    sciencedirect.com/science/article/pii/S2211124720315643
  51. www.sciencedirect.com www.sciencedirect.com
    Charting Extracellular Transcriptomes in The Human Biofluid RNA Atlas
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    sciencedirect.com/science/article/pii/S2211124720315412
  52. Dec 2020
  53. academic.oup.com academic.oup.com
    Chromosomal genome of Triplophysa bleekeri provides insights into its evolution and environmental adaptation
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    academic.oup.com/gigascience/article/9/11/giaa132/5999722
  54. www.sciencedirect.com www.sciencedirect.com
    Prolonged Exposure to Microgravity Reduces Cardiac Contractility and Initiates Remodeling in Drosophila
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    sciencedirect.com/science/article/pii/S2211124720314340
  55. Nov 2020
  56. elifesciences.org elifesciences.org
    GTPBP1 resolves paused ribosomes to maintain neuronal homeostasis
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    elifesciences.org/articles/62731
  57. www.sciencedirect.com www.sciencedirect.com
    Metabolic Reprogramming Induces Germinal Center B Cell Differentiation through Bcl6 Locus Remodeling
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    sciencedirect.com/science/article/pii/S221112472031322X
  58. Oct 2020
  59. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Cord blood DNA methylome in newborns later diagnosed with autism spectrum disorder reflects early dysregulation of neurodevelopmental and X-linked genes
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    pubmed.ncbi.nlm.nih.gov/33054850/
  60. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Host-induced spermidine production in motile Pseudomonas aeruginosa triggers phagocytic uptake
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    ncbi.nlm.nih.gov/pmc/articles/PMC7538158/
  61. Sep 2020
  62. www.sciencedirect.com www.sciencedirect.com
    Symmetric Arginine Dimethylation Is Selectively Required for mRNA Splicing and the Initiation of Type I and Type III Interferon Signaling
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    sciencedirect.com/science/article/pii/S2211124720300796
  63. www.cell.com www.cell.com
    Inverse Data-Driven Modeling and Multiomics Analysis Reveals Phgdh as a Metabolic Checkpoint of Macrophage Polarization and Proliferation
    1
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    cell.com/cell-reports/abstract/S2211-1247(20)30020-6
  64. elifesciences.org elifesciences.org
    Aneuploidy as a cause of impaired chromatin silencing and mating-type specification in budding yeast
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    elifesciences.org/articles/27991
  65. elifesciences.org elifesciences.org
    A human ESC-based screen identifies a role for the translated lncRNA LINC00261 in pancreatic endocrine differentiation
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    elifesciences.org/articles/58659
  66. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    H3K4me1 Distribution Predicts Transcription State and Poising at Promoters
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    ncbi.nlm.nih.gov/pmc/articles/PMC7214686/
  67. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Binding of the Treslin-MTBP Complex to Specific Regions of the Human Genome Promotes the Initiation of DNA Replication
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    pubmed.ncbi.nlm.nih.gov/32966791/
  68. academic.oup.com academic.oup.com
    SRPRISM (Single Read Paired Read Indel Substitution Minimizer): an efficient aligner for assemblies with explicit guarantees
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    academic.oup.com/gigascience/article/9/4/giaa023/5823174
  69. www.sciencedirect.com www.sciencedirect.com
    Structure-Mediated RNA Decay by UPF1 and G3BP1
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    sciencedirect.com/science/article/pii/S1097276520300423
  70. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Analysis of zebrafish periderm enhancers facilitates identification of a regulatory variant near human KRT8/18
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    ncbi.nlm.nih.gov/pmc/articles/PMC7039683/
  71. elifesciences.org elifesciences.org
    Molecular pathway analysis towards understanding tissue vulnerability in spinocerebellar ataxia type 1
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    elifesciences.org/articles/39981
  72. www.sciencedirect.com www.sciencedirect.com
    Non-Canonical Caspase Activity Antagonizes p38 MAPK Stress-Priming Function to Support Development
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    sciencedirect.com/science/article/pii/S1534580720302240
  73. www.sciencedirect.com www.sciencedirect.com
    Interleukin-33 Signaling Controls the Development of Iron-Recycling Macrophages
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    sciencedirect.com/science/article/pii/S1074761320301199
  74. www.sciencedirect.com www.sciencedirect.com
    The Alazami Syndrome-Associated Protein LARP7 Guides U6 Small Nuclear RNA Modification and Contributes to Splicing Robustness
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    sciencedirect.com/science/article/pii/S1097276520300010
  75. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Repressive H3K9me2 protects lifespan against the transgenerational burden of COMPASS activity in C. elegans
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    ncbi.nlm.nih.gov/pmc/articles/PMC7299346/
  76. www.sciencedirect.com www.sciencedirect.com
    Super-Enhancer Redistribution as a Mechanism of Broad Gene Dysregulation in Repeatedly Drug-Treated Cancer Cells
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    sciencedirect.com/science/article/pii/S2211124720304320
  77. www.sciencedirect.com www.sciencedirect.com
    Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding
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    sciencedirect.com/science/article/pii/S1097276520301507
  78. www.sciencedirect.com www.sciencedirect.com
    Functional and Genomic Variation between Human-Derived Isolates of Lachnospiraceae Reveals Inter- and Intra-Species Diversity
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    sciencedirect.com/science/article/pii/S1931312820302870
  79. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Aire-dependent genes undergo Clp1-mediated 3’UTR shortening associated with higher transcript stability in the thymus
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    ncbi.nlm.nih.gov/pmc/articles/PMC7205469/
  80. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Chromosome‐level genome assembly of a cyprinid fish Onychostoma macrolepis by integration of Nanopore Sequencing, Bionano and Hi‐C technology
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    onlinelibrary.wiley.com/doi/10.1111/1755-0998.13190
  81. academic.oup.com academic.oup.com
    Transcriptome analysis of the response of Burmese python to digestion
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    academic.oup.com/gigascience/article/6/8/gix057/3958772
  82. elifesciences.org elifesciences.org
    Transposase-assisted tagmentation of RNA/DNA hybrid duplexes
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    elifesciences.org/articles/54919
  83. www.sciencedirect.com www.sciencedirect.com
    Sialyl-LewisX Glycoantigen Is Enriched on Cells with Persistent HIV Transcription during Therapy
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    sciencedirect.com/science/article/pii/S2211124720309761
  84. academic.oup.com academic.oup.com
    Genome sequence of the agarwood tree Aquilaria sinensis (Lour.) Spreng: the first chromosome-level draft genome in the Thymelaeceae family
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    academic.oup.com/gigascience/article/9/3/giaa013/5771296
  85. cancerres.aacrjournals.org cancerres.aacrjournals.org
    Suppression of ABCE1-mediated mRNA translation limits N-MYC-driven cancer progression
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    cancerres.aacrjournals.org/content/80/17/3706
  86. academic.oup.com academic.oup.com
    Chromosome-level genome assembly of Aldrichina grahami , a forensically important blowfly
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    academic.oup.com/gigascience/article/9/3/giaa020/5810243
  87. elifesciences.org elifesciences.org
    Amplification of a broad transcriptional program by a common factor triggers the meiotic cell cycle in mice
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    elifesciences.org/articles/43738
  88. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The testis protein ZNF165 is a SMAD3 cofactor that coordinates oncogenic TGFβ signaling in triple-negative breast cancer
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC7302877/
  89. www.cell.com www.cell.com
    Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains
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    cell.com/molecular-cell/abstract/S1097-2765(18)30948-1
  90. elifesciences.org elifesciences.org
    Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury
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    elifesciences.org/articles/43882
  91. academic.oup.com academic.oup.com
    De novo PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads
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    academic.oup.com/gigascience/article/6/10/gix085/4096262
  92. www.sciencedirect.com www.sciencedirect.com
    In Vivo Repair of a Protein Underlying a Neurological Disorder by Programmable RNA Editing
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    sciencedirect.com/science/article/pii/S2211124720308597
  93. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Phenotypic plasticity as a mechanism of cave colonization and adaptation
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    ncbi.nlm.nih.gov/pmc/articles/PMC7173965/
  94. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    PHF19 mediated regulation of proliferation and invasiveness in prostate cancer cells
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    ncbi.nlm.nih.gov/pmc/articles/PMC7064337/
  95. www.sciencedirect.com www.sciencedirect.com
    Genome-Scale CRISPR Screening in Human Intestinal Organoids Identifies Drivers of TGF-β Resistance
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    sciencedirect.com/science/article/pii/S1934590920300606
  96. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Suppressing proteasome mediated processing of topoisomerase II DNA-protein complexes preserves genome integrity
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    ncbi.nlm.nih.gov/pmc/articles/PMC7089766/
  97. www.sciencedirect.com www.sciencedirect.com
    Cell Type-Specific Intralocus Interactions Reveal Oligodendrocyte Mechanisms in MS
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    sciencedirect.com/science/article/pii/S0092867420302646
  98. elifesciences.org elifesciences.org
    The histone modification reader ZCWPW1 links histone methylation to PRDM9-induced double-strand break repair
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    elifesciences.org/articles/53459
  99. elifesciences.org elifesciences.org
    HNF1A is a novel oncogene that regulates human pancreatic cancer stem cell properties
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