407 Matching Annotations
  1. Feb 2022
  2. www.sciencedirect.com www.sciencedirect.com
    EBF1 nuclear repositioning instructs chromatin refolding to promote therapy resistance in T leukemic cells
    1
    1. scibot 23 Feb 2022
      RRID:SCR_006525

      DOI: 10.1016/j.molcel.2022.01.015

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    sciencedirect.com/science/article/pii/S1097276522000582
  3. www.sciencedirect.com www.sciencedirect.com
    Simultaneous cellular and molecular phenotyping of embryonic mutants using single-cell regulatory trajectories
    1
    1. scibot 18 Feb 2022
      RRID:SCR_006525

      DOI: 10.1016/j.devcel.2022.01.016

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    sciencedirect.com/science/article/pii/S1534580722000557
  4. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-cell analysis of human glioma and immune cells identifies S100A4 as an immunotherapy target
    1
    1. scibot 17 Feb 2022
      RRID:SCR_006525

      DOI: 10.1038/s41467-022-28372-y

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    ncbi.nlm.nih.gov/pmc/articles/PMC8828877/
  5. Jan 2022
  6. www.sciencedirect.com www.sciencedirect.com
    Construction of Strand-seq libraries in open nanoliter arrays
    1
    1. scibot 26 Jan 2022
      SCR_006525

      DOI: 10.1016/j.crmeth.2021.100150

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    sciencedirect.com/science/article/pii/S2667237521002277
  7. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Novel variants underlying autosomal recessive neurodevelopmental disorders with intellectual disability in Iranian consanguineous families
    1
    1. scibot 22 Jan 2022
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      DOI: 10.1002/jcla.24241

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    onlinelibrary.wiley.com/doi/full/10.1002/jcla.24241
  8. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    PRC1 sustains the integrity of neural fate in the absence of PRC2 function
    1
    1. scibot 22 Jan 2022
      RRID:SCR_006525

      DOI: 10.7554/eLife.72769

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    ncbi.nlm.nih.gov/pmc/articles/PMC8765755/
  9. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Enhancer RNA Expression in Response to Glucocorticoid Treatment in Murine Macrophages
    1
    1. scibot 12 Jan 2022
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      DOI: 10.3390/cells11010028

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    ncbi.nlm.nih.gov/pmc/articles/PMC8744892/
  10. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    MAP3K7 loss drives enhanced androgen signaling and independently confers risk of recurrence in prostate cancer with joint loss of CHD1
    1
    1. scibot 05 Jan 2022
      RRID:SCR_006525

      DOI: 10.1158/1541-7786.MCR-20-0913

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    ncbi.nlm.nih.gov/pmc/articles/PMC8254790/
  11. Dec 2021
  12. www.sciencedirect.com www.sciencedirect.com
    Stage-stratified molecular profiling of non-muscle-invasive bladder cancer enhances biological, clinical, and therapeutic insight
    1
    1. scibot 22 Dec 2021
      RRID:SCR_006525

      DOI: 10.1016/j.xcrm.2021.100472

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    sciencedirect.com/science/article/pii/S266637912100344X
  13. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    ARID4B is critical for mouse embryonic stem cell differentiation towards mesoderm and endoderm, linking epigenetics to pluripotency exit
    1
    1. scibot 21 Dec 2021
      RRID:SCR_006525

      DOI: 10.1074/jbc.RA120.015534

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    ncbi.nlm.nih.gov/pmc/articles/PMC7762958/
  14. www.cell.com www.cell.com
    MYC assembles and stimulates topoisomerases 1 and 2 in a “topoisome”
    1
    1. scibot 10 Dec 2021
      RRID:SCR_006525

      DOI: 10.1016/j.molcel.2021.11.016

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    cell.com/molecular-cell/fulltext/S1097-2765(21)00996-5
  15. academic.oup.com academic.oup.com
    Highly accurate whole-genome imputation of SARS-CoV-2 from partial or low-quality sequences
    1
    1. scibot 07 Dec 2021
      RRID:SCR_006525

      DOI: 10.1093/gigascience/giab078

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    academic.oup.com/gigascience/article/10/12/giab078/6448505
  16. Nov 2021
  17. www.sciencedirect.com www.sciencedirect.com
    Topoisomerase 1 activity during mitotic transcription favors the transition from mitosis to G1
    1
    1. scibot 12 Nov 2021
      RRID:SCR_006525

      DOI: 10.1016/j.molcel.2021.10.015

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    sciencedirect.com/science/article/pii/S1097276521009072
  18. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Sequence features of retrotransposons allow for epigenetic variability
    1
    1. scibot 05 Nov 2021
      RRID:SCR_006525

      DOI: 10.7554/eLife.71104

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    ncbi.nlm.nih.gov/pmc/articles/PMC8555987/
  19. Oct 2021
  20. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Simplifying the development of portable, scalable, and reproducible workflows
    1
    1. scibot 23 Oct 2021
      RRID:SCR_006525

      DOI: 10.7554/eLife.71069

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    ncbi.nlm.nih.gov/pmc/articles/PMC8514239/
  21. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Targeted molecular characterization of external auditory canal squamous cell carcinomas
    1
    1. scibot 18 Oct 2021
      RRID:SCR_006525

      DOI: 10.1002/lio2.654

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    onlinelibrary.wiley.com/doi/10.1002/lio2.654
  22. www.sciencedirect.com www.sciencedirect.com
    Evolutionary history of the extinct Sardinian dhole
    1
    1. scibot 16 Oct 2021
      RRID:SCR_006525

      DOI: 10.1016/j.cub.2021.09.059

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    sciencedirect.com/science/article/pii/S0960982221013154
  23. www.sciencedirect.com www.sciencedirect.com
    PIWI-mediated control of tissue-specific transposons is essential for somatic cell differentiation
    1
    1. scibot 06 Oct 2021
      RRID:SCR_006525

      DOI: 10.1016/j.celrep.2021.109776

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    sciencedirect.com/science/article/pii/S2211124721012304
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Global chromatin relabeling accompanies spatial inversion of chromatin in rod photoreceptors
    1
    1. scibot 05 Oct 2021
      RRID:SCR_006525

      DOI: 10.1126/sciadv.abj3035

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    ncbi.nlm.nih.gov/pmc/articles/PMC8462898/
  25. clincancerres.aacrjournals.org clincancerres.aacrjournals.org
    Prediction of Immunotherapy Response in Melanoma through Combined Modeling of Neoantigen Burden and Immune-Related Resistance Mechanisms
    1
    1. scibot 01 Oct 2021
      RRID:SCR_006525

      DOI: 10.1158/1078-0432.CCR-20-4314

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    clincancerres.aacrjournals.org/content/27/15/4265
  26. Sep 2021
  27. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Leveraging the Mendelian disorders of the epigenetic machinery to systematically map functional epigenetic variation
    1
    1. scibot 22 Sep 2021
      RRID:SCR_006525

      DOI: 10.7554/eLife.65884

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    ncbi.nlm.nih.gov/pmc/articles/PMC8443249/
  28. www.sciencedirect.com www.sciencedirect.com
    SPT5 stabilizes RNA polymerase II, orchestrates transcription cycles, and maintains the enhancer landscape
    1
    1. scibot 17 Sep 2021
      RRID:SCR_006525

      DOI: 10.1016/j.molcel.2021.08.029

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    sciencedirect.com/science/article/pii/S1097276521006961
  29. Aug 2021
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Cis-regulatory variants affect gene expression dynamics in yeast
    1
    1. scibot 21 Aug 2021
      RRID:SCR_006525

      DOI: 10.7554/eLife.68469

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    ncbi.nlm.nih.gov/pmc/articles/PMC8367379/
  31. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    1. scibot 10 Aug 2021
      RRID:SCR_006525

      DOI: 10.1016/j.cub.2018.12.008

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    ncbi.nlm.nih.gov/pmc/articles/PMC6345625/
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    1. scibot 08 Aug 2021
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      DOI: 10.7554/eLife.34364

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    ncbi.nlm.nih.gov/pmc/articles/PMC6175580/
  33. academic.oup.com academic.oup.com
    Untitled document
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    1. scibot 08 Aug 2021
      RRID:SCR_006525

      DOI: 10.1093/gigascience/gix044

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    academic.oup.com/gigascience/article/6/7/1/3867068
  34. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    1. scibot 04 Aug 2021
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      DOI: 10.1016/j.celrep.2019.03.108

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    ncbi.nlm.nih.gov/pmc/articles/PMC6486480/
  35. www.nature.com www.nature.com
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    1. scibot 03 Aug 2021
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      DOI: 10.1038/s41586-018-0845-0

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    nature.com/articles/s41586-018-0845-0 
  36. www.sciencedirect.com www.sciencedirect.com
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      DOI: 10.1016/j.cub.2018.11.055

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    sciencedirect.com/science/article/pii/S0960982218315549
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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      DOI: 10.1016/j.cub.2018.08.041

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    ncbi.nlm.nih.gov/pmc/articles/PMC6224481/
  38. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease
    1
    1. scibot 01 Aug 2021
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      DOI: 10.1016/j.cell.2018.08.067

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    ncbi.nlm.nih.gov/pmc/articles/PMC6176871/
  39. Jul 2021
  40. elifesciences.org elifesciences.org
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    1. scibot 31 Jul 2021
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      DOI: 10.7554/eLife.21883

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    elifesciences.org/articles/21883
  41. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Crohn’s disease polymorphism, ATG16L1 T300A, alters the gut microbiota and enhances the local Th1/Th17 response
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    1. scibot 31 Jul 2021
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      DOI: 10.7554/eLife.39982

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    ncbi.nlm.nih.gov/pmc/articles/PMC6342529/
  42. www.nature.com www.nature.com
    α-Ketoglutarate links p53 to cell fate during tumour suppression
    1
    1. scibot 30 Jul 2021
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      DOI: 10.1038/s41586-019-1577-5

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    nature.com/articles/s41586-019-1577-5
  43. elifesciences.org elifesciences.org
    RbFox1 up-regulation impairs BDNF-dependent hippocampal LTP by dysregulating TrkB isoform expression levels
    1
    1. scibot 29 Jul 2021
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      DOI: 10.7554/eLife.49673

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    elifesciences.org/articles/49673
  44. www.embopress.org www.embopress.org
    A genome‐wide screen identifies IRF2 as a key regulator of caspase‐4 in human cells
    1
    1. scibot 29 Jul 2021
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      DOI: 10.15252/embr.201948235

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    embopress.org/doi/full/10.15252/embr.201948235
  45. elifesciences.org elifesciences.org
    Toxoplasma gondii infection drives conversion of NK cells into ILC1-like cells
    1
    1. scibot 29 Jul 2021
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      DOI: 10.7554/eLife.47605

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    elifesciences.org/articles/47605
  46. academic.oup.com academic.oup.com
    Identification of Betamethasone-Regulated Target Genes and Cell Pathways in Fetal Rat Lung Mesenchymal Fibroblasts
    1
    1. scibot 29 Jul 2021
      Picard

      DOI: 10.1210/en.2018-01071

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    academic.oup.com/endo/article/160/8/1868/5490761
  47. www.sciencedirect.com www.sciencedirect.com
    Epigenetic Compensation Promotes Liver Regeneration
    1
    1. scibot 29 Jul 2021
      PICARD

      DOI: 10.1016/j.devcel.2019.05.034

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    sciencedirect.com/science/article/pii/S1534580719304472
  48. academic.oup.com academic.oup.com
    Sex-Biased Gene Expression and Dosage Compensation on the Artemia franciscana Z-Chromosome
    1
    1. scibot 28 Jul 2021
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      DOI: 10.1093/gbe/evz053

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    academic.oup.com/gbe/article/11/4/1033/5378701
  49. www.sciencedirect.com www.sciencedirect.com
    RNA Polymerase II CTD Tyrosine 1 Is Required for Efficient Termination by the Nrd1-Nab3-Sen1 Pathway
    1
    1. scibot 28 Jul 2021
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      DOI: 10.1016/j.molcel.2018.12.002

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    sciencedirect.com/science/article/pii/S1097276518310323
  50. currentprotocols.onlinelibrary.wiley.com currentprotocols.onlinelibrary.wiley.com
    High‐Resolution Chromatin Profiling Using CUT&RUN
    1
    1. scibot 28 Jul 2021
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      DOI: 10.1002/cpmb.85

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    currentprotocols.onlinelibrary.wiley.com/doi/full/10.1002/cpmb.85
  51. academic.oup.com academic.oup.com
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      DOI: 10.1093/gigascience/gix049

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    academic.oup.com/gigascience/article/6/8/gix049/3888813
  52. www.sciencedirect.com www.sciencedirect.com
    Loss of IFN-γ Pathway Genes in Tumor Cells as a Mechanism of Resistance to Anti-CTLA-4 Therapy
    2
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      RRID: SCR_006525

      DOI: 10.1016/j.cell.2016.08.069

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  53. www.sciencedirect.com www.sciencedirect.com
    Deregulated Expression of Mammalian lncRNA through Loss of SPT6 Induces R-Loop Formation, Replication Stress, and Cellular Senescence
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      Picard

      DOI: 10.1016/j.molcel.2018.10.011

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    Oncogenic Amplification of Zygotic Dux Factors in Regenerating p53-Deficient Muscle Stem Cells Defines a Molecular Cancer Subtype
    1
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      Picard

      DOI: 10.1016/j.stem.2018.10.011

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  55. www.sciencedirect.com www.sciencedirect.com
    N6-methyladenine DNA Modification in Glioblastoma
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      Picard

      DOI: 10.1016/j.cell.2018.10.006

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    ORY-1001, a Potent and Selective Covalent KDM1A Inhibitor, for the Treatment of Acute Leukemia
    1
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  57. academic.oup.com academic.oup.com
    Genome-wide analysis of the H3K27me3 epigenome and transcriptome in Brassica rapa
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      DOI: 10.1093/gigascience/giz147

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  58. Jun 2021
  59. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The transcription factor GLI1 cooperates with the chromatin remodeler SMARCA2 to regulate chromatin accessibility at distal DNA regulatory elements
    1
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      RRID:SCR_006525

      DOI: 10.1074/jbc.RA120.013268

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  60. www.sciencedirect.com www.sciencedirect.com
    Protocol for using heterologous spike-ins to normalize for technical variation in chromatin immunoprecipitation
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      DOI: 10.1016/j.xpro.2021.100609

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    SORBS2 is a genetic factor contributing to cardiac malformation of 4q deletion syndrome patients
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      DOI: 10.7554/eLife.67481

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  62. www.sciencedirect.com www.sciencedirect.com
    Highly selective brain-to-gut communication via genetically defined vagus neurons
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  63. May 2021
  64. clincancerres.aacrjournals.org clincancerres.aacrjournals.org
    Alterations in BAP1 are Associated with Cisplatin Resistance Through Inhibition of Apoptosis in Malignant Pleural Mesothelioma (MPM).
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      RRID:SCR_006525

      DOI: 10.1158/1078-0432.CCR-20-4037

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  65. www.sciencedirect.com www.sciencedirect.com
    Adult Neural Stem Cells Are Alerted by Systemic Inflammation through TNF-α Receptor Signaling
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    SAFB2 Enables the Processing of Suboptimal Stem-Loop Structures in Clustered Primary miRNA Transcripts
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    A Prion-like Domain in Transcription Factor EBF1 Promotes Phase Separation and Enables B Cell Programming of Progenitor Chromatin
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  68. onlinelibrary.wiley.com onlinelibrary.wiley.com
    How to characterize a strain? Clonal heterogeneity in industrial Saccharomyces influences both phenotypes and heterogeneity in phenotypes
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      DOI: 10.1002/yea.3562

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    Whole-genome analysis of giraffe supports four distinct species
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    Transcription factor chromatin profiling genome-wide using uliCUT&RUN in single cells and individual blastocysts
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      DOI: 10.1038/s41596-021-00516-2

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  71. Apr 2021
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    Recording of DNA-binding events reveals the importance of a repurposed Candida albicans regulatory network for gut commensalism
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      DOI: 10.1016/j.chom.2021.03.019

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    sciencedirect.com/science/article/pii/S1931312821001475
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    Chromosome-level genome assembly of the hard-shelled mussel Mytilus coruscus, a widely distributed species from the temperate areas of East Asia
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      DOI: 10.1093/gigascience/giab024

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    Distinct Classes of Complex Structural Variation Uncovered across Thousands of Cancer Genome Graphs
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    Integrated Omics of Metastatic Colorectal Cancer
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      RRID:SCR_006525

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    Analysis of Brugada syndrome loci reveals that fine-mapping clustered GWAS hits enhances the annotation of disease-relevant variants
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      DOI: 10.1016/j.xcrm.2021.100250

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    Spinal macrophages resolve nociceptive hypersensitivity after peripheral injury
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      DOI: 10.1016/j.neuron.2021.02.018

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    Immunogenomic Landscape of Hematological Malignancies
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    Messenger RNA capture sequencing of extracellular RNA from human biofluids using a comprehensive set of spike-in controls
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      DOI: 10.1016/j.xpro.2021.100475

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    A pan-cancer transcriptome analysis of exitron splicing identifies novel cancer driver genes and neoepitopes
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      DOI: 10.1016/j.molcel.2021.03.028

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    Molecular pathways behind acquired obesity: adipose tissue and skeletal muscle multiomics in monozygotic twin pairs discordant for BMI
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      RRID:SCR_006525

      DOI: 10.1016/j.xcrm.2021.100226

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    sciencedirect.com/science/article/pii/S2666379121000422
  82. Mar 2021
  83. academic.oup.com academic.oup.com
    Comparative analysis of 7 short-read sequencing platforms using the Korean Reference Genome: MGI and Illumina sequencing benchmark for whole-genome sequencing
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      RRID:SCR_006525

      DOI: 10.1093/gigascience/giab014

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    academic.oup.com/gigascience/article/10/3/giab014/6168811
  84. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Epigenetic reprogramming rewires transcription during the alternation of generations in Arabidopsis
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      RRID:SCR_006525

      DOI: 10.7554/eLife.61894

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  85. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    New Insights Into Mitochondrial DNA Reconstruction and Variant Detection in Ancient Samples
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      RRID:SCR_006525

      DOI: 10.3389/fgene.2021.619950

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  86. academic.oup.com academic.oup.com
    Germline EGFR variants are over-represented in adolescents and young adults (AYA) with adrenocortical carcinoma
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      DOI: 10.1093/hmg/ddaa268

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    academic.oup.com/hmg/article/29/22/3679/6035190
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    Convergent organization of aberrant MYB complex controls oncogenic gene expression in acute myeloid leukemia
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      DOI: 10.7554/eLife.65905

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    ncbi.nlm.nih.gov/pmc/articles/PMC7886351/
  88. Feb 2021
  89. www.sciencedirect.com www.sciencedirect.com
    Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma
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      DOI: 10.1016/j.cell.2020.11.041

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    sciencedirect.com/science/article/pii/S0092867420316135
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    Gene-Specific Linear Trends Constrain Transcriptional Variability of the Toll-like Receptor Signaling
    1
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      DOI: 10.1016/j.cels.2020.08.007

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    ncbi.nlm.nih.gov/pmc/articles/PMC7521480/
  91. academic.oup.com academic.oup.com
    Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines
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      DOI: 10.1093/gigascience/giaa007

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    academic.oup.com/gigascience/article/9/2/giaa007/5728470
  92. academic.oup.com academic.oup.com
    Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?
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      DOI: 10.1093/gigascience/giz158

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  93. elifesciences.org elifesciences.org
    Pancreatic progenitor epigenome maps prioritize type 2 diabetes risk genes with roles in development
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      DOI: 10.7554/eLife.59067

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    elifesciences.org/articles/59067
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    The glucocorticoid receptor recruits the COMPASS complex to regulate inflammatory transcription at macrophage enhancers
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      DOI: 10.1016/j.celrep.2021.108742

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  95. Jan 2021
  96. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Failures of nerve regeneration caused by aging or chronic denervation are rescued by restoring Schwann cell c-Jun
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      DOI: 10.7554/eLife.62232

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    Re-expression of SMARCA4/BRG1 in small cell carcinoma of ovary, hypercalcemic type (SCCOHT) promotes an epithelial-like gene signature through an AP-1-dependent mechanism
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    ncbi.nlm.nih.gov/pmc/articles/PMC7813545/
  98. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Individual differences in honey bee behavior enabled by plasticity in brain gene regulatory networks
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      DOI: 10.7554/eLife.62850

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  99. Dec 2020
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    Comprehensive Multi-omics Analysis Reveals Mitochondrial Stress as a Central Biological Hub for Spaceflight Impact
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    Chromosomal genome of Triplophysa bleekeri provides insights into its evolution and environmental adaptation
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    Turnip mosaic virus in oilseed rape activates networks of sRNA-mediated interactions between viral and host genomes
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    Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes
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    Rapid Dynamics of Signal-Dependent Transcriptional Repression by Capicua
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    Construction of a chromosome-scale long-read reference genome assembly for potato
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    Endogenous itaconate is not required for particulate matter-induced NRF2 expression or inflammatory response
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    ZCWPW1 is recruited to recombination hotspots by PRDM9 and is essential for meiotic double strand break repair
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    Senescence-Induced Vascular Remodeling Creates Therapeutic Vulnerabilities in Pancreas Cancer
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    Direct Comparison of Mononucleated and Binucleated Cardiomyocytes Reveals Molecular Mechanisms Underlying Distinct Proliferative Competencies
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    Genomic consequences of dietary diversification and parallel evolution due to nectarivory in leaf-nosed bats
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    Genetic Variation in Type 1 Diabetes Reconfigures the 3D Chromatin Organization of T Cells and Alters Gene Expression
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    Umbilical cord blood-derived ILC1-like cells constitute a novel precursor for mature KIR+NKG2A- NK cells
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    Global genome diversity of the Leishmania donovani complex
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    Lactate production by Staphylococcus aureus biofilm inhibits HDAC11 to reprogramme the host immune response during persistent infection
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    A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning
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    Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease
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    Investigating Human Mitochondrial Genomes in Single Cells
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    A Preliminary Study to Investigate the Genetic Background of Longevity Based on Whole-Genome Sequence Data of Two Methuselah Dogs
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    Gene-Specific Linear Trends Constrain Transcriptional Variability of the Toll-like Receptor Signaling
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    C/EBPα and GATA-2 Mutations Induce Bilineage Acute Erythroid Leukemia through Transformation of a Neomorphic Neutrophil-Erythroid Progenitor
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    Ancient Bacterial Genomes Reveal a High Diversity of Treponema pallidum Strains in Early Modern Europe
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    Genomic Rewiring of SOX2 Chromatin Interaction Network during Differentiation of ESCs to Postmitotic Neurons
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    The role of Rif1 in telomere length regulation is separable from its role in origin firing
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    Genome-Scale CRISPR Screening in Human Intestinal Organoids Identifies Drivers of TGF-β Resistance
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    Transposase-assisted tagmentation of RNA/DNA hybrid duplexes
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    Analysis of zebrafish periderm enhancers facilitates identification of a regulatory variant near human KRT8/18
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    Sphingosine 1-phosphate-regulated transcriptomes in heterogenous arterial and lymphatic endothelium of the aorta
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    Identification of scavenger receptor B1 as the airway microfold cell receptor for Mycobacterium tuberculosis
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  130. Jan 2020
  131. www.sciencedirect.com www.sciencedirect.com
    CoBATCH for High-Throughput Single-Cell Epigenomic Profiling
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    The Ovulatory Signal Precipitates LRH-1 Transcriptional Switching Mediated by Differential Chromatin Accessibility
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    GCNA Interacts with Spartan and Topoisomerase II to Regulate Genome Stability
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    Global donor and acceptor splicing site kinetics in human cells
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    Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle
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    Tau-Mediated Disruption of the Spliceosome Triggers Cryptic RNA Splicing and Neurodegeneration in Alzheimer’s Disease
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    A Patient-Derived Glioblastoma Organoid Model and Biobank Recapitulates Inter- and Intra-tumoral Heterogeneity
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    Recurrent SMARCB1 Mutations Reveal a Nucleosome Acidic Patch Interaction Site That Potentiates mSWI/SNF Complex Chromatin Remodeling
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    Quantification of Differential Transcription Factor Activity and Multiomics-Based Classification into Activators and Repressors: diffTF
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    A Single-Cell Transcriptomic Atlas of Human Neocortical Development during Mid-gestation
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  141. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    CTCF confers local nucleosome resiliency after DNA replication and during mitosis
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    Identification and Analyses of Extra-Cranial and Cranial Rhabdoid Tumor Molecular Subgroups Reveal Tumors with Cytotoxic T Cell Infiltration
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    The Crohn’s disease polymorphism, ATG16L1 T300A, alters the gut microbiota and enhances the local Th1/Th17 response
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    Oncogenic Notch Promotes Long-Range Regulatory Interactions within Hyperconnected 3D Cliques
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    Comparative analyses identify genomic features potentially involved in the evolution of birds-of-paradise
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    Maternal Ribosomes Are Sufficient for Tissue Diversification during Embryonic Development in C. elegans
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    The SS18-SSX Oncoprotein Hijacks KDM2B-PRC1.1 to Drive Synovial Sarcoma
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    Histone Deacetylases 1 and 2 Regulate Microglia Function during Development, Homeostasis, and Neurodegeneration in a Context-Dependent Manner
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    Ribosome Levels Selectively Regulate Translation and Lineage Commitment in Human Hematopoiesis
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    MYC Interacts with the G9a Histone Methyltransferase to Drive Transcriptional Repression and Tumorigenesis
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    Genetic Modulation of RNA Splicing with a CRISPR-Guided Cytidine Deaminase
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    Independent assessment and improvement of wheat genome sequence assemblies using Fosill jumping libraries
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    Proteomics, Post-translational Modifications, and Integrative Analyses Reveal Molecular Heterogeneity within Medulloblastoma Subgroups
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    A Comprehensive Roadmap of Murine Spermatogenesis Defined by Single-Cell RNA-Seq
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    Identification of Therapeutic Targets in Rhabdomyosarcoma through Integrated Genomic, Epigenomic, and Proteomic Analyses
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    Neutralizing Gatad2a-Chd4-Mbd3/NuRD Complex Facilitates Deterministic Induction of Naive Pluripotency
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    Architectural Proteins and Pluripotency Factors Cooperate to Orchestrate the Transcriptional Response of hESCs to Temperature Stress
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    Coordinated Control of mRNA and rRNA Processing Controls Embryonic Stem Cell Pluripotency and Differentiation
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    Human ADAR1 Prevents Endogenous RNA from Triggering Translational Shutdown
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    An Integrated Genome-wide CRISPRa Approach to Functionalize lncRNAs in Drug Resistance
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    Evidence of evolutionary history and selective sweeps in the genome of Meishan pig reveals its genetic and phenotypic characterization
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    Lineage-Determining Transcription Factor TCF-1 Initiates the Epigenetic Identity of T Cells
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    Dissecting the Causal Mechanism of X-Linked Dystonia-Parkinsonism by Integrating Genome and Transcriptome Assembly
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    Direct Promoter Repression by BCL11A Controls the Fetal to Adult Hemoglobin Switch
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    Chemoresistance Evolution in Triple-Negative Breast Cancer Delineated by Single-Cell Sequencing
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    Base-Resolution Analysis of DNA Methylation Patterns Downstream of Dnmt3a in Mouse Naïve B Cells
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    Chromatin Accessibility-Based Characterization of the Gene Regulatory Network Underlying Plasmodium falciparum Blood-Stage Development
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    The Origins and Vulnerabilities of Two Transmissible Cancers in Tasmanian Devils
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    The Immune Landscape of Cancer
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    Explosive mutation accumulation triggered by heterozygous human Pol ε proofreading-deficiency is driven by suppression of mismatch repair
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      Curator: @evieth

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    elifesciences.org/articles/32692
  186. www.sciencedirect.com www.sciencedirect.com
    Reducing Pericyte-Derived Scarring Promotes Recovery after Spinal Cord Injury
    1
    1. scibot 05 Nov 2018
      Picard Tools

      Curator: @evieth

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    sciencedirect.com/science/article/pii/S009286741830148X
  187. elifesciences.org elifesciences.org
    Integration of human pancreatic islet genomic data refines regulatory mechanisms at Type 2 Diabetes susceptibility loci
    1
    1. scibot 05 Nov 2018
      RRID:SCR_006525

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    elifesciences.org/articles/31977
  188. www.sciencedirect.com www.sciencedirect.com
    Genomic Analysis of Demographic History and Ecological Niche Modeling in the Endangered Sumatran Rhinoceros Dicerorhinus sumatrensis
    1
    1. scibot 05 Nov 2018
      RRID:SCR_006525

      Curator: @evieth

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    sciencedirect.com/science/article/pii/S0960982217314665
  189. www.sciencedirect.com www.sciencedirect.com
    The Dynamic Landscape of Open Chromatin during Human Cortical Neurogenesis
    1
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  190. www.sciencedirect.com www.sciencedirect.com
    Multiclonal Invasion in Breast Tumors Identified by Topographic Single Cell Sequencing
    1
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    sciencedirect.com/science/article/pii/S0092867417314496
  191. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Microbiome Influences Prenatal and Adult Microglia in a Sex-Specific Manner
    1
    1. scibot 05 Nov 2018
      RRID:SCR_006525

      Curator: @evieth

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    ncbi.nlm.nih.gov/pmc/articles/PMC5786503/
  192. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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      RRID:SCR_006525

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    ncbi.nlm.nih.gov/pmc/articles/PMC5690287/
  193. europepmc.org europepmc.org
    Untitled document
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    europepmc.org/articles/PMC5608512/
  194. www.sciencedirect.com www.sciencedirect.com
    The Stone Age Plague and Its Persistence in Eurasia
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    sciencedirect.com/science/article/pii/S0960982217313283
  195. europepmc.org europepmc.org
    A high-resolution mRNA expression time course of embryonic development in zebrafish.
    1
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    europepmc.org/articles/PMC5690287/
  196. Nov 2017
  197. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Dysregulation of Alternative Poly-adenylation as a Potential Player in Autism Spectrum Disorder
    1
    1. scibot 08 Nov 2017
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  198. www.sciencedirect.com www.sciencedirect.com
    Aldosterone-Sensing Neurons in the NTS Exhibit State-Dependent Pacemaker Activity and Drive Sodium Appetite via Synergy with Angiotensin II Signaling
    1
    1. scibot 08 Nov 2017
      RRID:SCR_006525

      Curator: @Jmenke

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    sciencedirect.com/science/article/pii/S0896627317308541
  199. www.sciencedirect.com www.sciencedirect.com
    MicroRNAs Induce a Permissive Chromatin Environment that Enables Neuronal Subtype-Specific Reprogramming of Adult Human Fibroblasts
    1
    1. scibot 08 Nov 2017
      Picard Tools

      Curator: @Jmenke

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    sciencedirect.com/science/article/pii/S193459091730320X
  200. www.sciencedirect.com www.sciencedirect.com
    Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung
    1
    1. scibot 08 Nov 2017
      Picard Tools

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  201. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
    2
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      RRID:SCR_006525

      Curator: @patriciaelyse_

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    ncbi.nlm.nih.gov/pmc/articles/PMC5570000/
  202. academic.oup.com academic.oup.com
    An expanded mammal mitogenome dataset from Southeast Asia
    1
    1. scibot 08 Nov 2017
      RRID:SCR_006525

      Curator: @patriciaelyse_

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    academic.oup.com/gigascience/article/6/8/1/3958782/An-expanded-mammal-mitogenome-dataset-from
  203. www.sciencedirect.com www.sciencedirect.com
    Antagonistic Activities of Sox2 and Brachyury Control the Fate Choice of Neuro-Mesodermal Progenitors
    1
    1. scibot 08 Nov 2017
      Picard

      Curator: @Jmenke

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  204. www.sciencedirect.com www.sciencedirect.com
    Tumor Interferon Signaling Regulates a Multigenic Resistance Program to Immune Checkpoint Blockade
    1
    1. scibot 08 Nov 2017
      Picard Tools

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    sciencedirect.com/science/article/pii/S009286741631594X
  205. www.sciencedirect.com www.sciencedirect.com
    Functional Selectivity in Cytokine Signaling Revealed Through a Pathogenic EPO Mutation
    1
    1. scibot 08 Nov 2017
      Picard tools

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  206. academic.oup.com academic.oup.com
    Untitled document
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    academic.oup.com/gigascience/article/6/7/1/3867068/Comprehensive-analysis-of-microorganisms
  207. www.sciencedirect.com www.sciencedirect.com
    Muscle Stem Cells Undergo Extensive Clonal Drift during Tissue Growth via Meox1-Mediated Induction of G2 Cell-Cycle Arrest
    1
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      Picard

      Curator: @chewbeccax

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    sciencedirect.com/science/article/pii/S1934590917302291
  208. www.sciencedirect.com www.sciencedirect.com
    Centrosome Amplification Is Sufficient to Promote Spontaneous Tumorigenesis in Mammals
    1
    1. scibot 08 Nov 2017
      Picard

      Curator: @chewbeccax

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    sciencedirect.com/science/article/pii/S1534580716309170
  209. www.sciencedirect.com www.sciencedirect.com
    Common Molecular Subtypes Among Asian Hepatocellular Carcinoma and Cholangiocarcinoma
    1
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      Picard

      Curator: @chewbeccax

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    sciencedirect.com/science/article/pii/S1535610817302052
  210. www.sciencedirect.com www.sciencedirect.com
    Interferon-γ Drives Treg Fragility to Promote Anti-tumor Immunity
    1
    1. scibot 08 Nov 2017
      Picard

      Curator: @Zeljana_Babic

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    sciencedirect.com/science/article/pii/S0092867417305329
  211. www.sciencedirect.com www.sciencedirect.com
    Multiplexed Engineering and Analysis of Combinatorial Enhancer Activity in Single Cells
    1
    1. scibot 08 Nov 2017
      Picard

      Curator: @Zeljana_Babic

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    sciencedirect.com/science/article/pii/S1097276517301740
  212. www.sciencedirect.com www.sciencedirect.com
    Neurogenic Radial Glia-like Cells in Meninges Migrate and Differentiate into Functionally Integrated Neurons in the Neonatal Cortex
    1
    1. scibot 08 Nov 2017
      Picard tools

      Curator: @chewbeccax

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    sciencedirect.com/science/article/pii/S1934590916303952
  213. www.sciencedirect.com www.sciencedirect.com
    Aberrant DNA Methylation in Human iPSCs Associates with MYC-Binding Motifs in a Clone-Specific Manner Independent of Genetics
    1
    1. scibot 08 Nov 2017
      Picard

      Curator: @Zeljana_Babic

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    sciencedirect.com/science/article/pii/S1934590917300814
  214. www.sciencedirect.com www.sciencedirect.com
    Derivation of Pluripotent Stem Cells with In Vivo Embryonic and Extraembryonic Potency
    1
    1. scibot 08 Nov 2017
      Picard

      Curator: @gabimpine

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    sciencedirect.com/science/article/pii/S0092867417301836
  215. www.cell.com www.cell.com
    Mutation of the Human Circadian Clock Gene CRY1 in Familial Delayed Sleep Phase Disorder
    1
    1. scibot 08 Nov 2017
      Picard (version 1.83)

      Curator: @Zeljana_Babic

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    cell.com/action/showMethods
  216. www.sciencedirect.com www.sciencedirect.com
    Mutation of the Human Circadian Clock Gene CRY1 in Familial Delayed Sleep Phase Disorder
    1
    1. scibot 08 Nov 2017
      Picard

      Curator: @gabimpine

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    sciencedirect.com/science/article/pii/S009286741730346X
  217. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Layer-specific chromatin accessibility landscapes reveal regulatory networks in adult mouse visual cortex
    1
    1. scibot 08 Nov 2017
      SCR_006525

      Curator: @kaitlinsung

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    ncbi.nlm.nih.gov/pmc/articles/PMC5325622/