505 Matching Annotations
  1. Apr 2024
  2. link.springer.com link.springer.com
    EP300/CREBBP acetyltransferase inhibition limits steroid receptor and FOXA1 signaling in prostate cancer cells
    1
    1. scibot 10 Apr 2024
      RRID:SCR_005476

      DOI: 10.1007/s00018-024-05209-z

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    link.springer.com/article/10.1007/s00018-024-05209-z
  3. www.sciencedirect.com www.sciencedirect.com
    Telomere dysfunction alters intestinal stem cell dynamics to promote cancer
    1
    1. scibot 04 Apr 2024
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      DOI: 10.1016/j.devcel.2024.03.020

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    sciencedirect.com/science/article/pii/S1534580724001886
  4. Feb 2024
  5. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The EstroGene database reveals diverse temporal, context-dependent, and bidirectional estrogen receptor regulomes in breast cancer
    1
    1. scibot 16 Feb 2024
      RRID:SCR_005476

      DOI: 10.1158/0008-5472.CAN-23-0539

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    ncbi.nlm.nih.gov/pmc/articles/PMC10527051/
  6. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome-wide p63-target gene analyses reveal TAp63/NRF2-dependent oxidative stress responses
    1
    1. scibot 03 Feb 2024
      RRID:SCR_005476

      DOI: 10.1158/2767-9764.CRC-23-0358

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    ncbi.nlm.nih.gov/pmc/articles/PMC10832605/
  7. Jan 2024
  8. faseb.onlinelibrary.wiley.com faseb.onlinelibrary.wiley.com
    Genomic exploration of the targets of FOXL2 and ESR2 unveils their implication in cell migration, invasion, and adhesion
    1
    1. scibot 20 Jan 2024
      RRID:SCR_005476

      DOI: 10.1096/fj.202002444R

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    faseb.onlinelibrary.wiley.com/doi/10.1096/fj.202002444R
  9. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Glucose Deprivation Promotes Pseudohypoxia and Dedifferentiation in Lung Adenocarcinoma
    1
    1. scibot 20 Jan 2024
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      DOI: 10.1158/0008-5472.CAN-23-1148

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    ncbi.nlm.nih.gov/pmc/articles/PMC10790128/
  10. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    PRDM3/16 Regulate Chromatin Accessibility Required for NKX2-1 Mediated Alveolar Epithelial Differentiation and Function
    1
    1. scibot 20 Jan 2024
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      DOI: 10.1101/2023.12.20.570481

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    ncbi.nlm.nih.gov/pmc/articles/PMC10769259/
  11. Dec 2023
  12. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multiple independent losses of the biosynthetic pathway for two tropane alkaloids in the Solanaceae family
    1
    1. scibot 22 Dec 2023
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      DOI: 10.1038/s41467-023-44246-3

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    ncbi.nlm.nih.gov/pmc/articles/PMC10730914/
  13. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Blimp-1 and c-Maf regulate  Il10 and negatively regulate common and unique proinflammatory gene networks in IL-12 plus IL-27-driven T helper-1 cells
    1
    1. scibot 13 Dec 2023
      RRID:SCR_005476

      DOI: 10.12688/wellcomeopenres.19680.2

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    ncbi.nlm.nih.gov/pmc/articles/PMC10709690/
  14. Nov 2023
  15. www.sciencedirect.com www.sciencedirect.com
    Debugging and consolidating multiple synthetic chromosomes reveals combinatorial genetic interactions
    1
    1. scibot 28 Nov 2023
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      DOI: 10.1016/j.cell.2023.09.025

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    sciencedirect.com/science/article/pii/S0092867423010796
  16. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    MicroRNA-218 instructs proper assembly of hippocampal networks
    1
    1. scibot 15 Nov 2023
      RRID:SCR_005476

      DOI: 10.7554/eLife.82729

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    ncbi.nlm.nih.gov/pmc/articles/PMC10637775/
  17. wellcomeopenresearch.org wellcomeopenresearch.org
    Blimp-1 and c-Maf regulate Il10 and negatively regulate common and unique proinflammatory gene networks in IL-12 plus IL-27-driven T helper-1 cells
    1
    1. scibot 10 Nov 2023
      RRID:SCR_005476

      DOI: 10.12688/wellcomeopenres.19680.1

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    wellcomeopenresearch.org/articles/8-403/v1
  18. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Divergence of TORC1-mediated stress response leads to novel acquired stress resistance in a pathogenic yeast
    1
    1. scibot 09 Nov 2023
      RRID:SCR_005476

      DOI: 10.1371/journal.ppat.1011748

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    ncbi.nlm.nih.gov/pmc/articles/PMC10621968/
  19. Oct 2023
  20. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Super-enhancer hijacking drives ectopic expression of hedgehog pathway ligands in meningiomas
    1
    1. scibot 12 Oct 2023
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      DOI: 10.1038/s41467-023-41926-y

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    ncbi.nlm.nih.gov/pmc/articles/PMC10560290/
  21. Sep 2023
  22. www.sciencedirect.com www.sciencedirect.com
    Characterization of the male-specific region containing the candidate sex-determining gene in Amur catfish (Silurus asotus) using third-generation- and pool-sequencing data
    1
    1. scibot 27 Sep 2023
      RRID:SCR_005476

      DOI: 10.1016/j.ijbiomac.2023.125908

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    sciencedirect.com/science/article/pii/S0141813023028039
  23. Aug 2023
  24. www.sciencedirect.com www.sciencedirect.com
    The SMC5/6 complex compacts and silences unintegrated HIV-1 DNA and is antagonized by Vpr
    1
    1. scibot 23 Aug 2023
      RRID:SCR_005476

      DOI: 10.1016/j.chom.2021.03.001

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    sciencedirect.com/science/article/pii/S1931312821001013
  25. Jul 2023
  26. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identification of sex chromosomes and primary sex ratio in the small hive beetle, a worldwide parasite of honey bees
    1
    1. scibot 27 Jul 2023
      RRID:SCR_005476

      DOI: 10.1093/gigascience/giad056

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    ncbi.nlm.nih.gov/pmc/articles/PMC10367126/
  27. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Prenatal Δ9-tetrahydrocannabinol exposure in males leads to motivational disturbances related to striatal epigenetic dysregulation
    1
    1. scibot 18 Jul 2023
      RRID:SCR_005476

      DOI: 10.1016/j.biopsych.2021.09.017

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    ncbi.nlm.nih.gov/pmc/articles/PMC8957623/
  28. Jun 2023
  29. www.biorxiv.org www.biorxiv.org
    Divergence of TORC1-mediated Stress Response Leads to Novel Acquired Stress Resistance in a Pathogenic Yeast
    1
    1. scibot 26 Jun 2023
      RRID:SCR_005476

      DOI: 10.1101/2023.06.20.545716

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    biorxiv.org/content/10.1101/2023.06.20.545716v1
  30. www.sciencedirect.com www.sciencedirect.com
    5-Azacytidine- and retinoic-acid-induced reprogramming of DCCs into dormancy suppresses metastasis via restored TGF-β-SMAD4 signaling
    1
    1. scibot 02 Jun 2023
      RRID:SCR_005476

      DOI: 10.1016/j.celrep.2023.112560

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    sciencedirect.com/science/article/pii/S2211124723005715
  31. May 2023
  32. www.sciencedirect.com www.sciencedirect.com
    Mbnl2 loss alters novel context processing and impairs object recognition memory
    1
    1. scibot 14 May 2023
      RRID:SCR_005476

      DOI: 10.1016/j.isci.2023.106732

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    sciencedirect.com/science/article/pii/S258900422300809X
  33. www.sciencedirect.com www.sciencedirect.com
    Functional interplay between Mediator and RSC chromatin remodeling complex controls nucleosome-depleted region maintenance at promoters
    1
    1. scibot 03 May 2023
      RRID:SCR_005476

      DOI: 10.1016/j.celrep.2023.112465

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    sciencedirect.com/science/article/pii/S221112472300476X
  34. Apr 2023
  35. www.sciencedirect.com www.sciencedirect.com
    Insights into identifying resistance genes for cold and disease stresses through chromosome-level reference genome analyses of Poncirus polyandra
    1
    1. scibot 28 Apr 2023
      RRID:SCR_005476

      DOI: 10.1016/j.ygeno.2023.110617

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    sciencedirect.com/science/article/pii/S0888754323000617
  36. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    SWI/SNF Blockade Disrupts PU.1-Directed Enhancer Programs in Normal Hematopoietic Cells and Acute Myeloid Leukemia
    1
    1. scibot 12 Apr 2023
      RRID:SCR_005476

      DOI: 10.1158/0008-5472.CAN-22-2129

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    ncbi.nlm.nih.gov/pmc/articles/PMC10071820/
  37. Mar 2023
  38. www.sciencedirect.com www.sciencedirect.com
    A transcriptionally distinct subset of influenza-specific effector memory B cells predicts long-lived antibody responses to vaccination in humans
    1
    1. scibot 28 Mar 2023
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      DOI: 10.1016/j.immuni.2023.03.001

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    sciencedirect.com/science/article/pii/S1074761323000948
  39. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    ViReMa: a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids
    1
    1. scibot 22 Mar 2023
      RRID:SCR_005476

      DOI: 10.1093/gigascience/giad009

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    ncbi.nlm.nih.gov/pmc/articles/PMC10025937/
  40. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A reference genome for the critically endangered woylie, Bettongia penicillata ogilbyi
    1
    1. scibot 02 Mar 2023
      RRID:SCR_005476

      DOI: 10.46471/gigabyte.35

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650285/
  41. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The first Antechinus reference genome provides a resource for investigating the genetic basis of semelparity and age-related neuropathologies
    1
    1. scibot 02 Mar 2023
      RRID:SCR_005476

      DOI: 10.46471/gigabyte.7

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    ncbi.nlm.nih.gov/pmc/articles/PMC9631953/
  42. Feb 2023
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Loss of PBRM1 alters promoter histone modifications and activates ALDH1A1 to drive renal cell carcinoma
    1
    1. scibot 09 Feb 2023
      RRID:SCR_005476

      DOI: 10.1158/1541-7786.MCR-21-1039

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    ncbi.nlm.nih.gov/pmc/articles/PMC9357026/
  44. Jan 2023
  45. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptomic and proteomic analyses provide insights into host adaptation of a bamboo-feeding aphid
    1
    1. scibot 28 Jan 2023
      RRID:SCR_005476

      DOI: 10.3389/fpls.2022.1098751

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    ncbi.nlm.nih.gov/pmc/articles/PMC9874943/
  46. Dec 2022
  47. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Prevalent and dynamic binding of the cell cycle checkpoint kinase Rad53 to gene promoters
    1
    1. scibot 30 Dec 2022
      RRID:SCR_005476

      DOI: 10.7554/eLife.84320

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    ncbi.nlm.nih.gov/pmc/articles/PMC9797190/
  48. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Distinct Tumor Necrosis Factor Alpha Receptors Dictate Stem Cell Fitness Versus Lineage Output in Dnmt3a-Mutant Clonal Hematopoiesis
    1
    1. scibot 16 Dec 2022
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      DOI: 10.1158/2159-8290.CD-22-0086

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    ncbi.nlm.nih.gov/pmc/articles/PMC9716249/
  49. www.sciencedirect.com www.sciencedirect.com
    Chromosomal-level genome and multi-omics dataset provides new insights into leaf pigmentation in Acer palmatum
    1
    1. scibot 06 Dec 2022
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      DOI: 10.1016/j.ijbiomac.2022.11.303

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    sciencedirect.com/science/article/pii/S0141813022028689
  50. aacrjournals.org aacrjournals.org
    BAF complex maintains glioma stem cells in pediatric H3K27M-glioma
    1
    1. scibot 03 Dec 2022
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      DOI: 10.1158/2159-8290.CD-21-1491

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    aacrjournals.org/cancerdiscovery/article/12/12/2880/711164/BAF-Complex-Maintains-Glioma-Stem-Cells-in
  51. Nov 2022
  52. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    CIRCprimerXL: Convenient and High-Throughput PCR Primer Design for Circular RNA Quantification
    1
    1. scibot 03 Nov 2022
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      DOI: 10.3389/fbinf.2022.834655

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    ncbi.nlm.nih.gov/pmc/articles/PMC9580850/
  53. Oct 2022
  54. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    STAG2 expression is associated with adverse survival outcomes and regulates cell phenotype in muscle-invasive bladder cancer
    1
    1. scibot 26 Oct 2022
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      DOI: 10.1158/2767-9764.crc-22-0155

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    ncbi.nlm.nih.gov/pmc/articles/PMC9583756/
  55. Sep 2022
  56. f1000research.com f1000research.com
    Circadian signatures of anterior hypothalamus in time-restricted feeding
    1
    1. scibot 30 Sep 2022
      RRID:SCR_005476

      DOI: 10.12688/f1000research.125368.1

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    f1000research.com/articles/11-1087
  57. Aug 2022
  58. www.sciencedirect.com www.sciencedirect.com
    Distinct silencer states generate epigenetic states of heterochromatin
    1
    1. scibot 30 Aug 2022
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      DOI: 10.1016/j.molcel.2022.08.002

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    sciencedirect.com/science/article/pii/S1097276522007559
  59. www.sciencedirect.com www.sciencedirect.com
    Dual ontogeny of disease-associated microglia and disease inflammatory macrophages in aging and neurodegeneration
    1
    1. scibot 10 Aug 2022
      RRID:SCR_005476

      DOI: 10.1016/j.immuni.2022.07.004

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    sciencedirect.com/science/article/pii/S1074761322003375
  60. Jul 2022
  61. bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com
    BPS Publications
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    1. scibot 27 Jul 2022
      RRID:SCR_005476

      DOI: 10.1111/bph.15910

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  62. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Anastrozole regulates fatty acid synthase in breast cancer
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  63. Jun 2022
  64. 52.53.155.43 52.53.155.43
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  65. 52.53.155.43 52.53.155.43
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  66. www.sciencedirect.com www.sciencedirect.com
    EED is required for mouse primordial germ cell differentiation in the embryonic gonad
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    Global-run on sequencing identifies Gm11967 as an Akt-dependent long noncoding RNA involved in insulin sensitivity
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  68. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Oct4 differentially regulates chromatin opening and enhancer transcription in pluripotent stem cells
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  69. May 2022
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    DNA-PK promotes DNA end resection at DNA double strand breaks in G0 cells
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  71. Apr 2022
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    An optimized 4C-seq protocol based on cistrome and epigenome data in the mouse RAW264.7 macrophage cell line
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    The gut environment regulates bacterial gene expression which modulates susceptibility to bacteriophage infection
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    Ribosome profiling of porcine reproductive and respiratory syndrome virus reveals novel features of viral gene expression
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  75. Mar 2022
  76. aacrjournals.org aacrjournals.org
    EP300 Selectively Controls the Enhancer Landscape of MYCN-Amplified Neuroblastoma
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  77. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    High-quality assembly of the reference genome for scarlet sage, Salvia splendens, an economically important ornamental plant
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    Maelstrom functions in the production of Siwi-piRISC capable of regulating transposons in Bombyx germ cells
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  79. Feb 2022
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    Genetic Liability for Internalizing Versus Externalizing Behavior Manifests in the Developing and Adult Hippocampus: Insight From a Meta-analysis of Transcriptional Profiling Studies in a Selectively Bred Rat Model
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  81. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Histone H1 prevents non-CG methylation-mediated small RNA biogenesis in Arabidopsis heterochromatin
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  82. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Maternal diet-induced obesity during pregnancy alters lipid supply to mouse E18.5 fetuses and changes the cardiac tissue lipidome in a sex-dependent manner
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  83. Jan 2022
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    Modeling uniquely human gene regulatory function via targeted humanization of the mouse genome
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      DOI: 10.1038/s41467-021-27899-w

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  85. Dec 2021
  86. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    PEGS: An efficient tool for gene set enrichment within defined sets of genomic intervals
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      DOI: 10.12688/f1000research.53926.2

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  87. academic.oup.com academic.oup.com
    Highly accurate whole-genome imputation of SARS-CoV-2 from partial or low-quality sequences
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      DOI: 10.1093/gigascience/giab078

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    Pre-existing chromatin accessibility and gene expression differences among naive CD4+ T cells influence effector potential
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  89. Nov 2021
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    De novo screening of disease-resistant genes from the chromosome-level genome of rare minnow using CRISPR-cas9 random mutation
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    Sequence features of retrotransposons allow for epigenetic variability
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    Acute depletion of the ARID1A subunit of SWI/SNF complexes reveals distinct pathways for activation and repression of transcription
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  93. Oct 2021
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    Conserved heterodimeric GTPase Rbg1/Tma46 promotes efficient translation in eukaryotic cells
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  95. bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com
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      DOI: 10.1002/prp2.749

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  96. www.nature.com www.nature.com
    Comparative cellular analysis of motor cortex in human, marmoset and mouse
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      DOI: 10.1038/s41586-021-03465-8

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    PIWI-mediated control of tissue-specific transposons is essential for somatic cell differentiation
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    Acrylamide modulates the mouse epididymal proteome to drive alterations in the sperm small non-coding RNA profile and dysregulate embryo development
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    Spt4 facilitates the movement of RNA polymerase II through the +2 nucleosomal barrier
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  100. Sep 2021
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    A nascent polypeptide sequence modulates DnaA translation elongation in response to nutrient availability
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      DOI: 10.7554/eLife.71611

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  102. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    LIN37-DREAM prevents DNA end resection and homologous recombination at DNA double-strand breaks in quiescent cells
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      DOI: 10.7554/eLife.68466

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    Discovery of synthetic lethal and tumor suppressor paralog pairs in the human genome
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  104. Aug 2021
  105. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Nascent transcript and single-cell RNA-seq analysis defines the mechanism of action of the LSD1 inhibitor INCB059872 in myeloid leukemia
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      DOI: 10.1016/j.gene.2020.144758

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    Cardiac dysfunction affects eye development and vision by reducing supply of lipids in fish
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    Genome-wide and sister chromatid-resolved profiling of protein occupancy in replicated chromatin with ChOR-seq and SCAR-seq
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  108. www.sciencedirect.com www.sciencedirect.com
    A composite DNA element that functions as a maintainer required for epigenetic inheritance of heterochromatin
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    Heterochromatin-dependent transcription of satellite DNAs in the Drosophila melanogaster female germline
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    Rapid spread of a densovirus in a major crop pest following wide-scale adoption of Bt-cotton in China
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      DOI: 10.7554/eLife.66913

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    Glucocorticoid Receptor–Tethered Mineralocorticoid Receptors Increase Glucocorticoid-Induced Transcriptional Responses
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      DOI: 10.1210/en.2018-00819

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  112. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  157. academic.oup.com academic.oup.com
    Identification of Betamethasone-Regulated Target Genes and Cell Pathways in Fetal Rat Lung Mesenchymal Fibroblasts
    1
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      Bowtie

      DOI: 10.1210/en.2018-01071

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    AGO CLIP Reveals an Activated Network for Acute Regulation of Brain Glutamate Homeostasis in Ischemic Stroke
    1
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  159. diabetes.diabetesjournals.org diabetes.diabetesjournals.org
    HLA Class II Antigen Processing and Presentation Pathway Components Demonstrated by Transcriptome and Protein Analyses of Islet β-Cells From Donors With Type 1 Diabetes
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  160. cancerres.aacrjournals.org cancerres.aacrjournals.org
    Enhancer Domains in Gastrointestinal Stromal Tumor Regulate KIT Expression and Are Targetable by BET Bromodomain Inhibition
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      DOI: 10.1158/0008-5472.CAN-18-1888

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    An Atlas of Human Glycosylation Pathways Enables Display of the Human Glycome by Gene Engineered Cells
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    Natural changes in light interact with circadian regulation at promoters to control gene expression in cyanobacteria
    1
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      DOI: 10.7554/eLife.32032

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  163. academic.oup.com academic.oup.com
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      RRID:SCR_005476

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  164. academic.oup.com academic.oup.com
    Maser: one-stop platform for NGS big data from analysis to visualization
    2
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      SCR_005476

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  165. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  166. www.eneuro.org www.eneuro.org
    Identification of Immediate Early Genes in the Nervous System of Snail Helix lucorum
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  167. elifesciences.org elifesciences.org
    Analysis of the genomic architecture of a complex trait locus in hypertensive rat models links Tmem63c to kidney damage
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  168. academic.oup.com academic.oup.com
    Sex-Biased Gene Expression and Dosage Compensation on the Artemia franciscana Z-Chromosome
    1
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      Bowtie2

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  169. www.sciencedirect.com www.sciencedirect.com
    Mapping the Global Chromatin Connectivity Network for Sox2 Function in Neural Stem Cell Maintenance
    2
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      Bowtie version 1.1.0 (for H3K27ac/H3K4me1 ChIPseq)

      DOI: 10.1016/j.stem.2019.02.004

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      Bowtie version 0.12.5 (for SOX2 ChIPseq)

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    sciencedirect.com/science/article/pii/S1934590919300463
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    Histone H3K9 Methyltransferase G9a in Oocytes Is Essential for Preimplantation Development but Dispensable for CG Methylation Protection
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      bowtie2 v2.2.9

      DOI: 10.1016/j.celrep.2019.03.002

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    PI3K Inhibition Activates SGK1 via a Feedback Loop to Promote Chromatin-Based Regulation of ER-Dependent Gene Expression
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      Bowtie2

      DOI: 10.1016/j.celrep.2019.02.111

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    sciencedirect.com/science/article/pii/S2211124719302979
  172. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Analysis of long non‐coding RNA expression profiles in neonatal rats with hypoxic‐ischemic brain damage
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      DOI: 10.1111/jnc.14689

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    onlinelibrary.wiley.com/doi/full/10.1111/jnc.14689
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    Targeted Disruption of HLA Genes via CRISPR-Cas9 Generates iPSCs with Enhanced Immune Compatibility
    1
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      Bowtie

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  174. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Cooperation of PU.1 With IRF8 and NFATc1 Defines Chromatin Landscapes During RANKL‐Induced Osteoclastogenesis
    1
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      DOI: 10.1002/jbmr.3689

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  175. www.sciencedirect.com www.sciencedirect.com
    Ribosomal Proteins Regulate MHC Class I Peptide Generation for Immunosurveillance
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      Bowtie

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    sciencedirect.com/science/article/pii/S1097276518310967
  176. www.sciencedirect.com www.sciencedirect.com
    Iruka Eliminates Dysfunctional Argonaute by Selective Ubiquitination of Its Empty State
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      Bowtie

      DOI: 10.1016/j.molcel.2018.10.033

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  177. elifesciences.org elifesciences.org
    Untitled document
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      DOI: 10.7554/eLife.20375

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    elifesciences.org/articles/20375
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    Global Inhibition with Specific Activation: How p53 and MYC Redistribute the Transcriptome in the DNA Double-Strand Break Response
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      RRID:SCR_005476

      DOI: 10.1016/j.molcel.2017.07.028

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  179. www.frontiersin.org www.frontiersin.org
    Stem Cell Transcription Factor FoxO Controls Microbiome Resilience in Hydra
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      RRID:SCR_005476

      DOI: 10.3389/fmicb.2018.00629

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    frontiersin.org/articles/10.3389/fmicb.2018.00629/full
  180. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    DNA methylation directs genomic localization of Mbd2 and Mbd3 in embryonic stem cells
    4
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      SCR_005476

      DOI: 10.7554/eLife.21964

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      SCR_005476

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      SCR_005476

      DOI: 10.7554/eLife.21964

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      SCR_005476

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  181. www.sciencedirect.com www.sciencedirect.com
    C. elegans Heterochromatin Factor SET-32 Plays an Essential Role in Transgenerational Establishment of Nuclear RNAi-Mediated Epigenetic Silencing
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      Bowtie

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    sciencedirect.com/science/article/pii/S2211124718316905
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    foxF-1 Controls Specification of Non-body Wall Muscle and Phagocytic Cells in Planarians
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      bowtie

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    sciencedirect.com/science/article/pii/S0960982218313599
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    A CHAF1B-Dependent Molecular Switch in Hematopoiesis and Leukemia Pathogenesis
    1
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      Bowtie

      DOI: 10.1016/j.ccell.2018.10.004

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    sciencedirect.com/science/article/pii/S1535610818304707
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    T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation
    1
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      Bowtie

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    Defining T Cell States Associated with Response to Checkpoint Immunotherapy in Melanoma
    1
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      Bowtie

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  186. www.sciencedirect.com www.sciencedirect.com
    Genome-wide Rules of Nucleosome Phasing in Drosophila
    1
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      Bowtie

      DOI: 10.1016/j.molcel.2018.09.032

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    Succinate Dehydrogenase Supports Metabolic Repurposing of Mitochondria to Drive Inflammatory Macrophages
    2
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      Bowtie

      DOI: 10.1016/j.cell.2016.08.064

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      Bowtie

      DOI: 10.1016/j.cell.2016.08.064

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  188. www.sciencedirect.com www.sciencedirect.com
    Modeling Enzyme Processivity Reveals that RNA-Seq Libraries Are Biased in Characteristic and Correctable Ways
    2
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      Bowtie

      DOI: 10.1016/j.cels.2016.10.012

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      Bowtie

      DOI: 10.1016/j.cels.2016.10.012

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  189. www.sciencedirect.com www.sciencedirect.com
    RNA Binding to CBP Stimulates Histone Acetylation and Transcription
    2
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      Bowtie 1.1

      DOI: 10.1016/j.cell.2016.12.020

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      Bowtie 1.1

      DOI: 10.1016/j.cell.2016.12.020

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    sciencedirect.com/science/article/pii/S0092867416317366
  190. academic.oup.com academic.oup.com
    Chromosomal-level assembly of yellow catfish genome using third-generation DNA sequencing and Hi-C analysis
    1
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      RRID:SCR_005476

      DOI: 10.1093/gigascience/giy120

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    academic.oup.com/gigascience/article/7/11/giy120/5106933
  191. www.sciencedirect.com www.sciencedirect.com
    Ezh2 and Runx1 Mutations Collaborate to Initiate Lympho-Myeloid Leukemia in Early Thymic Progenitors
    1
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      RRID:SCR_005476

      DOI: 10.1016/j.ccell.2018.01.006

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  192. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Transcriptome profiling of developing photoreceptor subtypes reveals candidate genes involved in avian photoreceptor diversification
    2
    1. scibot 27 Jul 2021
      OMICS_00653

      DOI: 10.1002/cne.23702

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      OMICS_00653

      DOI: 10.1002/cne.23702

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    onlinelibrary.wiley.com/doi/10.1002/cne.23702/full
  193. f1000research.com f1000research.com
    F1000Research Article: PEGS: An efficient tool for gene set enrichment within defined sets of genomic intervals.
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      DOI: 10.12688/f1000research.53926.1

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    f1000research.com/articles/10-570
  194. www.sciencedirect.com www.sciencedirect.com
    Targeted protein degradation reveals a direct role of SPT6 in RNAPII elongation and termination
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      DOI: 10.1016/j.molcel.2021.06.016

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    sciencedirect.com/science/article/pii/S1097276521004962
  195. Jun 2021
  196. www.sciencedirect.com www.sciencedirect.com
    Pharmacologic modulation of RNA splicing enhances anti-tumor immunity
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      DOI: 10.1016/j.cell.2021.05.038

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    sciencedirect.com/science/article/pii/S0092867421006905
  197. www.sciencedirect.com www.sciencedirect.com
    H3K27 demethylases are dispensable for activation of Polycomb-regulated injury response genes in peripheral nerve.
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      DOI: 10.1016/j.jbc.2021.100852

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    sciencedirect.com/science/article/pii/S0021925821006505
  198. www.nature.com www.nature.com
    Pericentromeric Satellite III transcripts induce etoposide resistance
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      DOI: 10.1038/s41419-021-03810-9

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    nature.com/articles/s41419-021-03810-9
  199. May 2021
  200. link.springer.com link.springer.com
    Altered oligodendroglia and astroglia in chronic traumatic encephalopathy
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      DOI: 10.1007/s00401-021-02322-2

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    link.springer.com/article/10.1007/s00401-021-02322-2
  201. www.sciencedirect.com www.sciencedirect.com
    Rapid and inexpensive preparation of genome-wide nucleosome footprints from model and non-model organisms
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      DOI: 10.1016/j.xpro.2021.100486

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    sciencedirect.com/science/article/pii/S2666166721001933
  202. clincancerres.aacrjournals.org clincancerres.aacrjournals.org
    HAND1 and BARX1 act as transcriptional and anatomic determinants of malignancy in gastrointestinal stromal tumor
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      DOI: 10.1158/1078-0432.CCR-20-3538

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    clincancerres.aacrjournals.org/content/27/6/1706
  203. www.sciencedirect.com www.sciencedirect.com
    Sequential CRISPR gene editing in human iPSCs charts the clonal evolution of myeloid leukemia and identifies early disease targets
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      DOI: 10.1016/j.stem.2021.01.011

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    sciencedirect.com/science/article/pii/S1934590921000114
  204. www.sciencedirect.com www.sciencedirect.com
    Non-canonical Targets of HIF1a Impair Oligodendrocyte Progenitor Cell Function
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      DOI: 10.1016/j.stem.2020.09.019

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    sciencedirect.com/science/article/pii/S193459092030494X
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    An intrinsically disordered region-mediated confinement state contributes to the dynamics and function of transcription factors
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      DOI: 10.1016/j.molcel.2021.01.013

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    sciencedirect.com/science/article/pii/S1097276521000137
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    Repetitive Elements Trigger RIG-I-like Receptor Signaling that Regulates the Emergence of Hematopoietic Stem and Progenitor Cells
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      DOI: 10.1016/j.immuni.2020.10.007

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    sciencedirect.com/science/article/pii/S1074761320304489
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    A Prion-like Domain in Transcription Factor EBF1 Promotes Phase Separation and Enables B Cell Programming of Progenitor Chromatin
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      DOI: 10.1016/j.immuni.2020.10.009

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    sciencedirect.com/science/article/pii/S1074761320304507
  208. www.nature.com www.nature.com
    Transcription factor chromatin profiling genome-wide using uliCUT&RUN in single cells and individual blastocysts
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      DOI: 10.1038/s41596-021-00516-2

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  209. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Defects in translation-dependent quality control pathways lead to convergent molecular and neurodevelopmental pathology
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      DOI: 10.7554/eLife.66904

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    ncbi.nlm.nih.gov/pmc/articles/PMC8075583/
  210. Apr 2021
  211. www.sciencedirect.com www.sciencedirect.com
    Recording of DNA-binding events reveals the importance of a repurposed Candida albicans regulatory network for gut commensalism
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      DOI: 10.1016/j.chom.2021.03.019

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    sciencedirect.com/science/article/pii/S1931312821001475
  212. www.sciencedirect.com www.sciencedirect.com
    Acetylation of Cytidine Residues Boosts HIV-1 Gene Expression by Increasing Viral RNA Stability
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      DOI: 10.1016/j.chom.2020.05.011

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    sciencedirect.com/science/article/pii/S1931312820302936
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    5-hydroxymethylcytosine is dynamically regulated during forebrain organoid development and aberrantly altered in Alzheimer’s disease
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      DOI: 10.1016/j.celrep.2021.109042

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    sciencedirect.com/science/article/pii/S2211124721003582
  214. www.sciencedirect.com www.sciencedirect.com
    Efficient RNA polymerase II pause release requires U2 snRNP function
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      DOI: 10.1016/j.molcel.2021.02.016

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    sciencedirect.com/science/article/pii/S109727652100126X
  215. www.cell.com www.cell.com
    IL6/STAT3 Signaling Hijacks Estrogen Receptor α Enhancers to Drive Breast Cancer Metastasis
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      DOI: 10.1016/j.ccell.2020.06.007

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    cell.com/cancer-cell/fulltext/S1535-6108(20)30311-1
  216. www.sciencedirect.com www.sciencedirect.com
    The SMC5/6 complex compacts and silences unintegrated HIV-1 DNA and is antagonized by Vpr
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      DOI: 10.1016/j.chom.2021.03.001

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    sciencedirect.com/science/article/pii/S1931312821001013
  217. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evidence for additive and synergistic action of mammalian enhancers during cell fate determination
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    1. scibot 02 Apr 2021
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      DOI: 10.7554/eLife.65381

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    ncbi.nlm.nih.gov/pmc/articles/PMC8004103/
  218. Mar 2021
  219. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Human ORC/MCM density is low in active genes and correlates with replication time but does not delimit initiation zones
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      DOI: 10.7554/eLife.62161

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    ncbi.nlm.nih.gov/pmc/articles/PMC7993996/
  220. faseb.onlinelibrary.wiley.com faseb.onlinelibrary.wiley.com
    Genomic exploration of the targets of FOXL2 and ESR2 unveils their implication in cell migration, invasion, and adhesion
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      DOI: 10.1096/fj.202002444R

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    faseb.onlinelibrary.wiley.com/doi/10.1096/fj.202002444R
  221. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Basis of specificity for a conserved and promiscuous chromatin remodeling protein
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    1. scibot 20 Mar 2021
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      DOI: 10.7554/eLife.64061

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    ncbi.nlm.nih.gov/pmc/articles/PMC7968928/
  222. elifesciences.org elifesciences.org
    HAT cofactor TRRAP modulates microtubule dynamics via SP1 signaling to prevent neurodegeneration
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      DOI: 10.7554/eLife.61531

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    elifesciences.org/articles/61531