439 Matching Annotations
  1. Nov 2024
  2. 52.53.155.43 52.53.155.43
    can-24-2248-html.html
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    1. scibot 08 Nov 2024
      RRID:SCR_011848

      DOI: 10.1158/0008-5472.can-24-2248

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    52.53.155.43/cb43348561561308018a10a52d14c612773d9356/can-24-2248-html.html
  3. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Building a community-driven bioinformatics platform to facilitate Cannabis sativa multi-omics research
    1
    1. scibot 07 Nov 2024
      RRID:SCR_011848

      DOI: 10.46471/gigabyte.137

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    pmc.ncbi.nlm.nih.gov/articles/PMC11515022/
  4. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    CannSeek? Yes we Can! An open-source single nucleotide polymorphism database and analysis portal for Cannabis sativa
    1
    1. scibot 07 Nov 2024
      RRID:SCR_011848

      DOI: 10.46471/gigabyte.135

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    pmc.ncbi.nlm.nih.gov/articles/PMC11480739/
  5. 52.53.155.43 52.53.155.43
    can-24-0886-html.html
    1
    1. scibot 07 Nov 2024
      RRID:SCR_011848

      DOI: 10.1158/0008-5472.can-24-0886

      Resource: Trimmomatic (RRID:SCR_011848)

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    52.53.155.43/656f4a916577efff373ec46750afc04546654778/can-24-0886-html.html
  6. Oct 2024
  7. www.sciencedirect.com www.sciencedirect.com
    HOXDeRNA activates a cancerous transcription program and super enhancers via genome-wide binding
    1
    1. scibot 09 Oct 2024
      RRID:SCR_011848

      DOI: 10.1016/j.molcel.2024.09.018

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    sciencedirect.com/science/article/pii/S1097276524007755
  8. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Quiescence and aging of melanocyte stem cells and a novel association with PD-L1
    1
    1. scibot 05 Oct 2024
      RRID:SCR_011848

      DOI: 10.1016/j.isci.2024.110908

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    ncbi.nlm.nih.gov/pmc/articles/PMC11440800/
  9. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Clinical value of liquid biopsy in FGFR2 fusion-positive cholangiocarcinoma patients during targeted therapy
    1
    1. scibot 04 Oct 2024
      RRID:SCR_011848

      DOI: 10.1158/1078-0432.CCR-23-3780

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    ncbi.nlm.nih.gov/pmc/articles/PMC11443220/
  10. Sep 2024
  11. www.biorxiv.org www.biorxiv.org
    Multidirectional effect of low-intensity electrical myostimulation on gene expression and phenotype in thigh and calf muscles after one week of disuse
    1
    1. scibot 28 Sep 2024
      RRID:SCR_011848

      DOI: 10.1101/2024.09.18.613609

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    biorxiv.org/content/10.1101/2024.09.18.613609v1
  12. www.sciencedirect.com www.sciencedirect.com
    EDC-3 and EDC-4 regulate embryonic mRNA clearance and biomolecular condensate specialization
    1
    1. scibot 27 Sep 2024
      RRID:SCR_011848

      DOI: 10.1016/j.celrep.2024.114781

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    sciencedirect.com/science/article/pii/S221112472401132X
  13. www.sciencedirect.com www.sciencedirect.com
    Genomic surveillance as a scalable framework for precision phage therapy against antibiotic-resistant pathogens
    1
    1. scibot 27 Sep 2024
      RRID:SCR_011848

      DOI: 10.1016/j.cell.2024.09.009

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    sciencedirect.com/science/article/pii/S0092867424010274
  14. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A reference genome, mitochondrial genome and associated transcriptomes for the critically endangered swift parrot ( Lathamus discolor)
    1
    1. scibot 25 Sep 2024
      RRID:SCR_011848

      DOI: 10.12688/f1000research.144352.2

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    ncbi.nlm.nih.gov/pmc/articles/PMC11411239/
  15. www.sciencedirect.com www.sciencedirect.com
    Exon Skipping-based Subtyping of Colorectal Cancers
    1
    1. scibot 25 Sep 2024
      RRID:SCR_011848

      DOI: 10.1053/j.gastro.2024.08.016

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    sciencedirect.com/science/article/pii/S0016508524053575
  16. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Epitranscriptomic m6A Regulation of Axon Regeneration in the Adult Mammalian Nervous System
    1
    1. scibot 25 Sep 2024
      RRID:SCR_011848

      DOI: 10.1016/j.neuron.2017.12.036

      Resource: Trimmomatic (RRID:SCR_011848)

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    ncbi.nlm.nih.gov/pmc/articles/PMC5777326/
  17. www.biorxiv.org www.biorxiv.org
    Sex-specific chemosensory gene expression in the whitelined sphinx moth (Lepidoptera: Hyles lineata) suggests a role for odorant-binding proteins in host plant choice
    1
    1. scibot 15 Sep 2024
      RRID:SCR_011848

      DOI: 10.1101/2024.09.04.611314

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    biorxiv.org/content/10.1101/2024.09.04.611314v1
  18. febs.onlinelibrary.wiley.com febs.onlinelibrary.wiley.com
    FEBS Press
    1
    1. scibot 15 Sep 2024
      RRID:SCR_011848

      DOI: 10.1002/1878-0261.13725

      Resource: Trimmomatic (RRID:SCR_011848)

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    febs.onlinelibrary.wiley.com/doi/10.1002/1878-0261.13725
  19. Aug 2024
  20. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Characterizing Relationships between T-cell Inflammation and Outcomes in Patients with High-Risk Neuroblastoma According to Mesenchymal and Adrenergic Signatures
    1
    1. scibot 30 Aug 2024
      RRID:SCR_011848

      DOI: 10.1158/2767-9764.CRC-24-0214

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    ncbi.nlm.nih.gov/pmc/articles/PMC11350481/
  21. www.sciencedirect.com www.sciencedirect.com
    Epithelial organoid supports resident memory CD8 T cell differentiation
    1
    1. scibot 22 Aug 2024
      RRID:SCR_011848

      DOI: 10.1016/j.celrep.2024.114621

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    sciencedirect.com/science/article/pii/S2211124724009719
  22. www.sciencedirect.com www.sciencedirect.com
    Camu-camu decreases hepatic steatosis and liver injury markers in overweight, hypertriglyceridemic individuals: A randomized crossover trial
    1
    1. scibot 21 Aug 2024
      RRID:SCF_011848

      DOI: 10.1016/j.xcrm.2024.101682

      Resource: Trimmomatic (RRID:SCR_011848)

      Curator: @vtello

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      RRIDCUR:Unresolved RRID:SCR_011848
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    sciencedirect.com/science/article/pii/S2666379124004038
  23. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Deciphering cancer genomes with GenomeSpy: a grammar-based visualization toolkit
    1
    1. scibot 19 Aug 2024
      RRID:SCR_011848

      DOI: 10.1093/gigascience/giae040

      Resource: Trimmomatic (RRID:SCR_011848)

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    ncbi.nlm.nih.gov/pmc/articles/PMC11299109/
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A trade-off in evolution: the adaptive landscape of spiders without venom glands
    1
    1. scibot 19 Aug 2024
      RRID:SCR_011848

      DOI: 10.1093/gigascience/giae048

      Resource: Trimmomatic (RRID:SCR_011848)

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    ncbi.nlm.nih.gov/pmc/articles/PMC11299198/
  25. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    p300 KAT Regulates SOX10 Stability and Function in Human Melanoma
    1
    1. scibot 18 Aug 2024
      RRID:SCR_011848

      DOI: 10.1158/2767-9764.CRC-24-0124

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    ncbi.nlm.nih.gov/pmc/articles/PMC11293458/
  26. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Transcriptomic analysis of the hippocampus from six inbred strains of mice suggests a basis for sex‐specific susceptibility and severity of neurological disorders
    1
    1. scibot 02 Aug 2024
      OMICS_01097

      DOI: 10.1002/cne.23989

      Resource: Trimmomatic (RRID:SCR_011848)

      Curator: @jcabotaj

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      RRID:SCR_011848 RRIDCUR:Validated
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    onlinelibrary.wiley.com/doi/10.1002/cne.23989/full
  27. Jul 2024
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosomal-level genome assembly and single-nucleotide polymorphism sites of black-faced spoonbill Platalea minor
    1
    1. scibot 31 Jul 2024
      RRID:SCR_011848

      DOI: 10.46471/gigabyte.130

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    ncbi.nlm.nih.gov/pmc/articles/PMC11273517/
  29. www.nature.com www.nature.com
    Novel molecular subtypes of METex14 non-small cell lung cancer with distinct biological and clinical significance
    1
    1. scibot 30 Jul 2024
      RRID:SCR_011848

      DOI: 10.1038/s41698-024-00642-6

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    nature.com/articles/s41698-024-00642-6
  30. www.sciencedirect.com www.sciencedirect.com
    BACH1 inhibits senescence, obesity, and short lifespan by ferroptotic FGF21 secretion
    1
    1. scibot 23 Jul 2024
      RRID:SCR_011848

      DOI: 10.1016/j.celrep.2024.114403

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    sciencedirect.com/science/article/pii/S2211124724007319
  31. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Cellular-resolution gene expression mapping reveals organization in the head ganglia of the gastropod, Berghia stephanieae
    1
    1. scibot 18 Jul 2024
      RRID:SCR_011848

      DOI: 10.1002/cne.25628

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    onlinelibrary.wiley.com/doi/10.1002/cne.25628
  32. www.cell.com www.cell.com
    Maternal gestational diabetes mellitus associates with altered gut microbiome composition and head circumference abnormalities in male offspring
    1
    1. scibot 16 Jul 2024
      RRID:SCR_011848

      DOI: 10.1016/j.chom.2024.06.005

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    cell.com/cell-host-microbe/abstract/S1931-3128(24)00223-3
  33. Jun 2024
  34. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the rare and endangered Grantham’s camellia, Camellia granthamiana
    1
    1. scibot 02 Jun 2024
      RRID:SCR_011848

      DOI: 10.46471/gigabyte.124

      Resource: Trimmomatic (RRID:SCR_011848)

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    ncbi.nlm.nih.gov/pmc/articles/PMC11131091/
  35. May 2024
  36. www.sciencedirect.com www.sciencedirect.com
    The CD8+ T cell tolerance checkpoint triggers a distinct differentiation state defined by protein translation defects
    1
    1. scibot 23 May 2024
      RRID:SCR_011848

      DOI: 10.1016/j.immuni.2024.04.026

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    sciencedirect.com/science/article/pii/S1074761324002310
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Pharmacologic Targeting of Histone H3K27 Acetylation/BRD4-dependent Induction of ALDH1A3 for Early-phase Drug Tolerance of Gastric Cancer
    1
    1. scibot 22 May 2024
      SCR_011848

      DOI: 10.1158/2767-9764.CRC-23-0639

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    ncbi.nlm.nih.gov/pmc/articles/PMC11104289/
  38. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    De novo transcriptome assembly and genome annotation of the fat-tailed dunnart (Sminthopsis crassicaudata)
    1
    1. scibot 17 May 2024
      RRID:SCR_011848

      DOI: 10.46471/gigabyte.118

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    ncbi.nlm.nih.gov/pmc/articles/PMC11091235/
  39. www.sciencedirect.com www.sciencedirect.com
    SARS-CoV-2 infection exacerbates the cellular pathology of Parkinson’s disease in human dopaminergic neurons and a mouse model
    1
    1. scibot 16 May 2024
      SCR_011848

      DOI: 10.1016/j.xcrm.2024.101570

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      Curator: @abever99

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    sciencedirect.com/science/article/pii/S2666379124002623
  40. www.sciencedirect.com www.sciencedirect.com
    A phosphate transporter in VIPergic neurons of the suprachiasmatic nucleus gates locomotor activity during the light/dark transition in mice
    1
    1. scibot 14 May 2024
      RRID:SCR_011848

      DOI: 10.1016/j.celrep.2024.114220

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    sciencedirect.com/science/article/pii/S2211124724005485
  41. 52.53.155.43 52.53.155.43
    Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
    1
    1. scibot 10 May 2024
      RRID:SCR_011848

      DOI: 10.1101/2024.02.19.579948

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    52.53.155.43/cd1f9c7be80d56e211920ba04afd056c82fa391f/2024.02.19.579948.full-html.html
  42. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Swd2/Cps35 determines H3K4 tri-methylation via interactions with Set1 and Rad6
    1
    1. scibot 09 May 2024
      RRID:SCR_011848

      DOI: 10.1186/s12915-024-01903-3

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    ncbi.nlm.nih.gov/pmc/articles/PMC11069235/
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the edible jelly fungus Dacryopinax spathularia (Dacrymycetaceae)
    1
    1. scibot 08 May 2024
      RRID:SCR_011848

      DOI: 10.46471/gigabyte.120

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    ncbi.nlm.nih.gov/pmc/articles/PMC11066560/
  44. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosomal-level genome assembly of the long-spined sea urchin Diadema setosum (Leske, 1778)
    1
    1. scibot 08 May 2024
      RRID:SCR_011848

      DOI: 10.46471/gigabyte.121

      Resource: Trimmomatic (RRID:SCR_011848)

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    ncbi.nlm.nih.gov/pmc/articles/PMC11066563/
  45. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of the common chiton, Liolophura japonica (Lischke, 1873)
    1
    1. scibot 08 May 2024
      RRID:SCR_011848

      DOI: 10.46471/gigabyte.123

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    ncbi.nlm.nih.gov/pmc/articles/PMC11068029/
  46. Apr 2024
  47. www.sciencedirect.com www.sciencedirect.com
    Tandemly expanded OR17b in Himalaya ghost moth facilitates larval food allocation via olfactory reception of plant-derived tricosane
    2
    1. scibot 24 Apr 2024
      RRID:SCR_011848

      DOI: 10.1016/j.ijbiomac.2024.131503

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    2. scibot 24 Apr 2024
      RRID:SCR_011848

      DOI: 10.1016/j.ijbiomac.2024.131503

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    A senescence restriction point acting on chromatin integrates oncogenic signals
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    PRMT1 sustains de novo fatty acid synthesis by methylating PHGDH to drive chemoresistance in triple-negative breast cancer
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  50. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Whole genome assembly and annotation of the King Angelfish (Holacanthus passer) gives insight into the evolution of marine fishes of the Tropical Eastern Pacific
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  51. Mar 2024
  52. www.nature.com www.nature.com
    RBBP6 maintains glioblastoma stem cells through CPSF3-dependent alternative polyadenylation
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    Chromosome level genome assembly and transcriptome analysis of E11 cells infected by tilapia lake virus
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    Estrogen therapy induces receptor-dependent DNA damage enhanced by PARP inhibition in ER+ breast cancer
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    C17orf80 binds the mitochondrial genome to promote its replication
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    Sexually dimorphic control of affective state processing and empathic behaviors
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  57. Feb 2024
  58. gigabytejournal.com gigabytejournal.com
    The genome assembly and annotation of the white-lipped tree pit viper Trimeresurus albolabris
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    PHF6 suppresses self-renewal of leukemic stem cells in AML
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    Development of sexual dimorphism of skeletal muscles through the adrenal cortex, caused by androgen-induced global gene suppression
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  61. Jan 2024
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    Glucose Deprivation Promotes Pseudohypoxia and Dedifferentiation in Lung Adenocarcinoma
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    Discrete prefrontal neuronal circuits determine repeated stress-induced behavioral phenotypes in male mice
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    SARS-CoV-2 RNA stabilizes host mRNAs to elicit immunopathogenesis
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    Canonical IRE1 function needed to sustain vigorous natural killer cell proliferation during viral infection.
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  67. gigabytejournal.com gigabytejournal.com
    Genome assembly and annotation of the king ratsnake, Elaphe carinata
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  68. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Characterization of nucleolar SUMO isopeptidases unveils a general p53-independent checkpoint of impaired ribosome biogenesis
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    Differential benefit of metronomic chemotherapy among triple negative breast cancer subtypes treated in the IBCSG Trial 22-00
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  70. www.science.org www.science.org
    A single-cell multi-omic atlas spanning the adult rhesus macaque brain
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    Genetic swamping of the critically endangered Scottish wildcat was recent and accelerated by disease
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    Dual targeting of MAPK and PI3K pathways unlocks redifferentiation of Braf-mutated thyroid cancer organoids
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    Hypoxia potentiates the inflammatory fibroblast phenotype promoted by pancreatic cancer cell-derived cytokines
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  74. 52.53.155.43 52.53.155.43
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  75. Nov 2023
  76. www.sciencedirect.com www.sciencedirect.com
    Debugging and consolidating multiple synthetic chromosomes reveals combinatorial genetic interactions
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    Structured wound angiogenesis instructs mesenchymal barrier compartments in the regenerating nerve
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    Genome assembly and annotation of the Brown-Spotted Pit viper Protobothrops mucrosquamatus
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    Immunosuppressive low-density neutrophils in the blood of cancer patients display a mature phenotype
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    Population-specific Mutation Patterns in Breast Tumors from African American, European American, and Kenyan Patients
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    Broodstock nutritional programming differentially affects the hepatic transcriptome and genome-wide DNA methylome of farmed gilthead sea bream (Sparus aurata) depending on genetic background
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    The hypoxia-regulated ectonucleotidase CD73 is a host determinant of HIV latency
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  83. Oct 2023
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    The evolution of endoparasitism and complex life cycles in parasitic platyhelminths
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    Biosynthetic gene profiling and genomic potential of the novel photosynthetic marine bacterium Roseibaca domitiana
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  86. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A single-cell multi-omic atlas spanning the adult rhesus macaque brain
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  87. 52.53.155.43 52.53.155.43
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    Prenatal alcohol alters inflammatory signatures in enteric portal tissues following adult-onset cerebrovascular ischemic stroke
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  89. Sep 2023
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    Characterization of the male-specific region containing the candidate sex-determining gene in Amur catfish (Silurus asotus) using third-generation- and pool-sequencing data
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    Thermophilic methane oxidation is widespread in Aotearoa-New Zealand geothermal fields
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    Distinct pathways of adaptive evolution in Cryptococcus neoformans reveal a mutation in adenylyl cyclase with trade-offs for pathogenicity
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  93. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Peeling back the layers of coral holobiont multi-omics data
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  94. Aug 2023
  95. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Haplogenome assembly reveals structural variation in Eucalyptus interspecific hybrids
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  96. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Targeted single cell isolation of spontaneously escaping live melanoma cells for comparative transcriptomics
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  97. 52.53.155.43 52.53.155.43
    SnakeMAGs: a simple, efficient, flexible and scalable workflow to reconstruct prokaryotic genomes from metagenomes
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  98. 52.53.155.43 52.53.155.43
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  99. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Cooperative and competitive regulation of the astrocytic transcriptome by neurons and endothelial cells: Impact on astrocyte maturation
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  100. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome-Wide SNP and Indel Discovery in Abaca (Musa textilis Née) and among Other Musa spp. for Abaca Genetic Resources Management
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  101. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A comparison of the impact on neuronal transcriptome and cognition of rAAV5 transduction with three different doses in the mouse hippocampus
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  102. Jul 2023
  103. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic analyses provide insights into the evolution and salinity adaptation of halophyte Tamarix chinensis
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  104. www.sciencedirect.com www.sciencedirect.com
    Bacterial clade-specific analysis identifies distinct epithelial responses in inflammatory bowel disease
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    CRIC-seq protocol for in situ profiling of proximal RNA-RNA contacts associated with RNA-binding proteins
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    The genome assembly and annotation of the many-banded krait, Bungarus multicinctus
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  107. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the hybrid grapevine Vitis ‘Chambourcin’
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  108. Jun 2023
  109. www.sciencedirect.com www.sciencedirect.com
    An integrated cellular and molecular model of gastric neuroendocrine cancer evolution highlights therapeutic targets
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    Transcriptomic landscape of early hair follicle and epidermal development
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  111. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multi-omic longitudinal study reveals immune correlates of clinical course among hospitalized COVID-19 patients
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  112. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Integrated metabolic and genetic analysis reveals distinct features of human differentiated thyroid cancer
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  113. 52.53.155.43 52.53.155.43
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  114. 52.53.155.43 52.53.155.43
    High copy number of multi-drug resistance genes in spent coffee grounds used in organic composting
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  115. aacrjournals.org aacrjournals.org
    MYC/glutamine dependency is a therapeutic vulnerability in pancreatic cancer with deoxycytidine kinase inactivation-induced gemcitabine resistance
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  116. dx.doi.org dx.doi.org
    NAD + Metabolism Generates a Metabolic Vulnerability in Endocrine-Resistant Metastatic Breast Tumors in Females
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      DOI: 10.1210/endocr/bqad073

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  117. www.mdpi.com www.mdpi.com
    SAM-Competitive EZH2-Inhibitors Induce Platinum Resistance by EZH2-Independent Induction of ABC-Transporters
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      DOI: 10.3390/cancers15113043

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  118. May 2023
  119. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Comparative analysis of microRNA expression profiles in shoot and root tissues of contrasting rice cultivars (Oryza sativa L.) with different salt stress tolerance
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      DOI: 10.1371/journal.pone.0286140

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  120. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Crown Pearl V2: an improved genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758)
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  121. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of an Australian native grass species reveals a recent whole-genome duplication and biased gene retention of genes involved in stress response
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  122. academic.oup.com academic.oup.com
    A high-quality, long-read genome assembly of the whitelined sphinx moth (Lepidoptera: Sphingidae: Hyles lineata) shows highly conserved melanin synthesis pathway genes
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      DOI: 10.1093/g3journal/jkad090

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  123. www.biorxiv.org www.biorxiv.org
    Bcl-xL is translocated to the nucleus via CtBP2 to epigenetically promote metastasis
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      DOI: 10.1101/2023.04.26.538373

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  124. Apr 2023
  125. onlinelibrary.wiley.com onlinelibrary.wiley.com
    The microbial community dynamics of cocaine sensitization in two behaviorally divergent strains of collaborative cross mice
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      DOI: 10.1111/gbb.12845

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  126. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Molecular mechanisms underlying hematophagia revealed by comparative analyses of leech genomes
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  127. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Application of Genomic Sequencing to Refine Patient Stratification for Adjuvant Therapy in Renal Cell Carcinoma
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      DOI: 10.1158/1078-0432.CCR-22-1936

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  128. Mar 2023
  129. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Atria: an ultra-fast and accurate trimmer for adapter and quality trimming
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  130. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Improvements to the Gulf pipefish Syngnathus scovelli genome
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  131. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Integrated metabolic and genetic analysis reveals distinct features of primary differentiated thyroid cancer and its metastatic potential in humans
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  132. www.sciencedirect.com www.sciencedirect.com
    Capture RIC-seq reveals positional rules of PTBP1-associated RNA loops in splicing regulation
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    Stepwise activities of mSWI/SNF family chromatin remodeling complexes direct T cell activation and exhaustion
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  134. europepmc.org europepmc.org
    mRNAs encoding IL-12 and a decoy-resistant variant of IL-18 synergize to engineer T cells for efficacious intratumoral adoptive immunotherapy
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  135. link.springer.com link.springer.com
    Expression of down-regulated ERV LTR elements associates with immune activation in human small-cell lung cancers
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      DOI: 10.1186/s13100-023-00290-w

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  136. www.sciencedirect.com www.sciencedirect.com
    Transcriptional control of nucleus accumbens neuronal excitability by retinoid X receptor alpha tunes sensitivity to drug rewards
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  137. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Smoking-associated Downregulation of FILIP1L Enhances Lung Adenocarcinoma Progression Through Mucin Production, Inflammation, and Fibrosis
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      DOI: 10.1158/2767-9764.CRC-22-0233

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  138. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Phagocytosis of Glioma Cells Enhances the Immunosuppressive Phenotype of Bone Marrow–Derived Macrophages
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  139. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    SnakeMAGs: a simple, efficient, flexible and scalable workflow to reconstruct prokaryotic genomes from metagenomes
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  140. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    MeCP2 regulates Gdf11, a dosage-sensitive gene critical for neurological function
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      DOI: 10.7554/eLife.83806

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  141. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic Resources for the North American Water Vole (Microtus richardsoni) and the Montane Vole (Microtus montanus)
    1
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  142. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A reference genome for the critically endangered woylie, Bettongia penicillata ogilbyi
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  143. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A phased, chromosome-scale genome of ‘Honeycrisp’ apple (Malus domestica)
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  144. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    De novo construction of a transcriptome for the stink bug crop pest Chinavia impicticornis during late development
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  145. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The first Antechinus reference genome provides a resource for investigating the genetic basis of semelparity and age-related neuropathologies
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  146. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The draft genome assembly of the critically endangered Nyssa yunnanensis, a plant species with extremely small populations endemic to Yunnan Province, China
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  147. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the numbat (Myrmecobius fasciatus), the only termitivorous marsupial
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  148. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A genome assembly of the Atlantic chub mackerel (Scomber colias): a valuable teleost fishing resource
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  149. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Infection dynamics, transmission, and evolution after an outbreak of porcine reproductive and respiratory syndrome virus
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  150. Feb 2023
  151. link.springer.com link.springer.com
    Genes critical for development and differentiation of dopaminergic neurons are downregulated in Parkinson’s disease
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  152. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome and the identification of sex chromosomes in Uloborus diversus
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    Epitranscriptomic regulation of cortical neurogenesis via Mettl8-dependent mitochondrial tRNA m3C modification
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  154. academic.oup.com academic.oup.com
    Chromosome-level genome assembly of goose provides insight into the adaptation and growth of local goose breeds
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  155. Jan 2023
  156. www.nature.com www.nature.com
    A chromosome-level genome assembly of Plantago ovata
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      DOI: 10.1038/s41598-022-25078-5

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  157. www.sciencedirect.com www.sciencedirect.com
    Enrichment of oral-derived bacteria in inflamed colorectal tumors and distinct associations of Fusobacterium in the mesenchymal subtype
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    Centromeres as universal hotspots of DNA breakage, driving RAD51-mediated recombination during quiescence
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  159. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic view of the diversity and functional role of archaea and bacteria in the skeleton of the reef-building corals Porites lutea and Isopora palifera
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  160. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Cancer stem cells, not bulk tumor cells, determine mechanisms of resistance to SMO inhibitors
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  161. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic study and lipidomic bioassay of Leeuwenhoekiella parthenopeia: A novel rare biosphere marine bacterium that inhibits tumor cell viability
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  162. www.biorxiv.org www.biorxiv.org
    A chromosome-scale assembly for tetraploid sour cherry (Prunus cerasus L.) ‘Montmorency’ identifies three distinct ancestral Prunus genomes
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      DOI: 10.1101/2023.01.10.523438

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  163. link.springer.com link.springer.com
    Diversity and structure of bacterial and archaeal communities associated with the vulnerable sponge Halichondria cebimarensis
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  164. www.sciencedirect.com www.sciencedirect.com
    Microbial glutamate metabolism predicts intravenous cocaine self-administration in diversity outbred mice
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  165. Dec 2022
  166. 52.53.155.43 52.53.155.43
    The complete mitochondrial genome sequence of Chimarrogale leander (Insectivora: Soricidae)
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      DOI: 10.12688/f1000research.124450.1

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  167. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Targeting metabolic adaptations in the breast cancer–liver metastatic niche using dietary approaches to improve endocrine therapy efficacy
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  168. Nov 2022
  169. 52.53.155.43 52.53.155.43
    The complete mitochondrial genome sequence of Chimarrogale leander (Insectivora: Soricidae)
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  170. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identifying C. elegans Lifespan Mutants by Screening for Early-Onset Protein Aggregation
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  171. www.sciencedirect.com www.sciencedirect.com
    Long non-coding RNA PCAT19 safeguards DNA in quiescent endothelial cells by preventing uncontrolled phosphorylation of RPA2
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  172. academic.oup.com academic.oup.com
    High-quality genome assembles from key Hawaiian coral species
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      DOI: 10.1093/gigascience/giac098

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  173. Oct 2022
  174. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Continuous sensing of IFNα by hepatic endothelial cells shapes a vascular antimetastatic barrier
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      DOI: 10.7554/eLife.80690

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  175. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multiomic characterization and drug testing establish circulating tumor cells as an ex vivo tool for personalized medicine
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  176. 52.53.155.43 52.53.155.43
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  177. 52.53.155.43 52.53.155.43
    1-s2.0-S2589004222013530-main-html.html
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  178. Sep 2022
  179. www.sciencedirect.com www.sciencedirect.com
    Ral GTPases are critical regulators of spinal cord myelination and homeostasis
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    Genomic analysis reveals cryptic diversity in aphelids and sheds light on the emergence of Fungi
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  181. academic.oup.com academic.oup.com
    Comparative genome and evolution analyses of an endangered stony coral species Dendrophyllia cribrosa near Dokdo Islands in the East Sea
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      DOI: 10.1093/gbe/evac132

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  182. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Loss of key endosymbiont genes may facilitate early host control of the chromatophore in Paulinella
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    ncbi.nlm.nih.gov/pmc/articles/PMC9450145/
  183. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Intracellular cholesterol pools regulate oncogenic signaling and epigenetic circuitries in Early T-cell Precursor Acute Lymphoblastic Leukemia
    1
    1. scibot 02 Sep 2022
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      DOI: 10.1158/2159-8290.CD-21-0551

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    ncbi.nlm.nih.gov/pmc/articles/PMC8904296/
  184. Aug 2022
  185. www.sciencedirect.com www.sciencedirect.com
    Vitamin D receptor activation is a feasible therapeutic target to impair adrenocortical tumorigenesis
    1
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      DOI: 10.1016/j.mce.2022.111757

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  186. 52.53.155.43 52.53.155.43
    ccr-22-0391-html.html
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  187. www.sciencedirect.com www.sciencedirect.com
    Divergent roles for the gut intraepithelial lymphocyte GLP-1R in control of metabolism, microbiota, and T cell-induced inflammation
    1
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      DOI: 10.1016/j.cmet.2022.08.003

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  188. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Assessment of Androgen Receptor splice variant-7 as a biomarker of clinical response in castration-sensitive prostate cancer
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      DOI: 10.1158/1078-0432.CCR-22-0851

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    ncbi.nlm.nih.gov/pmc/articles/PMC9378683/
  189. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Losartan blocks osteosarcoma-elicited monocyte recruitment, and combined with the kinase inhibitor toceranib, exerts significant clinical benefit in canine metastatic osteosarcoma
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  190. Jul 2022
  191. academic.oup.com academic.oup.com
    Chromosome-Level Genome Assembly of the Butter Clam Saxidomus purpuratus
    1
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      DOI: 10.1093/gbe/evac106

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  192. bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com
    BPS Publications
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    bpspubs.onlinelibrary.wiley.com/doi/10.1111/bph.15910
  193. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level assembly and annotation of the blue catfish Ictalurus furcatus, an aquaculture species for hybrid catfish reproduction, epigenetics, and heterosis studies
    1
    1. scibot 14 Jul 2022
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    ncbi.nlm.nih.gov/pmc/articles/PMC9270728/
  194. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of Plazaster borealis sheds light on the morphogenesis of multiarmed starfish and its regenerative capacity
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      DOI: 10.1093/gigascience/giac063

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    ncbi.nlm.nih.gov/pmc/articles/PMC9270726/
  195. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Neoadjuvant chemotherapy induces genomic and transcriptomic changes in ovarian cancer
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  196. www.cell.com www.cell.com
    Bacterial growth in multicellular aggregates leads to the emergence of complex life cycles
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    cell.com/current-biology/fulltext/S0960-9822(22)00923-X
  197. Jun 2022
  198. aacrjournals.org aacrjournals.org
    Cancer Stem Cells, not Bulk Tumor Cells, Determine Mechanisms of Resistance to SMO Inhibitors
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      DOI: 10.1158/2767-9764.CRC-22-0124

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    aacrjournals.org/cancerrescommun/article/2/6/402/699311/Cancer-Stem-Cells-not-Bulk-Tumor-Cells-Determine
  199. aacrjournals.org aacrjournals.org
    Predictive markers of response to neoadjuvant durvalumab with nab-paclitaxel and dose dense doxorubicin/cyclophosphamide in basal-like triple negative breast cancer
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    aacrjournals.org/clincancerres/article/28/12/2587/699273/Predictive-Markers-of-Response-to-Neoadjuvant
  200. May 2022
  201. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Global Phylogeny of Mycobacterium avium and Identification of Mutation Hotspots During Niche Adaptation
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      DOI: 10.3389/fmicb.2022.892333

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    ncbi.nlm.nih.gov/pmc/articles/PMC9121174/
  202. www.sciencedirect.com www.sciencedirect.com
    Sexually dimorphic RNA helicases DDX3X and DDX3Y differentially regulate RNA metabolism through phase separation
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    sciencedirect.com/science/article/pii/S1097276522003859
  203. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Deconvoluting mechanisms of acquired resistance to RAF inhibitors in BRAF V600E mutant human glioma
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      DOI: 10.1158/1078-0432.CCR-21-2660

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    ncbi.nlm.nih.gov/pmc/articles/PMC8595717/
  204. www.sciencedirect.com www.sciencedirect.com
    Isolation disrupts social interactions and destabilizes brain development in bumblebees
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    sciencedirect.com/science/article/pii/S0960982222007023
  205. aacrjournals.org aacrjournals.org
    Melanoma-secreted Amyloid Beta Suppresses Neuroinflammation and Promotes Brain Metastasis
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    aacrjournals.org/cancerdiscovery/article/12/5/1314/694563/Melanoma-Secreted-Amyloid-Beta-Suppresses
  206. gigabytejournal.com gigabytejournal.com
    LT1, an ONT long-read-based assembly scaffolded with Hi-C data and polished with short reads
    1
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      DOI: 10.46471/gigabyte.51

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    gigabytejournal.com/articles/51
  207. aacrjournals.org aacrjournals.org
    A Phenogenetic Axis that Modulates Clinical Manifestation and Predicts Treatment Outcome in Primary Myeloid NeoplasmsLandscape of Myeloid Neoplasms in a Chinese Cohort
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      DOI: 10.1158/2767-9764.CRC-21-0194

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    aacrjournals.org/cancerrescommun/article/2/4/258/694752/A-Phenogenetic-Axis-that-Modulates-Clinical
  208. 52.53.155.43 52.53.155.43
    Lessons learned about the biology and genomics of Diaphorina citri infection with “Candidatus Liberibacter asiaticus” by integrating new and archived organ-specific transcriptome data
    1
    1. scibot 05 May 2022
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      DOI: 10.1093/gigascience/giac035

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    52.53.155.43/d33d93644b6f555490c97ad70ff221cb688ba025/out-html.html
  209. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae
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      DOI: 10.1093/gigascience/giac027

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    ncbi.nlm.nih.gov/pmc/articles/PMC9055855/
  210. Apr 2022
  211. www.sciencedirect.com www.sciencedirect.com
    An adult-stage transcriptional program for survival of serotonergic connectivity
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      DOI: 10.1016/j.celrep.2022.110711

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    sciencedirect.com/science/article/pii/S2211124722004727
  212. www.sciencedirect.com www.sciencedirect.com
    HNF4A modulates glucocorticoid action in the liver
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    sciencedirect.com/science/article/pii/S2211124722004557
  213. Mar 2022
  214. elifesciences.org elifesciences.org
    Nuclear hormone receptor NHR-49 acts in parallel with HIF-1 to promote hypoxia adaptation in Caenorhabditis elegans
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      DOI: 10.7554/eLife.67911

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    elifesciences.org/articles/67911
  215. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    KOREF_S1: phased, parental trio-binned Korean reference genome using long reads and Hi-C sequencing methods
    1
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      DOI: 10.1093/gigascience/giac022

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    ncbi.nlm.nih.gov/pmc/articles/PMC8952264/
  216. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly, annotation, and phylogenomics of the gooseneck barnacle Pollicipes pollicipes
    1
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      DOI: 10.1093/gigascience/giac021

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    ncbi.nlm.nih.gov/pmc/articles/PMC8917513/
  217. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    High-quality assembly of the reference genome for scarlet sage, Salvia splendens, an economically important ornamental plant
    1
    1. scibot 05 Mar 2022
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      DOI: 10.1093/gigascience/giy068

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    ncbi.nlm.nih.gov/labs/pmc/articles/PMC6030905/
  218. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome sequence of the Japanese oak silk moth, Antheraea yamamai: the first draft genome in the family Saturniidae
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      DOI: 10.1093/gigascience/gix113

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    ncbi.nlm.nih.gov/labs/pmc/articles/PMC5774507/
  219. www.sciencedirect.com www.sciencedirect.com
    Age-associated decline of MondoA drives cellular senescence through impaired autophagy and mitochondrial homeostasis
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    sciencedirect.com/science/article/pii/S2211124722001711
  220. Feb 2022
  221. www.sciencedirect.com www.sciencedirect.com
    Simultaneous cellular and molecular phenotyping of embryonic mutants using single-cell regulatory trajectories
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      DOI: 10.1016/j.devcel.2022.01.016

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    sciencedirect.com/science/article/pii/S1534580722000557
  222. academic.oup.com academic.oup.com
    A chromosome-level genome assembly and annotation of the desert horned lizard, Phrynosoma platyrhinos, provides insight into chromosomal rearrangements among reptiles
    1
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      DOI: 10.1093/gigascience/giab098

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giab098/6521878
  223. Jan 2022
  224. elifesciences.org elifesciences.org
    Genetic basis and dual adaptive role of floral pigmentation in sunflowers
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      DOI: 10.7554/eLife.72072

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    elifesciences.org/articles/72072
  225. academic.oup.com academic.oup.com
    Chromosome-level genome assembly of the shuttles hoppfish, Periophthalmus modestus
    1
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      DOI: 10.1093/gigascience/giab089

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giab089/6505119
  226. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Improved chromosome-level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) integrating Pacific Biosciences long reads and a high-density linkage map
    1
    1. scibot 15 Jan 2022
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      DOI: 10.1093/gigascience/giab097

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    ncbi.nlm.nih.gov/pmc/articles/PMC8756199/
  227. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Enhancer RNA Expression in Response to Glucocorticoid Treatment in Murine Macrophages
    1
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      DOI: 10.3390/cells11010028

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    ncbi.nlm.nih.gov/pmc/articles/PMC8744892/
  228. Dec 2021
  229. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-quality genome and comparison of short- versus long-read transcriptome of the palaearctic duck Aythya fuligula (tufted duck)
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      DOI: 10.1093/gigascience/giab081

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    ncbi.nlm.nih.gov/pmc/articles/PMC8685854/
  230. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    RNA-binding protein Mub1 and the nuclear RNA exosome act to fine-tune environmental stress response
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      DOI: 10.26508/lsa.202101111

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    ncbi.nlm.nih.gov/pmc/articles/PMC8645331/
  231. www.sciencedirect.com www.sciencedirect.com
    Parity-induced changes to mammary epithelial cells control NKT cell expansion and mammary oncogenesis
    1
    1. scibot 08 Dec 2021
      RRID:SCR_011848

      DOI: 10.1016/j.celrep.2021.110099

      Resource: Trimmomatic (RRID:SCR_011848)

      Curator: @scibot

      SciCrunch record: RRID:SCR_011848

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      RRID:SCR_011848
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    sciencedirect.com/science/article/pii/S221112472101593X