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  1. Aug 2021
  2. www.eneuro.org www.eneuro.org
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  3. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    ncbi.nlm.nih.gov/pmc/articles/PMC6224195/
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    ncbi.nlm.nih.govhttp://europepmc.org/articles/PMC6070528/
  5. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Sex‐dependent and sex‐independent regulatory systems of size variation in natural populations
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    ncbi.nlm.nih.gov/pmc/articles/PMC6878047/
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    A 5‐gene prognostic nomogram predicting survival probability of glioblastoma patients
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    ncbi.nlm.nih.gov/pmc/articles/PMC6456771/
  7. www.sciencedirect.com www.sciencedirect.com
    DUX4-Induced Histone Variants H3.X and H3.Y Mark DUX4 Target Genes for Expression
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    sciencedirect.com/science/article/pii/S2211124719313257
  8. Jul 2021
  9. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptomic Signatures of Postnatal and Adult Intrinsically Photosensitive Ganglion Cells
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    1. scibot 31 Jul 2021
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    ncbi.nlm.nih.gov/pmc/articles/PMC6712207/
  10. academic.oup.com academic.oup.com
    Gtf2i and Gtf2ird1 mutation do not account for the full phenotypic effect of the Williams syndrome critical region in mouse models
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    1. scibot 31 Jul 2021
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    academic.oup.com/hmg/advance-article/doi/10.1093/hmg/ddz176/5550314
  11. journals.sagepub.com journals.sagepub.com
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    1. scibot 31 Jul 2021
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    journals.sagepub.com/doi/abs/10.1177/1759091419843393
  12. onlinelibrary.wiley.com onlinelibrary.wiley.com
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    1. scibot 31 Jul 2021
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    onlinelibrary.wiley.com/doi/full/10.1002/brb3.1258
  13. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    1. scibot 31 Jul 2021
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    ncbi.nlm.nih.gov/pmc/articles/PMC6361723/
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    HUMAN TROPHOBLAST DIFFERENTIATION IS ASSOCIATED WITH PROFOUND GENE REGULATORY AND EPIGENETIC CHANGES
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    1. scibot 30 Jul 2021
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    academic.oup.com/endo/article-abstract/160/9/2189/5530214
  15. www.embopress.org www.embopress.org
    CDK12 drives breast tumor initiation and trastuzumab resistance via WNT and IRS1‐ErbB‐PI3K signaling
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  16. elifesciences.org elifesciences.org
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    1. scibot 30 Jul 2021
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    1. scibot 30 Jul 2021
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    elifesciences.org/articles/26876
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    Targeting CDK9 Reactivates Epigenetically Silenced Genes in Cancer
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    1. scibot 30 Jul 2021
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    sciencedirect.com/science/article/pii/S0092867418312637
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    Chromatin Environment and Cellular Context Specify Compensatory Activity of Paralogous MEF2 Transcription Factors
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    sciencedirect.com/science/article/pii/S2211124719313336
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    DUX4-Induced Histone Variants H3.X and H3.Y Mark DUX4 Target Genes for Expression
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    sciencedirect.com/science/article/pii/S2211124719313257
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    Modulation of Microglia by Voluntary Exercise or CSF1R Inhibition Prevents Age-Related Loss of Functional Motor Units
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    sciencedirect.com/science/article/pii/S2211124719312963
  22. www.frontiersin.org www.frontiersin.org
    Understanding the Mechanistic Contribution of Herbal Extracts in Compound Kushen Injection With Transcriptome Analysis
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    frontiersin.org/articles/10.3389/fonc.2019.00632/full
  23. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genetic interactions of G-quadruplexes in humans
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    ncbi.nlm.nih.gov/pmc/articles/PMC6615864/
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    Translational Regulation of Non-autonomous Mitochondrial Stress Response Promotes Longevity
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    sciencedirect.com/science/article/pii/S2211124719308587
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    AGO CLIP Reveals an Activated Network for Acute Regulation of Brain Glutamate Homeostasis in Ischemic Stroke
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    sciencedirect.com/science/article/pii/S2211124719308551
  26. www.jneurosci.org www.jneurosci.org
    Antagonizing Increased miR-135a Levels at the Chronic Stage of Experimental TLE Reduces Spontaneous Recurrent Seizures
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    Heart Regeneration in the Mexican Cavefish
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  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  29. www.eneuro.org www.eneuro.org
    Identification of Immediate Early Genes in the Nervous System of Snail Helix lucorum
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  30. elifesciences.org elifesciences.org
    Transitions in cell potency during early mouse development are driven by Notch
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    PI3K Inhibition Activates SGK1 via a Feedback Loop to Promote Chromatin-Based Regulation of ER-Dependent Gene Expression
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    sciencedirect.com/science/article/pii/S2211124719302979
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    DNA Hypermethylation Encroachment at CpG Island Borders in Cancer Is Predisposed by H3K4 Monomethylation Patterns
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    sciencedirect.com/science/article/pii/S1535610819300388
  33. emboj.embopress.org emboj.embopress.org
    BRD4 directs hematopoietic stem cell development and modulates macrophage inflammatory responses
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    emboj.embopress.org/content/early/2019/03/06/embj.2018100293
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    Widespread and Functional RNA Circularization in Localized Prostate Cancer
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  35. www.eneuro.org www.eneuro.org
    Molecular Profiling Defines Evolutionarily Conserved Transcription Factor Signatures of Major Vestibulospinal Neuron Groups
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  36. www.sciencedirect.com www.sciencedirect.com
    Developmental Heterogeneity of Microglia and Brain Myeloid Cells Revealed by Deep Single-Cell RNA Sequencing
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    sciencedirect.com/science/article/pii/S0896627318310821
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    Impairment of Angiogenesis by Fatty Acid Synthase Inhibition Involves mTOR Malonylation
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    AXIN2+ Pericentral Hepatocytes Have Limited Contributions to Liver Homeostasis and Regeneration
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    sciencedirect.com/science/article/pii/S1934590919304321
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    Transmembrane Protease TMPRSS11B Promotes Lung Cancer Growth by Enhancing Lactate Export and Glycolytic Metabolism
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    foxF-1 Controls Specification of Non-body Wall Muscle and Phagocytic Cells in Planarians
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    sciencedirect.com/science/article/pii/S0960982218313599
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    Gain of CTCF-Anchored Chromatin Loops Marks the Exit from Naive Pluripotency
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    sciencedirect.com/science/article/pii/S2405471218303892
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    A CHAF1B-Dependent Molecular Switch in Hematopoiesis and Leukemia Pathogenesis
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    sciencedirect.com/science/article/pii/S1535610818304707
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    Genetic Analysis Reveals AMPK Is Required to Support Tumor Growth in Murine Kras-Dependent Lung Cancer Models
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    sciencedirect.com/science/article/pii/S1550413118306375
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    MYC Protein Interactome Profiling Reveals Functionally Distinct Regions that Cooperate to Drive Tumorigenesis
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    Defining T Cell States Associated with Response to Checkpoint Immunotherapy in Melanoma
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    Ezh2 and Runx1 Mutations Collaborate to Initiate Lympho-Myeloid Leukemia in Early Thymic Progenitors
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  47. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Transcriptome profiling of developing photoreceptor subtypes reveals candidate genes involved in avian photoreceptor diversification
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  48. journals.sagepub.com journals.sagepub.com
    Phenotypic Screening Following Transcriptomic Deconvolution to Identify Transcription Factors Mediating Axon Growth Induced by a Kinase Inhibitor - Jeffrey A. Lowell, Nicholas O’Neill, Matt C. Danzi, Hassan Al-Ali, John L. Bixby, Vance P. Lemmon, 2021
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  49. Jun 2021
  50. cancerdiscovery.aacrjournals.org cancerdiscovery.aacrjournals.org
    LKB1/STK11 is a tumor suppressor in the progression of myeloproliferative neoplasms
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  51. mcr.aacrjournals.org mcr.aacrjournals.org
    Development and Characterization of Novel Endoxifen-Resistant Breast Cancer Cell Lines Highlight Numerous Differences from Tamoxifen-Resistant Models
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  52. www.frontiersin.org www.frontiersin.org
    Monocytic Ontogeny of Regenerated Macrophages Characterizes the Mesotheliomagenic Responses to Carbon Nanotubes
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    circPTPN12/miR-21–5 p/∆Np63α pathway contributes to human endometrial fibrosis
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    Omics Profiling of S2P Mutant Fibroblasts as a Mean to Unravel the Pathomechanism and Molecular Signatures of X-Linked MBTPS2 Osteogenesis Imperfecta
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    Type I interferon decreases macrophage energy metabolism during mycobacterial infection
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  56. May 2021
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    Calibration of cell-intrinsic interleukin-2 response thresholds guides design of a regulatory T cell biased agonist
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    Stem-like cells drive NF1-associated MPNST functional heterogeneity and tumor progression
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  59. www.nature.com www.nature.com
    Cancer of unknown primary stem-like cells model multi-organ metastasis and unveil liability to MEK inhibition
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    HAND1 and BARX1 act as transcriptional and anatomic determinants of malignancy in gastrointestinal stromal tumor
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    Cadherin 11 Promotes Immunosuppression and Extracellular Matrix Deposition to Support Growth of Pancreatic Tumors and Resistance to Gemcitabine in Mice
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    Adult Neural Stem Cells Are Alerted by Systemic Inflammation through TNF-α Receptor Signaling
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    Transcriptional Programs of Circuit Assembly in the Drosophila Visual System
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    SAFB2 Enables the Processing of Suboptimal Stem-Loop Structures in Clustered Primary miRNA Transcripts
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  65. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Shedding Light on the Dynamic Role of the “Target of Rapamycin” Kinase in the Fast-Growing C4 Species Setaria viridis, a Suitable Model for Biomass Crops
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    Pathological angiogenesis in retinopathy engages cellular senescence and is amenable to therapeutic elimination via BCL-xL inhibition
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  67. Apr 2021
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    Erosion of human X chromosome inactivation causes major remodeling of the iPSC proteome
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    Tissue-specific modulation of gene expression in response to lowered insulin signalling in Drosophila
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    Immunogenomic Landscape of Hematological Malignancies
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  72. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    BET Inhibition Blocks Inflammation-Induced Cardiac Dysfunction and SARS-CoV-2 Infection
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  73. Mar 2021
  74. onlinelibrary.wiley.com onlinelibrary.wiley.com
    A Ketogenic Diet Differentially Affects Neuron And Astrocyte Transcription
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  75. elifesciences.org elifesciences.org
    One-shot analysis of translated mammalian lncRNAs with AHARIBO
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  76. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mapping immune variation and var gene switching in naive hosts infected with Plasmodium falciparum
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    Zinc Finger Protein CTCF Regulates Extracellular Matrix (ECM)-Related Gene Expression Associated With the Wnt Signaling Pathway in Gastric Cancer
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    Convergent organization of aberrant MYB complex controls oncogenic gene expression in acute myeloid leukemia
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  79. Feb 2021
  80. academic.oup.com academic.oup.com
    Vitamin D-regulated gene expression profiles: species-specificity and cell-specific effects on metabolism and immunity
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    Def6 regulates endogenous type-I interferon responses in osteoblasts and suppresses osteogenesis
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  82. www.jbc.org www.jbc.org
    The Parkinson's disease–associated kinase LRRK2 regulates genes required for cell adhesion, polarization, and chemotaxis in activated murine macrophages
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  83. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Identification of regenerative processes in neonatal spinal cord injury in the opossum (Monodelphis domestica), a transcriptomic study
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    Zebrafish macrophage developmental arrest underlies depletion of microglia and reveals Csf1r-independent metaphocytes
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    The corepressors GPS2 and SMRT control enhancer and silencer remodeling via eRNA transcription during inflammatory activation of macrophages
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    Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing
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    PDA Indolylmaleimides Induce Anti-Tumor Effects in Prostate Carcinoma Cell Lines Through Mitotic Death
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  88. Jan 2021
  89. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Loss of Parkinson’s susceptibility gene LRRK2 promotes carcinogen-induced lung tumorigenesis
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  90. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Failures of nerve regeneration caused by aging or chronic denervation are rescued by restoring Schwann cell c-Jun
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    A chromosome-level genome assembly of the oriental river prawn, Macrobrachium nipponense
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    A Pathogen-Responsive Gene Cluster for Highly Modified Fatty Acids in Tomato
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    GCNA Interacts with Spartan and Topoisomerase II to Regulate Genome Stability
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    Genome and population sequencing of a chromosome-level genome assembly of the Chinese tapertail anchovy ( Coilia nasus ) provides novel insights into migratory adaptation
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    TREM2 Acts Downstream of CD33 in Modulating Microglial Pathology in Alzheimer’s Disease
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    Recurrent SMARCB1 Mutations Reveal a Nucleosome Acidic Patch Interaction Site That Potentiates mSWI/SNF Complex Chromatin Remodeling
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    Genome-wide Analyses of Chromatin State in Human Mast Cells Reveal Molecular Drivers and Mediators of Allergic and Inflammatory Diseases
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    The alternative regenerative strategy of bearded dragon unveils the key processes underlying vertebrate tooth renewal
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    A Unique Epigenomic Landscape Defines Human Erythropoiesis
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    Oligodendrocyte Intrinsic miR-27a Controls Myelination and Remyelination
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    The Ovulatory Signal Precipitates LRH-1 Transcriptional Switching Mediated by Differential Chromatin Accessibility
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    A Cross-Species Analysis Reveals a General Role for Piezo2 in Mechanosensory Specialization of Trigeminal Ganglia from Tactile Specialist Birds
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    Genome-wide CRISPR-Cas9 Screen Identifies Leukemia-Specific Dependence on a Pre-mRNA Metabolic Pathway Regulated by DCPS
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    Impairing L-Threonine Catabolism Promotes Healthspan through Methylglyoxal-Mediated Proteohormesis
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    The Mouse Microbiome Is Required for Sex-Specific Diurnal Rhythms of Gene Expression and Metabolism
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    Targeting Processive Transcription Elongation via SEC Disruption for MYC-Induced Cancer Therapy
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    Metformin Targets Mitochondrial Electron Transport to Reduce Air-Pollution-Induced Thrombosis
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    CRISPR Activation Screens Systematically Identify Factors that Drive Neuronal Fate and Reprogramming
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    CD8+ T Cell Priming in Established Chronic Viral Infection Preferentially Directs Differentiation of Memory-like Cells for Sustained Immunity
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    Pharmacological Induction of RAS-GTP Confers RAF Inhibitor Sensitivity in KRAS Mutant Tumors
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    MYC Interacts with the G9a Histone Methyltransferase to Drive Transcriptional Repression and Tumorigenesis
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    Dynamic Human Environmental Exposome Revealed by Longitudinal Personal Monitoring
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    LC3-Associated Phagocytosis in Myeloid Cells Promotes Tumor Immune Tolerance
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    Suppression of Plant Immunity by Fungal Chitinase-like Effectors
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    Single Cell and Open Chromatin Analysis Reveals Molecular Origin of Epidermal Cells of the Skin
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    Disruption of the β1L Isoform of GABP Reverses Glioblastoma Replicative Immortality in a TERT Promoter Mutation-Dependent Manner
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    Small Molecule Targeting of Specific BAF (mSWI/SNF) Complexes for HIV Latency Reversal
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    Neuronal activity induces glutathione metabolism gene expression in astrocytes
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    Lung γδ T Cells Mediate Protective Responses during Neonatal Influenza Infection that Are Associated with Type 2 Immunity
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    Quiescent Endothelial Cells Upregulate Fatty Acid β-Oxidation for Vasculoprotection via Redox Homeostasis
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    Transcription Elongation Can Affect Genome 3D Structure
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    Dismissal of RNA Polymerase II Underlies a Large Ligand-Induced Enhancer Decommissioning Program
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    Architectural Proteins and Pluripotency Factors Cooperate to Orchestrate the Transcriptional Response of hESCs to Temperature Stress
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    APD-Containing Cyclolipodepsipeptides Target Mitochondrial Function in Hypoxic Cancer Cells
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    Pseudouridylation of tRNA-Derived Fragments Steers Translational Control in Stem Cells
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    Cooperative Metabolic Adaptations in the Host Can Favor Asymptomatic Infection and Select for Attenuated Virulence in an Enteric Pathogen
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    Decoupling Yeast Cell Division and Stress Defense Implicates mRNA Repression in Translational Reallocation during Stress
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    Sensory Neuron Diversity in the Inner Ear Is Shaped by Activity
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    Hyaluronan Receptor LYVE-1-Expressing Macrophages Maintain Arterial Tone through Hyaluronan-Mediated Regulation of Smooth Muscle Cell Collagen
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    Diet-Induced Circadian Enhancer Remodeling Synchronizes Opposing Hepatic Lipid Metabolic Processes
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    Biology and Clinical Implications of the 19q13 Aggressive Prostate Cancer Susceptibility Locus
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  181. www.sciencedirect.com www.sciencedirect.com
    EZH2-Mediated Primary Cilium Deconstruction Drives Metastatic Melanoma Formation
    1
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  182. www.sciencedirect.com www.sciencedirect.com
    Evidence for a Non-leptin System that Defends against Weight Gain in Overfeeding
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  183. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Stable STIM1 Knockdown in Self-Renewing Human Neural Precursors Promotes Premature Neural Differentiation
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  184. www.sciencedirect.com www.sciencedirect.com
    Multiscale Analysis of Independent Alzheimer’s Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus
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  185. www.sciencedirect.com www.sciencedirect.com
    Inhibition of Methyltransferase Setd7 Allows the In Vitro Expansion of Myogenic Stem Cells with Improved Therapeutic Potential
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    Ultraconserved Enhancers Are Required for Normal Development
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  187. www.sciencedirect.com www.sciencedirect.com
    Arabidopsis Serrate Coordinates Histone Methyltransferases ATXR5/6 and RNA Processing Factor RDR6 to Regulate Transposon Expression
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  188. www.sciencedirect.com www.sciencedirect.com
    Hemodynamic Forces Sculpt Developing Heart Valves through a KLF2-WNT9B Paracrine Signaling Axis
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  189. www.sciencedirect.com www.sciencedirect.com
    Reactive Neutrophil Responses Dependent on the Receptor Tyrosine Kinase c-MET Limit Cancer Immunotherapy
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  190. www.sciencedirect.com www.sciencedirect.com
    Developmental Origin Governs CD8+ T Cell Fate Decisions during Infection
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  191. www.sciencedirect.com www.sciencedirect.com
    JMJD6 Licenses ERα-Dependent Enhancer and Coding Gene Activation by Modulating the Recruitment of the CARM1/MED12 Co-activator Complex
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  192. www.jneurosci.org www.jneurosci.org
    mTORC1 Is Transiently Reactivated in Injured Nerves to Promote c-Jun Elevation and Schwann Cell Dedifferentiation
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  193. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis
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  194. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Polycomb-Dependent Epigenome Controls β Cell Dysfunction, Dedifferentiation, and Diabetes
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  195. www.frontiersin.org www.frontiersin.org
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    frontiersin.org/article/10.3389/fnagi.2018.00102/full
  196. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  197. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Profound Tissue Specificity in Proliferation Control Underlies Cancer Drivers and Aneuploidy Patterns
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    ncbi.nlm.nih.gov/pmc/articles/PMC6643283/
  198. www.sciencedirect.com www.sciencedirect.com
    Different Neuronal Activity Patterns Induce Different Gene Expression Programs
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  199. academic.oup.com academic.oup.com
    Maser: one-stop platform for NGS big data from analysis to visualization
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    academic.oup.com/database/article/doi/10.1093/database/bay027/4970007
  200. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    BCG Educates Hematopoietic Stem Cells to Generate Protective Innate Immunity against Tuberculosis
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  203. europepmc.org europepmc.org
    Context-dependent deposition and regulation of mRNAs in P-bodies.
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    Artemether Does Not Turn α Cells into β Cells
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    Dichotomous Expression of TNF Superfamily Ligands on Antigen-Presenting Cells Controls Post-priming Anti-viral CD4+ T Cell Immunity
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  206. Nov 2017
  207. europepmc.org europepmc.org
    A tissue-specific, Gata6-driven transcriptional program instructs remodeling of the mature arterial tree.
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      Curator: @BlakeMcMurray

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  208. academic.oup.com academic.oup.com
    Transcriptional mapping of the primary somatosensory cortex upon sensory deprivation
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    academic.oup.com/gigascience/article/6/10/1/4091590/Transcriptional-mapping-of-the-primary
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    Role of the Astroglial Glutamate Exchanger xCT in Ventral Hippocampus in Resilience to Stress
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    Androgen Receptor Pathway-Independent Prostate Cancer Is Sustained through FGF Signaling
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    sciencedirect.com/science/article/pii/S1535610817304075
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    P-Body Purification Reveals the Condensation of Repressed mRNA Regulons
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  212. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The DREAM complex through its subunit Lin37 cooperates with Rb to initiate quiescence
    1
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      Curator: @patriciaelyse_

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    ncbi.nlm.nih.gov/pmc/articles/PMC5602299/
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    Aldosterone-Sensing Neurons in the NTS Exhibit State-Dependent Pacemaker Activity and Drive Sodium Appetite via Synergy with Angiotensin II Signaling
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    sciencedirect.com/science/article/pii/S0896627317308541
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    CTCF-Mediated Enhancer-Promoter Interaction Is a Critical Regulator of Cell-to-Cell Variation of Gene Expression
    1
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