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325 Matching Annotations

Jul 2022
academic.oup.com academic.oup.com

Manchurian Walnut Genome: Insights into Juglone and Lipid Biosynthesis

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1. scibot 06 Jul 2022
  
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  DOI: 10.1093/gigascience/giac057
  
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academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac057/6619298
Jun 2022
www.nature.com www.nature.com

KMT2C deficiency promotes small cell lung cancer metastasis through DNMT3A-mediated epigenetic reprogramming

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1. scibot 17 Jun 2022
  
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  DOI: 10.1038/s43018-022-00361-6
  
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nature.com/articles/s43018-022-00361-6
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EED is required for mouse primordial germ cell differentiation in the embryonic gonad

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1. scibot 09 Jun 2022
  
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  DOI: 10.1016/j.devcel.2022.05.012
  
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sciencedirect.com/science/article/pii/S1534580722003690
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JAZF1-SUZ12 dysregulates PRC2 function and gene expression during cell differentiation

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1. scibot 03 Jun 2022
  
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  DOI: 10.1016/j.celrep.2022.110889
  
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sciencedirect.com/science/article/pii/S2211124722006647
May 2022
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Leveraging Allele-Specific Expression for Therapeutic Response Gene Discovery in Glioblastoma

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1. scibot 24 May 2022
  
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  DOI: 10.1158/0008-5472.CAN-21-0810
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9122831/
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Sexually dimorphic RNA helicases DDX3X and DDX3Y differentially regulate RNA metabolism through phase separation

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1. scibot 19 May 2022
  
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  DOI: 10.1016/j.molcel.2022.04.022
  
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sciencedirect.com/science/article/pii/S1097276522003859
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Cytoplasmic proteotoxicity regulates HRI-dependent phosphorylation of eIF2α via the Hsp70-Bag3 module

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1. scibot 10 May 2022
  
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  DOI: 10.1016/j.isci.2022.104282
  
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sciencedirect.com/science/article/pii/S2589004222005521
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Intracellular infection and immune system cues rewire adipocytes to acquire immune function

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1. scibot 05 May 2022
  
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  DOI: 10.1016/j.cmet.2022.04.008
  
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sciencedirect.com/science/article/pii/S1550413122001358
Apr 2022
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Sex disparities in influenza: A multiscale network analysis

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1. scibot 21 Apr 2022
  
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  DOI: 10.1016/j.isci.2022.104192
  
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sciencedirect.com/science/article/pii/S258900422200462X
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TMPRSS2-ERG promotes the initiation of prostate cancer by suppressing oncogene-induced senescence

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1. scibot 12 Apr 2022
  
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  DOI: 10.1038/s41417-022-00454-5
  
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nature.com/articles/s41417-022-00454-5
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Transcriptional analysis of peripheral memory T cells reveals Parkinson’s disease-specific gene signatures

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1. scibot 12 Apr 2022
  
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  DOI: 10.1038/s41531-022-00282-2
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8938520/
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A high-quality assembly reveals genomic characteristics, phylogenetic status, and causal genes for leucism plumage of Indian peafowl

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1. scibot 09 Apr 2022
  
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  DOI: 10.1093/gigascience/giac018
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8985102/
aacrjournals.org aacrjournals.org

CIC-mediated modulation of MAPK signaling opposes receptor tyrosine kinase inhibitor response in kinase-addicted sarcoma

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1. scibot 05 Apr 2022
  
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  DOI: 10.1158/0008-5472.CAN-21-1397
  
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aacrjournals.org/cancerres/article/82/6/1110/682069/CIC-Mediated-Modulation-of-MAPK-Signaling-Opposes
Mar 2022
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Pathogen size alters C-type lectin receptor signaling in dendritic cells to influence CD4 Th9 cell differentiation

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1. scibot 30 Mar 2022
  
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  DOI: 10.1016/j.celrep.2022.110567
  
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sciencedirect.com/science/article/pii/S2211124722003114
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

A test of the pioneer factor hypothesis using ectopic liver gene activation

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1. scibot 04 Mar 2022
  
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  DOI: 10.7554/eLife.73358
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8849321/
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ZFTA-RELA Dictates Oncogenic Transcriptional Programs to Drive Aggressive Supratentorial Ependymoma

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1. scibot 04 Mar 2022
  
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  DOI: 10.1158/2159-8290.CD-20-1066
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8418998/
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Comprehensive transcriptomic analysis shows disturbed calcium homeostasis and deregulation of T lymphocyte apoptosis in inclusion body myositis

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1. scibot 03 Mar 2022
  
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  DOI: 10.1007/s00415-022-11029-7
  
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link.springer.com/article/10.1007/s00415-022-11029-7
Feb 2022
elifesciences.org elifesciences.org

FMRP regulates mRNAs encoding distinct functions in the cell body and dendrites of CA1 pyramidal neurons

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1. scibot 16 Feb 2022
  
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  DOI: 10.7554/eLife.71892
  
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elifesciences.org/articles/71892
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Genetic Liability for Internalizing Versus Externalizing Behavior Manifests in the Developing and Adult Hippocampus: Insight From a Meta-analysis of Transcriptional Profiling Studies in a Selectively Bred Rat Model

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1. scibot 16 Feb 2022
  
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  DOI: 10.1016/j.biopsych.2020.05.024
  
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ncbi.nlm.nih.gov/pmc/articles/PMC7704921/
Jan 2022
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Dynamic chromatin state profiling reveals regulatory roles of auxin and cytokinin in shoot regeneration

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1. scibot 27 Jan 2022
  
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  DOI: 10.1016/j.devcel.2021.12.019
  
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sciencedirect.com/science/article/pii/S153458072101039X
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Establishment of developmental gene silencing by ordered polycomb complex recruitment in early zebrafish embryos

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1. scibot 26 Jan 2022
  
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  DOI: 10.7554/eLife.67738
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8769650/
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Enhancer RNA Expression in Response to Glucocorticoid Treatment in Murine Macrophages

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1. scibot 12 Jan 2022
  
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  DOI: 10.3390/cells11010028
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8744892/
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Heat shock factor 1 (HSF1) cooperates with estrogen receptor α (ERα) in the regulation of estrogen action in breast cancer cells

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1. scibot 07 Jan 2022
  
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  DOI: 10.7554/eLife.69843
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8709578/
Dec 2021
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Parity-induced changes to mammary epithelial cells control NKT cell expansion and mammary oncogenesis

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1. scibot 08 Dec 2021
  
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  DOI: 10.1016/j.celrep.2021.110099
  
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sciencedirect.com/science/article/pii/S221112472101593X
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Relayed signaling between mesenchymal progenitors and muscle stem cells ensures adaptive stem cell response to increased mechanical load

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1. scibot 02 Dec 2021
  
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  DOI: 10.1016/j.stem.2021.11.003
  
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sciencedirect.com/science/article/pii/S1934590921004513
Nov 2021
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Kr-h1 maintains distinct caste-specific neurotranscriptomes in response to socially regulated hormones

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1. scibot 05 Nov 2021
  
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  DOI: 10.1016/j.cell.2021.10.006
  
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sciencedirect.com/science/article/pii/S0092867421011806
Oct 2021
www.embopress.org www.embopress.org

Reprogramming of glucocorticoid receptor function by hypoxia

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1. scibot 27 Oct 2021
  
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  DOI: 10.15252/embr.202153083
  
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embopress.org/doi/full/10.15252/embr.202153083
Sep 2021
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Muscle-secreted neurturin couples myofiber oxidative metabolism and slow motor neuron identity

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1. scibot 30 Sep 2021
  
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  DOI: 10.1016/j.cmet.2021.09.003
  
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sciencedirect.com/science/article/pii/S1550413121004228
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SATB2 preserves colon stem cell identity and mediates ileum-colon conversion via enhancer remodeling

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1. scibot 28 Sep 2021
  
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  DOI: 10.1016/j.stem.2021.09.004
  
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sciencedirect.com/science/article/pii/S1934590921003805
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Elevated transcription of transposable elements is accompanied by het-siRNA-driven de novo DNA methylation in grapevine embryogenic callus

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1. scibot 22 Sep 2021
  
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  DOI: 10.1186/s12864-021-07973-9
  
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link.springer.com/article/10.1186/s12864-021-07973-9
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Cardiac pathologies in mouse loss of imprinting models are due to misexpression of H19 long noncoding RNA

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1. scibot 14 Sep 2021
  
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  DOI: 10.7554/eLife.67250
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8425947/
Aug 2021
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An essential role for the piRNA pathway in regulating the ribosomal RNA pool in C. elegans

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1. scibot 16 Aug 2021
  
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  DOI: 10.1016/j.devcel.2021.07.014
  
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sciencedirect.com/science/article/pii/S1534580721005979
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Disruption of NEUROD2 causes a neurodevelopmental syndrome with autistic features via cell-autonomous defects in forebrain glutamatergic neurons

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1. scibot 16 Aug 2021
  
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  DOI: 10.1038/s41380-021-01179-x
  
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nature.com/articles/s41380-021-01179-x
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Heterogeneous disease-propagating stem cells in juvenile myelomonocytic leukemia

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1. scibot 15 Aug 2021
  
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  DOI: 10.1084/jem.20180853
  
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ncbi.nlm.nih.gov/pmc/articles/PMC7802370/
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The Polycomb-Dependent Epigenome Controls β Cell Dysfunction, Dedifferentiation, and Diabetes

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1. scibot 12 Aug 2021
  
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  DOI: 10.1016/j.cmet.2018.04.013
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5989056/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Lower Airway Dysbiosis Affects Lung Cancer Progression

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1. scibot 04 Aug 2021
  
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  DOI: 10.1158/2159-8290.CD-20-0263
  
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Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease

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Sustained expression of HeyL is critical for the proliferation of muscle stem cells in overloaded muscle

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Sex Differences in Adrenal Bmal1 Deletion-Induced Augmentation of Glucocorticoid Responses to Stress and ACTH in Mice

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Shear stress and oxygen availability drive differential changes in opossum kidney proximal tubule cell metabolism and endocytosis

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Ulcer‐associated cell lineage expresses genes involved in regeneration and is hallmarked by high neutrophil gelatinase‐associated lipocalin (NGAL) levels

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Transmembrane Protease TMPRSS11B Promotes Lung Cancer Growth by Enhancing Lactate Export and Glycolytic Metabolism

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Distinct Regulation of Th17 and Th1 Cell Differentiation by Glutaminase-Dependent Metabolism

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A single cell transcriptomics map of paracrine networks in the intrinsic cardiac nervous system

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Development and Characterization of Novel Endoxifen-Resistant Breast Cancer Cell Lines Highlight Numerous Differences from Tamoxifen-Resistant Models

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SIRT1 regulates sphingolipid metabolism and neural differentiation of mouse embryonic stem cells through c-Myc-SMPDL3B

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Nascent RNA antagonizes the interaction of a set of regulatory proteins with chromatin

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Type I interferon decreases macrophage energy metabolism during mycobacterial infection

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ZC3H4 restricts non-coding transcription in human cells

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Loss of Ambra1 promotes melanoma growth and invasion

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Dynamic profiles and transcriptional preferences of histone modifications during spermiogenesis

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Mesenchymal Niche-Derived Neuregulin-1 Drives Intestinal Stem Cell Proliferation and Regeneration of Damaged Epithelium

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Expression of the Neuronal tRNA n-Tr20 Regulates Synaptic Transmission and Seizure Susceptibility

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A single-cell analysis of the Arabidopsis vegetative shoot apex

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Chromatin Accessibility Dynamics and a Hierarchical Transcriptional Regulatory Network Structure for Plant Somatic Embryogenesis

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Defects in translation-dependent quality control pathways lead to convergent molecular and neurodevelopmental pathology

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Developmentally Programmed Tankyrase Activity Upregulates β-Catenin and Licenses Progression of Embryonic Genome Activation

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Erosion of human X chromosome inactivation causes major remodeling of the iPSC proteome

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A pan-cancer transcriptome analysis of exitron splicing identifies novel cancer driver genes and neoepitopes

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HAT cofactor TRRAP modulates microtubule dynamics via SP1 signaling to prevent neurodegeneration

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Post-transcriptional regulation of antiviral gene expression by N6-methyladenosine

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CD49f Is a Novel Marker of Functional and Reactive Human iPSC-Derived Astrocytes

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The RNA-binding protein SFPQ preserves long-intron splicing and regulates circRNA biogenesis in mammals

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Failures of nerve regeneration caused by aging or chronic denervation are rescued by restoring Schwann cell c-Jun

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Ecd promotes U5 snRNP maturation and Prp8 stability

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Protocol for assaying chromatin accessibility using ATAC-seq in plants

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Pituitary stem cells produce paracrine WNT signals to control the expansion of their descendant progenitor cells

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High neural activity accelerates the decline of cognitive plasticity with age in Caenorhabditis elegans

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CD49f Is a Novel Marker of Functional and Reactive Human iPSC-Derived Astrocytes

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GTPBP1 resolves paused ribosomes to maintain neuronal homeostasis

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TARGET-Seq: A Protocol for High-Sensitivity Single-Cell Mutational Analysis and Parallel RNA Sequencing

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ATR expands embryonic stem cell fate potential in response to replication stress

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Time-Course RNAseq Reveals Exserohilum turcicum Effectors and Pathogenicity Determinants

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PRL3-DDX21 Transcriptional Control of Endolysosomal Genes Restricts Melanocyte Stem Cell Differentiation

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C/EBPα and GATA-2 Mutations Induce Bilineage Acute Erythroid Leukemia through Transformation of a Neomorphic Neutrophil-Erythroid Progenitor

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Regulatory Dynamics of Tet1 and Oct4 Resolve Stages of Global DNA Demethylation and Transcriptomic Changes in Reprogramming

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Maturational Changes in Mouse Cutaneous Touch and Piezo2-Mediated Mechanotransduction

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Endogenous itaconate is not required for particulate matter-induced NRF2 expression or inflammatory response

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Activin A determines steroid levels and composition in the fetal testis

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Senescence-Induced Vascular Remodeling Creates Therapeutic Vulnerabilities in Pancreas Cancer

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Heterochromatin-Driven Nuclear Softening Protects the Genome against Mechanical Stress-Induced Damage

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Islet O-GlcNAcylation Is Required for Lipid Potentiation of Insulin Secretion through SERCA2

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Integrated Transcriptome and Network Analysis Reveals Spatiotemporal Dynamics of Calvarial Suturogenesis

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Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease

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NuRD subunit CHD4 regulates super-enhancer accessibility in rhabdomyosarcoma and represents a general tumor dependency

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Transcriptional Correlates of Tolerance and Lethality in Mice Predict Ebola Virus Disease Patient Outcomes

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Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury

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CNGA3 acts as a cold sensor in hypothalamic neurons

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Mechanisms of Progression of Myeloid Preleukemia to Transformed Myeloid Leukemia in Children with Down Syndrome

1
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Lmx1b is required at multiple stages to build expansive serotonergic axon architectures

1
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Adipocyte Hypoxia-Inducible Factor 2α Suppresses Atherosclerosis by Promoting Adipose Ceramide Catabolism

1
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Conversion of random X-inactivation to imprinted X-inactivation by maternal PRC2

1
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Oligodendrocyte Intrinsic miR-27a Controls Myelination and Remyelination

1
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FMRP has a cell-type-specific role in CA1 pyramidal neurons to regulate autism-related transcripts and circadian memory

1
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Untitled document

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A Cross-Species Analysis Reveals a General Role for Piezo2 in Mechanosensory Specialization of Trigeminal Ganglia from Tactile Specialist Birds

1
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Monocyte-Derived CD11c+ Cells Acquire Plasmodium from Hepatocytes to Prime CD8 T Cell Immunity to Liver-Stage Malaria

1
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Maternal Ribosomes Are Sufficient for Tissue Diversification during Embryonic Development in C. elegans

1
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Unravelling Intratumoral Heterogeneity through High-Sensitivity Single-Cell Mutational Analysis and Parallel RNA Sequencing

1
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Histone Deacetylases 1 and 2 Regulate Microglia Function during Development, Homeostasis, and Neurodegeneration in a Context-Dependent Manner

1
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Untitled document

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LC3-Associated Phagocytosis in Myeloid Cells Promotes Tumor Immune Tolerance

1
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Suppression of Plant Immunity by Fungal Chitinase-like Effectors

1
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Transcription Elongation Can Affect Genome 3D Structure

1
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Decoupling the impact of microRNAs on translational repression versus RNA degradation in embryonic stem cells

1
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elifesciences.org/articles/38014
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Sensory Neuron Diversity in the Inner Ear Is Shaped by Activity

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1. scibot 05 Nov 2018
  
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3D Culture Method for Alzheimer's Disease Modeling Reveals Interleukin-4 Rescues Aβ42-Induced Loss of Human Neural Stem Cell Plasticity

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1. scibot 05 Nov 2018
  
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sciencedirect.com/science/article/pii/S1534580718304593
elifesciences.org elifesciences.org

A transcriptomics resource reveals a transcriptional transition during ordered sarcomere morphogenesis in flight muscle

1
1. scibot 05 Nov 2018
  
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  Curator: @evieth
  
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elifesciences.org/articles/34058
www.jneurosci.org www.jneurosci.org

A Central Extended Amygdala Circuit That Modulates Anxiety

1
1. scibot 05 Nov 2018
  
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jneurosci.org/content/38/24/5567
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Developmental Origin Governs CD8+ T Cell Fate Decisions during Infection

1
1. scibot 05 Nov 2018
  
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sciencedirect.com/science/article/pii/S009286741830641X
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Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis

1
1. scibot 05 Nov 2018
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5946861/
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The Polycomb-Dependent Epigenome Controls β Cell Dysfunction, Dedifferentiation, and Diabetes

1
1. scibot 05 Nov 2018
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5989056/
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Artemether Does Not Turn α Cells into β Cells

1
1. scibot 05 Nov 2018
  
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sciencedirect.com/science/article/pii/S1550413117306149
Nov 2017
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Aldosterone-Sensing Neurons in the NTS Exhibit State-Dependent Pacemaker Activity and Drive Sodium Appetite via Synergy with Angiotensin II Signaling

1
1. scibot 08 Nov 2017
  
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sciencedirect.com/science/article/pii/S0896627317308541
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Interferon-γ Represses M2 Gene Expression in Human Macrophages by Disassembling Enhancers Bound by the Transcription Factor MAF

1
1. scibot 08 Nov 2017
  
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sciencedirect.com/science/article/pii/S1074761317303242
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CRISPR/Cas9 Screens Reveal Epstein-Barr Virus-Transformed B Cell Host Dependency Factors

1
1. scibot 08 Nov 2017
  
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The RNA Exosome Syncs IAV-RNAPII Transcription to Promote Viral Ribogenesis and Infectivity

1
1. scibot 08 Nov 2017
  
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Multiplexed Engineering and Analysis of Combinatorial Enhancer Activity in Single Cells

1
1. scibot 08 Nov 2017
  
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Transcriptional Dependencies in Diffuse Intrinsic Pontine Glioma

1
1. scibot 08 Nov 2017
  
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Virgin Beta Cells Persist throughout Life at a Neogenic Niche within Pancreatic Islets

1
1. scibot 08 Nov 2017
  
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CpG Island Hypermethylation Mediated by DNMT3A Is a Consequence of AML Progression

1
1. scibot 08 Nov 2017
  
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Nuclear RNA Decay Pathways Aid Rapid Remodeling of Gene Expression in Yeast

1
1. scibot 08 Nov 2017
  
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Mitochondrial respiratory gene expression is suppressed in many cancers

1
1. scibot 08 Nov 2017
  
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  Curator: @Zeljana_Babic
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5243113/
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Cell culture-based profiling across mammals reveals DNA repair and metabolism as determinants of species longevity

1
1. scibot 08 Nov 2017
  
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elifesciences.org/articles/19130

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