439 Matching Annotations
  1. Dec 2021
  2. academic.oup.com academic.oup.com
    A high-resolution genome of an euryhaline and eurythermal rhinogoby (Rhinogobius similis Gill 1895)
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    1. scibot 01 Dec 2021
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      DOI: 10.1093/g3journal/jkab395

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    academic.oup.com/g3journal/advance-article/doi/10.1093/g3journal/jkab395/6430980
  3. www.sciencedirect.com www.sciencedirect.com
    Pre-existing chromatin accessibility and gene expression differences among naive CD4+ T cells influence effector potential
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    1. scibot 01 Dec 2021
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      DOI: 10.1016/j.celrep.2021.110064

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    sciencedirect.com/science/article/pii/S2211124721015503
  4. Nov 2021
  5. www.sciencedirect.com www.sciencedirect.com
    Autism-related dietary preferences mediate autism-gut microbiome associations
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    1. scibot 12 Nov 2021
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      DOI: 10.1016/j.cell.2021.10.015

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    sciencedirect.com/science/article/pii/S0092867421012319
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    Kr-h1 maintains distinct caste-specific neurotranscriptomes in response to socially regulated hormones
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    1. scibot 05 Nov 2021
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      DOI: 10.1016/j.cell.2021.10.006

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    sciencedirect.com/science/article/pii/S0092867421011806
  7. Oct 2021
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    Anaeramoebae are a divergent lineage of eukaryotes that shed light on the transition from anaerobic mitochondria to hydrogenosomes
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    1. scibot 28 Oct 2021
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      DOI: 10.1016/j.cub.2021.10.010

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    sciencedirect.com/science/article/pii/S0960982221013646
  9. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-level genome assembly for the eastern fence lizard (Sceloporus undulatus), a reptile model for physiological and evolutionary ecology
    1
    1. scibot 06 Oct 2021
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      DOI: 10.1093/gigascience/giab066

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    ncbi.nlm.nih.gov/pmc/articles/PMC8486681/
  10. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    SCIGA: Software for large-scale, single-cell immunoglobulin repertoire analysis
    1
    1. scibot 02 Oct 2021
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      DOI: 10.1093/gigascience/giab050

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    ncbi.nlm.nih.gov/pmc/articles/PMC8478610/
  11. Sep 2021
  12. www.sciencedirect.com www.sciencedirect.com
    The prolyl-isomerase PIN1 is essential for nuclear Lamin-B structure and function and protects heterochromatin under mechanical stress
    1
    1. scibot 16 Sep 2021
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      DOI: 10.1016/j.celrep.2021.109694

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    sciencedirect.com/science/article/pii/S2211124721011414
  13. www.sciencedirect.com www.sciencedirect.com
    Multiplatform discovery and regulatory function analysis of structural variations in non-small cell lung carcinoma
    1
    1. scibot 08 Sep 2021
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      DOI: 10.1016/j.celrep.2021.109660

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    sciencedirect.com/science/article/pii/S2211124721011049
  14. Aug 2021
  15. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Nascent transcript and single-cell RNA-seq analysis defines the mechanism of action of the LSD1 inhibitor INCB059872 in myeloid leukemia
    1
    1. scibot 21 Aug 2021
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      DOI: 10.1016/j.gene.2020.144758

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    ncbi.nlm.nih.gov/pmc/articles/PMC7401316/
  16. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    1. scibot 13 Aug 2021
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      DOI: 10.1093/gigascience/giz020

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    ncbi.nlm.nih.gov/pmc/articles/PMC6446249/
  17. academic.oup.com academic.oup.com
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    1. scibot 13 Aug 2021
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      DOI: 10.1093/gigascience/giz023

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    academic.oup.com/gigascience/article/8/4/giz023/5429687
  18. academic.oup.com academic.oup.com
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    1. scibot 13 Aug 2021
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      DOI: 10.1093/gigascience/giz027

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    academic.oup.com/gigascience/article/8/4/giz027/5426569
  19. academic.oup.com academic.oup.com
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    1. scibot 11 Aug 2021
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      DOI: 10.1093/gigascience/giy068

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    academic.oup.com/gigascience/article/7/7/giy068/5040257
  20. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    1. scibot 10 Aug 2021
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      DOI: 10.1093/gigascience/giy115

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    ncbi.nlm.nih.gov/pmc/articles/PMC6204424/
  21. onlinelibrary.wiley.com onlinelibrary.wiley.com
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    1. scibot 10 Aug 2021
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      DOI: 10.1002/jmor.20894

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    onlinelibrary.wiley.com/doi/full/10.1002/jmor.20894
  22. www.sciencedirect.com www.sciencedirect.com
    Lymphocyte-Specific Chromatin Accessibility Pre-determines Glucocorticoid Resistance in Acute Lymphoblastic Leukemia
    1
    1. scibot 10 Aug 2021
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      DOI: 10.1016/j.ccell.2018.11.002

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    sciencedirect.com/science/article/pii/S1535610818305233
  23. academic.oup.com academic.oup.com
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    1. scibot 08 Aug 2021
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      DOI: 10.1093/gigascience/giy115

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    academic.oup.com/gigascience/article/7/10/giy115/5092772
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    1. scibot 08 Aug 2021
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      DOI: 10.7554/eLife.34364

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    ncbi.nlm.nih.gov/pmc/articles/PMC6175580/
  25. www.sciencedirect.com www.sciencedirect.com
    Dysregulated oxalate metabolism is a driver and therapeutic target in atherosclerosis
    1
    1. scibot 07 Aug 2021
      RRID:SCR_011848

      DOI: 10.1016/j.celrep.2021.109420

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    sciencedirect.com/science/article/pii/S2211124721008330
  26. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    1. scibot 07 Aug 2021
      RRID:SCR_011848

      DOI: 10.1093/gigascience/gix134

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    ncbi.nlm.nih.gov/pmc/articles/PMC5890452/
  27. elifesciences.org elifesciences.org
    Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexity
    1
    1. scibot 07 Aug 2021
      SCR_011848

      DOI: 10.7554/eLife.22194

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    elifesciences.org/articles/22194v2
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Studying immunotherapy resistance in a melanoma autologous humanized mouse xenograft.
    1
    1. scibot 06 Aug 2021
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      DOI: 10.1158/1541-7786.MCR-20-0686

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    ncbi.nlm.nih.gov/pmc/articles/PMC7864867/
  29. onlinelibrary.wiley.com onlinelibrary.wiley.com
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    1. scibot 04 Aug 2021
      RRID:OMICS_01097

      DOI: 10.1002/cne.24551

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    onlinelibrary.wiley.com/doi/full/10.1002/cne.24551
  30. academic.oup.com academic.oup.com
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      DOI: 10.1093/gigascience/gix134

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    academic.oup.com/gigascience/article/7/4/gix134/4782225
  31. onlinelibrary.wiley.com onlinelibrary.wiley.com
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      DOI: 10.1002/cne.24282

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    onlinelibrary.wiley.com/doi/abs/10.1002/cne.24282
  32. academic.oup.com academic.oup.com
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      DOI: 10.1093/gigascience/giz033

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    academic.oup.com/gigascience/article/8/4/giz033/5429686
  33. onlinelibrary.wiley.com onlinelibrary.wiley.com
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    1. scibot 03 Aug 2021
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      DOI: 10.1002/cne.23989

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    onlinelibrary.wiley.com/doi/full/10.1002/cne.23989
  34. www.sciencedirect.com www.sciencedirect.com
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    1. scibot 02 Aug 2021
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      DOI: 10.1016/j.cub.2018.11.055

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    sciencedirect.com/science/article/pii/S0960982218315549
  35. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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      DOI: 10.1093/gigascience/gix137

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    ncbi.nlm.nih.gov/pmc/articles/PMC5848817/
  36. www.sciencedirect.com www.sciencedirect.com
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      DOI: 10.1016/j.cell.2018.11.014

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    sciencedirect.com/science/article/pii/S009286741831506X
  37. Jul 2021
  38. www.nature.com www.nature.com
    A kinase-independent role for CDK8 in BCR-ABL1 + leukemia
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    1. scibot 31 Jul 2021
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      DOI: 10.1038/s41467-019-12656-x

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    nature.com/articles/s41467-019-12656-x
  39. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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      DOI: 10.1093/gigascience/gix128

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    ncbi.nlm.nih.gov/pmc/articles/PMC5836269/
  40. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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      DOI: 10.1093/gigascience/giz026

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    ncbi.nlm.nih.gov/pmc/articles/PMC6446218/
  41. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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      DOI: 10.1093/gigascience/giz023

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    ncbi.nlm.nih.gov/pmc/articles/PMC6451197/
  42. elifesciences.org elifesciences.org
    A scalable platform for the development of cell-type-specific viral drivers
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    1. scibot 30 Jul 2021
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      DOI: 10.7554/eLife.48089

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    elifesciences.org/articles/48089
  43. academic.oup.com academic.oup.com
    rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data
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    1. scibot 30 Jul 2021
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      DOI: 10.1093/gigascience/giz100

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    academic.oup.com/gigascience/article/8/9/giz100/5559527
  44. link.springer.com link.springer.com
    Cold-induced lipid dynamics and transcriptional programs in white adipose tissue
    1
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      DOI: 10.1186/s12915-019-0693-x

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    link.springer.com/article/10.1186/s12915-019-0693-x
  45. academic.oup.com academic.oup.com
    Hybrid de novo genome assembly of Chinese chestnut ( Castanea mollissima )
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    1. scibot 30 Jul 2021
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      DOI: 10.1093/gigascience/giz112

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    academic.oup.com/gigascience/article/8/9/giz112/5568369
  46. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Single‐cell RNAseq characterization of anatomically‐identified OLM interneurons in different transgenic mouse lines
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    1. scibot 30 Jul 2021
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      DOI: 10.1111/ejn.14549

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    onlinelibrary.wiley.com/doi/full/10.1111/ejn.14549
  47. www.frontiersin.org www.frontiersin.org
    The Inducible Response of the Nematode Caenorhabditis elegans to Members of Its Natural Microbiota Across Development and Adult Life
    1
    1. scibot 29 Jul 2021
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      DOI: 10.3389/fmicb.2019.01793

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    frontiersin.org/articles/10.3389/fmicb.2019.01793/full
  48. www.nature.com www.nature.com
    Intracellular Zn 2+ transients modulate global gene expression in dissociated rat hippocampal neurons
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      DOI: 10.1038/s41598-019-45844-2

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    nature.com/articles/s41598-019-45844-2
  49. academic.oup.com academic.oup.com
    Identification of Betamethasone-Regulated Target Genes and Cell Pathways in Fetal Rat Lung Mesenchymal Fibroblasts
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    Genomic Analysis of Demographic History and Ecological Niche Modeling in the Endangered Sumatran Rhinoceros Dicerorhinus sumatrensis
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    PI3K Inhibition Activates SGK1 via a Feedback Loop to Promote Chromatin-Based Regulation of ER-Dependent Gene Expression
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    An Interleukin-23-Interleukin-22 Axis Regulates Intestinal Microbial Homeostasis to Protect from Diet-Induced Atherosclerosis
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    Chromosome-level genome assembly of the sweet potato weevil, Cylas formicarius (Fabricius) (Coleoptera: Brentidae) and functional characteristics of CforOBP4-6
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  65. Jun 2021
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    A drastic shift in the energetic landscape of toothed whale sperm cells
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    Myoglobin primary structure reveals multiple convergent transitions to semi-aquatic life in the world's smallest mammalian divers
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    Protocol for using heterologous spike-ins to normalize for technical variation in chromatin immunoprecipitation
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    Clinical responsiveness to All-trans Retinoic Acid is potentiated by LSD1 inhibition and associated with a quiescent transcriptome in myeloid malignancies
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    An intrinsically disordered region-mediated confinement state contributes to the dynamics and function of transcription factors
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    Repetitive Elements Trigger RIG-I-like Receptor Signaling that Regulates the Emergence of Hematopoietic Stem and Progenitor Cells
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    New Lineage of Microbial Predators Adds Complexity to Reconstructing the Evolutionary Origin of Animals
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    Shedding Light on the Dynamic Role of the “Target of Rapamycin” Kinase in the Fast-Growing C4 Species Setaria viridis, a Suitable Model for Biomass Crops
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    Immunogenomic Landscape of Hematological Malignancies
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    Genome sequence and genetic diversity analysis of an under-domesticated orphan crop, white fonio (Digitaria exilis)
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    Comparative Genomics of Mycobacterium avium Subspecies Paratuberculosis Sheep Strains
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    Post-transcriptional regulation of antiviral gene expression by N6-methyladenosine
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    Proteogenomics of glioblastoma associates molecular patterns with survival
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    Distinct Transcriptional Responses across Tissue-Resident Macrophages to Short-Term and Long-Term Metabolic Challenge
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    Direct reprogramming of oligodendrocyte precursor cells into GABAergic inhibitory neurons by a single homeodomain transcription factor Dlx2
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  98. Dec 2020
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    Circadian VIPergic Neurons of the Suprachiasmatic Nuclei Sculpt the Sleep-Wake Cycle
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    Transformation of TNT, 2,4-DNT, and PETN by Raoultella planticola M30b and Rhizobium radiobacter M109 and exploration of the associated enzymes
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  101. Nov 2020
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    Gbx2 Identifies Two Amacrine Cell Subtypes with Distinct Molecular, Morphological, and Physiological Properties
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  103. Oct 2020
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    Human Pluripotent Stem Cell-Derived Neural Cells and Brain Organoids Reveal SARS-CoV-2 Neurotropism Predominates in Choroid Plexus Epithelium
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  105. Sep 2020
  106. elifesciences.org elifesciences.org
    Temporal network analysis identifies early physiological and transcriptomic indicators of mild drought in Brassica rapa
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    Senescence-Induced Vascular Remodeling Creates Therapeutic Vulnerabilities in Pancreas Cancer
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    Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods
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    Enhanced Detection of DNA Viruses in the Cerebrospinal Fluid of Encephalitis Patients Using Metagenomic Next-Generation Sequencing
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    Biomarkers of Broccoli Consumption: Implications for Glutathione Metabolism and Liver Health
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    FASN-Dependent Lipid Metabolism Links Neurogenic Stem/Progenitor Cell Activity to Learning and Memory Deficits
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    De novo Assembly of Transcriptomes From a B73 Maize Line Introgressed With a QTL for Resistance to Gray Leaf Spot Disease Reveals a Candidate Allele of a Lectin Receptor-Like Kinase
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    Full genome survey and dynamics of gene expression in the greater amberjack Seriola dumerili
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    OsNSUN2-Mediated 5-Methylcytosine mRNA Modification Enhances Rice Adaptation to High Temperature
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    Postprandial Hypoglycemia in Patients after Gastric Bypass Surgery Is Mediated by Glucose-Induced IL-1β
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    A moth odorant receptor highly expressed in the ovipositor is involved in detecting host-plant volatiles
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    Aberrant Expression of a Non-muscle RBFOX2 Isoform Triggers Cardiac Conduction Defects in Myotonic Dystrophy
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    Pathogenic Tau Causes a Toxic Depletion of Nuclear Calcium
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    Islet O-GlcNAcylation Is Required for Lipid Potentiation of Insulin Secretion through SERCA2
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    Transcriptional Correlates of Tolerance and Lethality in Mice Predict Ebola Virus Disease Patient Outcomes
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    Genomic Rewiring of SOX2 Chromatin Interaction Network during Differentiation of ESCs to Postmitotic Neurons
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    Chromosome‐level genome assembly of a cyprinid fish Onychostoma macrolepis by integration of Nanopore Sequencing, Bionano and Hi‐C technology
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    Combined Targeting of Estrogen Receptor Alpha and Exportin 1 in Metastatic Breast Cancers
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  137. Jan 2020
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    The draft genome sequence of the spider Dysdera silvatica (Araneae, Dysderidae): A valuable resource for functional and evolutionary genomic studies in chelicerates
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    Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation
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    Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease
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    Combinatorial action of NF–Y and TALE at embryonic enhancers defines distinct gene expression programs during zygotic genome activation in zebrafish
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    Lmx1b is required at multiple stages to build expansive serotonergic axon architectures
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    Genome-wide analysis of the H3K27me3 epigenome and transcriptome in Brassica rapa
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    Recurrent SMARCB1 Mutations Reveal a Nucleosome Acidic Patch Interaction Site That Potentiates mSWI/SNF Complex Chromatin Remodeling
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    Single-Cell RNA-Seq Reveals Developmental Origins and Ontogenetic Stability of Neurexin Alternative Splicing Profiles
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    Comparison of single-nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga toxin–producing Escherichia coli
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    Quantification of Differential Transcription Factor Activity and Multiomics-Based Classification into Activators and Repressors: diffTF
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    Genome-Edited Triple-Recessive Mutation Alters Seed Dormancy in Wheat
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    m6A mRNA Methylation Is Essential for Oligodendrocyte Maturation and CNS Myelination
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    A Unique Epigenomic Landscape Defines Human Erythropoiesis
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    FOXA2 Is Required for Enhancer Priming during Pancreatic Differentiation
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    Activation Dynamics and Immunoglobulin Evolution of Pre-existing and Newly Generated Human Memory B cell Responses to Influenza Hemagglutinin
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    Common workflow language (CWL)-based software pipeline for de novo genome assembly from long- and short-read data
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    A Cross-Species Analysis Reveals a General Role for Piezo2 in Mechanosensory Specialization of Trigeminal Ganglia from Tactile Specialist Birds
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    Distinct Immune Cell Populations Define Response to Anti-PD-1 Monotherapy and Anti-PD-1/Anti-CTLA-4 Combined Therapy
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    Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry
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    The genomic basis for colonizing the freezing Southern Ocean revealed by Antarctic toothfish and Patagonian robalo genomes
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    Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad taxonomic scale
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    Intestinal Bile Acids Induce a Morphotype Switch in Vancomycin-Resistant Enterococcus that Facilitates Intestinal Colonization
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    Chromosome-scale genome assembly of kiwifruit Actinidia eriantha with single-molecule sequencing and chromatin interaction mapping
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      DOI: 10.1093/gigascience/giz020

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  181. Nov 2018
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    Identification of piRNA Binding Sites Reveals the Argonaute Regulatory Landscape of the C. elegans Germline
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    Targeting Processive Transcription Elongation via SEC Disruption for MYC-Induced Cancer Therapy
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  184. onlinelibrary.wiley.com onlinelibrary.wiley.com
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    Genome-wide Identification of Structure-Forming Repeats as Principal Sites of Fork Collapse upon ATR Inhibition
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    Suppression of Plant Immunity by Fungal Chitinase-like Effectors
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    Differential m6A, m6Am, and m1A Demethylation Mediated by FTO in the Cell Nucleus and Cytoplasm
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    Antibodies Set Boundaries Limiting Microbial Metabolite Penetration and the Resultant Mammalian Host Response
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    Dppa2/4 Facilitate Epigenetic Remodeling during Reprogramming to Pluripotency
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    Dissecting the Functional Consequences of De Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology
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    A Novel Eukaryotic Denitrification Pathway in Foraminifera
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    Decoupling Yeast Cell Division and Stress Defense Implicates mRNA Repression in Translational Reallocation during Stress
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    Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data
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    Id1 Ablation Protects Hematopoietic Stem Cells from Stress-Induced Exhaustion and Aging
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    Global DNA Compaction in Stationary-Phase Bacteria Does Not Affect Transcription
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    EZH2-Mediated Primary Cilium Deconstruction Drives Metastatic Melanoma Formation
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  204. elifesciences.org elifesciences.org
    TALE factors use two distinct functional modes to control an essential zebrafish gene expression program
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    AMPK/FIS1-Mediated Mitophagy Is Required for Self-Renewal of Human AML Stem Cells
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    Social interaction-induced activation of RNA splicing in the amygdala of microbiome-deficient mice
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    Isolation of primitive mouse extraembryonic endoderm (pXEN) stem cell lines
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    Whole-Genome De Novo sequencing reveals unique genes that contributed to the adaptive evolution of the mikado pheasant
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    Dissecting the Causal Mechanism of X-Linked Dystonia-Parkinsonism by Integrating Genome and Transcriptome Assembly
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    Homoeolog-specific activation of genes for heat acclimation in the allopolyploid grass Brachypodium hybridum
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    Extremely Divergent Haplotypes in Two Toxin Gene Complexes Encode Alternative Venom Types within Rattlesnake Species
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