548 Matching Annotations
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    LINE-1 retrotransposons mediate cis-acting transcriptional control in human pluripotent stem cells and regulate early brain development
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    sciencedirect.com/science/article/pii/S2666979X25002356
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    Transient gene melting governs the timing of oligodendrocyte maturation
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  4. Aug 2025
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    Genetic and Epigenetic Reprogramming of Transposable Elements Drives ecDNA-Mediated Metastatic Prostate Cancer
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    Bronze Age Yersinia pestis genome from sheep sheds light on hosts and evolution of a prehistoric plague lineage
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    The catalytic efficiency of METTL16 affects cellular processes by governing the intracellular S-adenosylmethionine setpoint
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    Functional Role of Small Extrachromosomal Circular DNA in Colorectal Cancer
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    Machine learning-based single-sample molecular classifier for cancer grading
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  12. Jul 2025
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    Protocol to distinguish pre-mRNA from mRNA in RNA-protein interaction studies
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    Predictive modeling of oocyte maternal mRNA features of five mammalian species reveals potential shared and species-restricted regulators during maturation
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    Complete loss of PAX4 causes transient neonatal diabetes in humans
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    β-catenin functions as a molecular adapter for disordered cBAF interactions
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    Variation in phenotype, genotype, and somatic diversity among asexual Schmidtea mediterranea planarians
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    TAF1 is required for fetal but not adult hematopoiesis in mice
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    The catalytic efficiency of METTL16 affects cellular processes by governing the intracellular S-adenosylmethionine setpoint
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    Shared genomic features of HIV+ diffuse large B-cell lymphoma in two African cohorts
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    Dissecting FAP+ Cell Diversity in Pancreatic Cancer Uncovers an Interferon-Response Subtype of Cancer-Associated Fibroblasts with Tumor-Restraining Properties
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    The genome of Hippophae salicifolia provides new insights into the sexual differentiation of sea buckthorn
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    Failed Cellular Surveillance Enables Pathogenic Matrix Deposition in a COL2A1-Related Osteoarthritis
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  28. Jun 2025
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    Altered cofactor recruitment and nucleosome dynamics underlie bisphenol A’s impact on ERα-mediated transcriptional bursting
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  34. May 2025
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    Complete Loss of PAX4 causes Transient Neonatal Diabetes in Humans
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  43. Apr 2025
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    α-Ketoglutarate promotes trophectoderm induction and maturation from naive human embryonic stem cells
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    Intestinal secretory differentiation reflects niche-driven phenotypic and epigenetic plasticity of a common signal-responsive terminal cell
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  50. Mar 2025
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    Glucose modulates IRF6 transcription factor dimerization to enable epidermal differentiation
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    The assembly and annotation of two teinturier grapevine varieties, Dakapo and Rubired
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  54. Feb 2025
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    PARP Inhibitors Differentially Regulate Immune Responses in Distinct Genetic Backgrounds of High-Grade Serous Tubo-Ovarian Carcinoma
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    The telomere-to-telomere genome of flowering cherry (Prunus campanulata) reveals genomic evolution of the subgenus Cerasus
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    Multiomic QTL mapping reveals phenotypic complexity of GWAS loci and prioritizes putative causal variants
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    Adenosine-deaminase-acting-on-RNA-1 facilitates T-cell migration toward human melanoma cells
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    Systematic characterization of p53-regulated long non-coding RNAs across human cancers reveals remarkable heterogeneity among different tumor types
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    Advancing the Indian cattle pangenome: characterizing non-reference sequences in Bos indicus
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  62. Jan 2025
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    A chromosome-level, haplotype-resolved genome assembly and annotation for the Eurasian minnow (Leuciscidae: Phoxinus phoxinus) provide evidence of haplotype diversity
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    Cytoplasmic mRNA decay controlling inflammatory gene expression is determined by pre-mRNA fate decision
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    Natural killer cell–mediated cytotoxicity shapes the clonal evolution of B cell leukaemia
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    FOXR2 Targets LHX6+/DLX+ Neural Lineages to Drive Central Nervous System Neuroblastoma
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    Effects of gene dosage on cognitive ability: A function-based association study across brain and non-brain processes
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    KDM6B-dependent epigenetic programming of uterine fibroblasts in early pregnancy regulates parturition timing in mice
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    The genome of the sapphire damselfish Chrysiptera cyanea: a new resource to support further investigation of the evolution of Pomacentrids
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    Increased local DNA methylation disorder in AMLs with DNMT3A-destabilizing variants and its clinical implication
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    A single-nuclei transcriptome census of the Arabidopsis maturing root identifies that MYB67 controls phellem cell maturation
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    Non-cell-autonomous regulation of mTORC2 by Hedgehog signaling maintains lipid homeostasis
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    Splenic fibroblasts control marginal zone B cell movement and function via two distinct Notch2-dependent regulatory programs
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  77. Dec 2024
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    A genome-wide nucleosome-resolution map of promoter-centered interactions in human cells corroborates the enhancer-promoter looping model
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    Single cell long read whole genome sequencing reveals somatic transposon activity in human brain
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    Dominant-negative TP53 mutations potentiated by the HSF1-regulated proteostasis network
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    ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF
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    PAD2-Mediated Citrullination Contributes to Efficient Oligodendrocyte Differentiation and Myelination
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    The telomere-to-telomere (T2T) genome provides insights into the evolution of specialized centromere sequences in sandalwood
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    DNA hypomethylation promotes UHRF1-and SUV39H1/H2-dependent crosstalk between H3K18ub and H3K9me3 to reinforce heterochromatin states
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    Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
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  86. Nov 2024
  87. www.biorxiv.org www.biorxiv.org
    Human cartilage model of the precocious osteoarthritis-inducing COL2A1 p.Arg719Cys reveals pathology-driving matrix defects and a failure of the ER proteostasis network to recognize the defective procollagen-II
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  89. Oct 2024
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    HOXDeRNA activates a cancerous transcription program and super enhancers via genome-wide binding
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    Systematic Analysis of Intronic miRNAs Reveals Cooperativity within the Multicomponent FTX Locus to Promote Colon Cancer Development
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  92. Sep 2024
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    Genomic surveillance as a scalable framework for precision phage therapy against antibiotic-resistant pathogens
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    SJPedPanel: A pan-cancer gene panel for childhood malignancies to enhance cancer monitoring and early detection
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    The Proteogenomics of Prostate Cancer Radioresistance
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    Epitranscriptomic m6A Regulation of Axon Regeneration in the Adult Mammalian Nervous System
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    Lysosome-related organelle integrity suppresses TIR-1 aggregation to restrain toxic propagation of p38 innate immunity
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  189. Jul 2023
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    embopress.org/doi/10.15252/embr.202256492
  198. aacrjournals.org aacrjournals.org
    FOXA1 reprogramming dictates retinoid X receptor response in ESR1 mutant breast cancer
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    aacrjournals.org/mcr/article/21/6/591/726508/FOXA1-Reprogramming-Dictates-Retinoid-X-Receptor
  199. May 2023
  200. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evolution of Resistance to Irinotecan in Cancer Cells Involves Generation of Topoisomerase-Guided Mutations in Non-Coding Genome That Reduce the Chances of DNA Breaks
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    ncbi.nlm.nih.gov/pmc/articles/PMC10218574/
  201. www.biorxiv.org www.biorxiv.org
    Transition from Transient DNA Rereplication to Inherited Gene Amplification Following Prolonged Environmental Stress
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    biorxiv.org/content/10.1101/2023.05.08.539886v1
  202. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Generating minimum set of gRNA to cover multiple targets in multiple genomes with MINORg
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    ncbi.nlm.nih.gov/pmc/articles/PMC10164578/
  203. www.biorxiv.org www.biorxiv.org
    L1 retrotransposons drive human neuronal transcriptome complexity and functional diversification
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    biorxiv.org/content/10.1101/2023.03.04.531072v1
  204. www.sciencedirect.com www.sciencedirect.com
    Functional interplay between Mediator and RSC chromatin remodeling complex controls nucleosome-depleted region maintenance at promoters
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    sciencedirect.com/science/article/pii/S221112472300476X
  205. Apr 2023
  206. www.sciencedirect.com www.sciencedirect.com
    A hyper-quiescent chromatin state formed during aging is reversed by regeneration
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    sciencedirect.com/science/article/pii/S1097276523002496
  207. www.sciencedirect.com www.sciencedirect.com
    Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population
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    sciencedirect.com/science/article/pii/S0960982223004591
  208. www.sciencedirect.com www.sciencedirect.com
    Comprehensive epigenomic profiling reveals the extent of disease-specific chromatin states and informs target discovery in ankylosing spondylitis
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    sciencedirect.com/science/article/pii/S2666979X23000721
  209. www.sciencedirect.com www.sciencedirect.com
    Novel enhancers conferring compensatory transcriptional regulation of Nkx2-5 in heart development
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    sciencedirect.com/science/article/pii/S2589004223005862
  210. www.sciencedirect.com www.sciencedirect.com
    Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia
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    sciencedirect.com/science/article/pii/S2211124723003844
  211. 52.53.155.43 52.53.155.43
    Active maintenance of CD8+ T cell naïvety through regulation of global genome architecture
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    52.53.155.43/466ebedd8046ca94e96cd8cd2fcd3a0cdd9678e2/2023.02.26.530139v1.full-html.html
  212. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    SWI/SNF Blockade Disrupts PU.1-Directed Enhancer Programs in Normal Hematopoietic Cells and Acute Myeloid Leukemia
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    ncbi.nlm.nih.gov/pmc/articles/PMC10071820/
  213. Mar 2023
  214. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the roundjaw bonefish (Albula glossodonta), a vulnerable circumtropical sportfish
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    ncbi.nlm.nih.gov/pmc/articles/PMC10038134/
  215. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    ViReMa: a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids
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    ncbi.nlm.nih.gov/pmc/articles/PMC10025937/
  216. www.sciencedirect.com www.sciencedirect.com
    A central chaperone-like role for 14-3-3 proteins in human cells
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    sciencedirect.com/science/article/pii/S1097276523001211
  217. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    MeCP2 regulates Gdf11, a dosage-sensitive gene critical for neurological function
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    ncbi.nlm.nih.gov/pmc/articles/PMC9977283/
  218. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The genome of a giant (trevally): Caranx ignobilis
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    ncbi.nlm.nih.gov/pmc/articles/PMC9694125/
  219. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-scale assembly of the highly heterozygous genome of red clover (Trifolium pratense L.), an allogamous forage crop species
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    ncbi.nlm.nih.gov/pmc/articles/PMC9650271/
  220. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The first complete mitochondrial genome of Diadema antillarum (Diadematoida, Diadematidae)
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    ncbi.nlm.nih.gov/pmc/articles/PMC9693923/
  221. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    svaRetro and svaNUMT: modular packages for annotating retrotransposed transcripts and nuclear integration of mitochondrial DNA in genome sequencing data
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    ncbi.nlm.nih.gov/pmc/articles/PMC9694029/
  222. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-quality draft genome for Melaleuca alternifolia (tea tree): a new platform for evolutionary genomics of myrtaceous terpene-rich species
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    ncbi.nlm.nih.gov/pmc/articles/PMC9650293/
  223. Feb 2023
  224. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of Musa beccarii shows extensive chromosomal rearrangements and genome expansion during evolution of Musaceae genomes
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    ncbi.nlm.nih.gov/pmc/articles/PMC9941839/
  225. www.sciencedirect.com www.sciencedirect.com
    A chromosome-level genome assembly of Ostrea denselamellosa provides initial insights into its evolution
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    sciencedirect.com/science/article/pii/S0888754323000265