312 Matching Annotations
  1. Feb 2021
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    The corepressors GPS2 and SMRT control enhancer and silencer remodeling via eRNA transcription during inflammatory activation of macrophages
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    sciencedirect.com/science/article/pii/S1097276520309618
  3. elifesciences.org elifesciences.org
    Pancreatic progenitor epigenome maps prioritize type 2 diabetes risk genes with roles in development
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    elifesciences.org/articles/59067
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    The glucocorticoid receptor recruits the COMPASS complex to regulate inflammatory transcription at macrophage enhancers
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    sciencedirect.com/science/article/pii/S2211124721000553
  5. Jan 2021
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    Protocol for assaying chromatin accessibility using ATAC-seq in plants
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    sciencedirect.com/science/article/pii/S2666166720302768
  7. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Re-expression of SMARCA4/BRG1 in small cell carcinoma of ovary, hypercalcemic type (SCCOHT) promotes an epithelial-like gene signature through an AP-1-dependent mechanism
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    ncbi.nlm.nih.gov/pmc/articles/PMC7813545/
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    QUAKING Regulates Microexon Alternative Splicing of the Rho GTPase Pathway and Controls Microglia Homeostasis
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    sciencedirect.com/science/article/pii/S2211124720315497
  9. Dec 2020
  10. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes
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    ncbi.nlm.nih.gov/pmc/articles/PMC7688309/
  11. Oct 2020
  12. elifesciences.org elifesciences.org
    Gli3 utilizes Hand2 to synergistically regulate tissue-specific transcriptional networks
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    elifesciences.org/articles/56450
  13. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Cord blood DNA methylome in newborns later diagnosed with autism spectrum disorder reflects early dysregulation of neurodevelopmental and X-linked genes
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    pubmed.ncbi.nlm.nih.gov/33054850/
  14. Sep 2020
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    Analysis of zebrafish periderm enhancers facilitates identification of a regulatory variant near human KRT8/18
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    ncbi.nlm.nih.gov/pmc/articles/PMC7039683/
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    Early B Cell Factor Activity Controls Developmental and Adaptive Thermogenic Gene Programming in Adipocytes
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    sciencedirect.com/science/article/pii/S2211124720301777
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    Binding of the Treslin-MTBP Complex to Specific Regions of the Human Genome Promotes the Initiation of DNA Replication
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    pubmed.ncbi.nlm.nih.gov/32966791/
  18. elifesciences.org elifesciences.org
    Amplification of a broad transcriptional program by a common factor triggers the meiotic cell cycle in mice
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    elifesciences.org/articles/43738
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    Genetic Variation in Type 1 Diabetes Reconfigures the 3D Chromatin Organization of T Cells and Alters Gene Expression
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    sciencedirect.com/science/article/pii/S1074761320300303
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    NuRD subunit CHD4 regulates super-enhancer accessibility in rhabdomyosarcoma and represents a general tumor dependency
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    elifesciences.org/articles/54993
  21. elifesciences.org elifesciences.org
    The histone modification reader ZCWPW1 links histone methylation to PRDM9-induced double-strand break repair
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    elifesciences.org/articles/53459
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    Aberrant Expression of a Non-muscle RBFOX2 Isoform Triggers Cardiac Conduction Defects in Myotonic Dystrophy
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    sciencedirect.com/science/article/pii/S1534580720300691
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    C/EBPα and GATA-2 Mutations Induce Bilineage Acute Erythroid Leukemia through Transformation of a Neomorphic Neutrophil-Erythroid Progenitor
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    sciencedirect.com/science/article/pii/S1535610820301628
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The testis protein ZNF165 is a SMAD3 cofactor that coordinates oncogenic TGFβ signaling in triple-negative breast cancer
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    ncbi.nlm.nih.gov/pmc/articles/PMC7302877/
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    Genomic Rewiring of SOX2 Chromatin Interaction Network during Differentiation of ESCs to Postmitotic Neurons
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    sciencedirect.com/science/article/pii/S2405471220301885
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    Super-Enhancer Redistribution as a Mechanism of Broad Gene Dysregulation in Repeatedly Drug-Treated Cancer Cells
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    sciencedirect.com/science/article/pii/S2211124720304320
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    Cell Type-Specific Intralocus Interactions Reveal Oligodendrocyte Mechanisms in MS
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    sciencedirect.com/science/article/pii/S0092867420302646
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    Genome-Scale CRISPR Screening in Human Intestinal Organoids Identifies Drivers of TGF-β Resistance
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    sciencedirect.com/science/article/pii/S1934590920300606
  29. elifesciences.org elifesciences.org
    DAZL mediates a broad translational program regulating expansion and differentiation of spermatogonial progenitors
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    elifesciences.org/articles/56523
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    Failed Apoptosis Enhances Melanoma Cancer Cell Aggressiveness
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    sciencedirect.com/science/article/pii/S2211124720307117
  31. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Sphingosine 1-phosphate-regulated transcriptomes in heterogenous arterial and lymphatic endothelium of the aorta
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    ncbi.nlm.nih.gov/pmc/articles/PMC7054001/
  32. elifesciences.org elifesciences.org
    A human ESC-based screen identifies a role for the translated lncRNA LINC00261 in pancreatic endocrine differentiation
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    elifesciences.org/articles/58659
  33. Jan 2020
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    RNA Interactions Are Essential for CTCF-Mediated Genome Organization
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    sciencedirect.com/science/article/pii/S1097276519306549
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    The Ovulatory Signal Precipitates LRH-1 Transcriptional Switching Mediated by Differential Chromatin Accessibility
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    sciencedirect.com/science/article/pii/S2211124719310046
  36. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle
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    ncbi.nlm.nih.gov/pmc/articles/PMC6890464/
  37. elifesciences.org elifesciences.org
    Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation
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    elifesciences.org/articles/47891
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    PRDM16 Maintains Homeostasis of the Intestinal Epithelium by Controlling Region-Specific Metabolism
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    sciencedirect.com/science/article/pii/S1934590919303844
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    Identification and Analyses of Extra-Cranial and Cranial Rhabdoid Tumor Molecular Subgroups Reveal Tumors with Cytotoxic T Cell Infiltration
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    sciencedirect.com/science/article/pii/S2211124719313130
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    Recurrent SMARCB1 Mutations Reveal a Nucleosome Acidic Patch Interaction Site That Potentiates mSWI/SNF Complex Chromatin Remodeling
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    sciencedirect.com/science/article/pii/S0092867419312218
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    Quantification of Differential Transcription Factor Activity and Multiomics-Based Classification into Activators and Repressors: diffTF
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    sciencedirect.com/science/article/pii/S2211124719314391
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    Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation
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    sciencedirect.com/science/article/pii/S2211124719306242
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    The Bone Marrow Protects and Optimizes Immunological Memory during Dietary Restriction
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    Meta-analysis of Chromatin Programming by Steroid Receptors
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    sciencedirect.com/science/article/pii/S2211124719310794
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    A Unique Epigenomic Landscape Defines Human Erythropoiesis
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    sciencedirect.com/science/article/pii/S2211124719310538
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    A Single-Cell Transcriptomic Atlas of Human Neocortical Development during Mid-gestation
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    sciencedirect.com/science/article/pii/S0896627319305616
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    FOXA2 Is Required for Enhancer Priming during Pancreatic Differentiation
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    sciencedirect.com/science/article/pii/S2211124719308009
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    Oncogenic Notch Promotes Long-Range Regulatory Interactions within Hyperconnected 3D Cliques
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    sciencedirect.com/science/article/pii/S1097276519300061
  49. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    ncbi.nlm.nih.gov/pmc/articles/PMC6336405/
  50. www.nature.com www.nature.com
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    nature.com/articles/s41586-018-0845-0
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    sciencedirect.com/science/article/pii/S2211124719304942
  52. academic.oup.com academic.oup.com
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    academic.oup.com/endo/article/160/5/1044/5371332
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    ncbi.nlm.nih.gov/pmc/articles/PMC6392498/
  54. Nov 2018
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    The SS18-SSX Oncoprotein Hijacks KDM2B-PRC1.1 to Drive Synovial Sarcoma
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    sciencedirect.com/science/article/pii/S1535610818300187
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    LKB1, Salt-Inducible Kinases, and MEF2C Are Linked Dependencies in Acute Myeloid Leukemia
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    sciencedirect.com/science/article/pii/S1097276518301096
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    Developmental History Provides a Roadmap for the Emergence of Tumor Plasticity
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    sciencedirect.com/science/article/pii/S1534580718301564
  58. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Stage-Specific Transcription Factors Drive Astrogliogenesis by Remodeling Gene Regulatory Landscapes
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    ncbi.nlm.nih.gov/pmc/articles/PMC6179960/
  59. www.sciencedirect.com www.sciencedirect.com
    The Nuclear Receptor PPARγ Controls Progressive Macrophage Polarization as a Ligand-Insensitive Epigenomic Ratchet of Transcriptional Memory
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    sciencedirect.com/science/article/pii/S1074761318303960
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    Decoding Transcriptome Dynamics of Genome-Encoded Polyadenylation and Autoregulation with Small-Molecule Modulators of Alternative Polyadenylation
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    sciencedirect.com/science/article/pii/S2451945618303015
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    The Itaconate Pathway Is a Central Regulatory Node Linking Innate Immune Tolerance and Trained Immunity
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    sciencedirect.com/science/article/pii/S1550413118305680
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    ZFX Mediates Non-canonical Oncogenic Functions of the Androgen Receptor Splice Variant 7 in Castrate-Resistant Prostate Cancer
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    sciencedirect.com/science/article/pii/S1097276518306890
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    Prospective Isolation and Characterization of Genetically and Functionally Distinct AML Subclones
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    Single Cell and Open Chromatin Analysis Reveals Molecular Origin of Epidermal Cells of the Skin
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    Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells
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    ncbi.nlm.nih.gov/pmc/articles/PMC6126923/
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    Time-Restricted Feeding Prevents Obesity and Metabolic Syndrome in Mice Lacking a Circadian Clock
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    Epigenetic and Transcriptomic Profiling of Mammary Gland Development and Tumor Models Disclose Regulators of Cell State Plasticity
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    Transcription Elongation Can Affect Genome 3D Structure
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    Dismissal of RNA Polymerase II Underlies a Large Ligand-Induced Enhancer Decommissioning Program
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    Cooperative Metabolic Adaptations in the Host Can Favor Asymptomatic Infection and Select for Attenuated Virulence in an Enteric Pathogen
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  71. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Active N6-Methyladenine Demethylation by DMAD Regulates Gene Expression by Coordinating with Polycomb Protein in Neurons
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    The Mitochondrial-Encoded Peptide MOTS-c Translocates to the Nucleus to Regulate Nuclear Gene Expression in Response to Metabolic Stress
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    Iron Drives T Helper Cell Pathogenicity by Promoting RNA-Binding Protein PCBP1-Mediated Proinflammatory Cytokine Production
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    The Dfm1 Derlin Is Required for ERAD Retrotranslocation of Integral Membrane Proteins
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    Dual Requirement of CHD8 for Chromatin Landscape Establishment and Histone Methyltransferase Recruitment to Promote CNS Myelination and Repair
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    Arabidopsis Serrate Coordinates Histone Methyltransferases ATXR5/6 and RNA Processing Factor RDR6 to Regulate Transposon Expression
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    JMJD6 Licenses ERα-Dependent Enhancer and Coding Gene Activation by Modulating the Recruitment of the CARM1/MED12 Co-activator Complex
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    sciencedirect.com/science/article/pii/S1097276518301874
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    Transcriptome Engineering with RNA-Targeting Type VI-D CRISPR Effectors
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    mTORC1 Is Transiently Reactivated in Injured Nerves to Promote c-Jun Elevation and Schwann Cell Dedifferentiation
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    jneurosci.org/content/38/20/4811
  80. elifesciences.org elifesciences.org
    Epigenetic drift of H3K27me3 in aging links glycolysis to healthy longevity in Drosophila
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    elifesciences.org/articles/35368
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    BRG1 governs glucocorticoid receptor interactions with chromatin and pioneer factors across the genome
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    elifesciences.org/articles/35073
  83. www.nature.com www.nature.com
    Re-evaluating microglia expression profiles using RiboTag and cell isolation strategies
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    nature.com/articles/s41590-018-0110-6
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    Lineage-Determining Transcription Factor TCF-1 Initiates the Epigenetic Identity of T Cells
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    The Adenovirus E1A C Terminus Suppresses a Delayed Antiviral Response and Modulates RAS Signaling
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    sciencedirect.com/science/article/pii/S1931312817305024
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    BCG Educates Hematopoietic Stem Cells to Generate Protective Innate Immunity against Tuberculosis
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    sciencedirect.com/science/article/pii/S0092867417315118
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    The RNA-Binding Protein NONO Coordinates Hepatic Adaptation to Feeding
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    sciencedirect.com/science/article/pii/S1550413117307234
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    Microbiome Influences Prenatal and Adult Microglia in a Sex-Specific Manner
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    ncbi.nlm.nih.gov/pmc/articles/PMC5786503/
  89. europepmc.org europepmc.org
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  90. Nov 2017
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    A chemical screen in zebrafish embryonic cells establishes that Akt activation is required for neural crest development
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    ncbi.nlm.nih.gov/pmc/articles/PMC5599238/
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    A tissue-specific, Gata6-driven transcriptional program instructs remodeling of the mature arterial tree.
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    europepmc.org/articles/PMC5630260/
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    Non-coding Transcription Instructs Chromatin Folding and Compartmentalization to Dictate Enhancer-Promoter Communication and T Cell Fate
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    Adaptive Chromatin Remodeling Drives Glioblastoma Stem Cell Plasticity and Drug Tolerance
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    The Short Isoform of BRD4 Promotes HIV-1 Latency by Engaging Repressive SWI/SNF Chromatin-Remodeling Complexes
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    ERK-Induced Activation of TCF Family of SRF Cofactors Initiates a Chromatin Modification Cascade Associated with Transcription
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    Interferon-γ Represses M2 Gene Expression in Human Macrophages by Disassembling Enhancers Bound by the Transcription Factor MAF
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