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May 2021
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Repetitive Elements Trigger RIG-I-like Receptor Signaling that Regulates the Emergence of Hematopoietic Stem and Progenitor Cells

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A Prion-like Domain in Transcription Factor EBF1 Promotes Phase Separation and Enables B Cell Programming of Progenitor Chromatin

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Chromatin Accessibility Dynamics and a Hierarchical Transcriptional Regulatory Network Structure for Plant Somatic Embryogenesis

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Transcription factor chromatin profiling genome-wide using uliCUT&RUN in single cells and individual blastocysts

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Apr 2021
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Self-Reporting Transposons Enable Simultaneous Readout of Gene Expression and Transcription Factor Binding in Single Cells

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Impact of chromatin context on Cas9-induced DNA double-strand break repair pathway balance

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ncbi.nlm.nih.gov/pmc/articles/PMC8153251/
Mar 2021
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Human ORC/MCM density is low in active genes and correlates with replication time but does not delimit initiation zones

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Post-transcriptional regulation of antiviral gene expression by N6-methyladenosine

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Feb 2021
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Beta-catenin signaling regulates barrier-specific gene expression in circumventricular organ and ocular vasculatures

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The corepressors GPS2 and SMRT control enhancer and silencer remodeling via eRNA transcription during inflammatory activation of macrophages

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Dimerisation of the PICTS complex via LC8/Cut-up drives co-transcriptional transposon silencing in Drosophila

1
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The glucocorticoid receptor recruits the COMPASS complex to regulate inflammatory transcription at macrophage enhancers

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Jan 2021
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Protocol for assaying chromatin accessibility using ATAC-seq in plants

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Re-expression of SMARCA4/BRG1 in small cell carcinoma of ovary, hypercalcemic type (SCCOHT) promotes an epithelial-like gene signature through an AP-1-dependent mechanism

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ncbi.nlm.nih.gov/pmc/articles/PMC7813545/
Sep 2020
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Binding of the Treslin-MTBP Complex to Specific Regions of the Human Genome Promotes the Initiation of DNA Replication

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Amplification of a broad transcriptional program by a common factor triggers the meiotic cell cycle in mice

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  DOI: 10.7554/eLife.43738
  
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Lactate production by Staphylococcus aureus biofilm inhibits HDAC11 to reprogramme the host immune response during persistent infection

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  DOI: 10.1038/s41564-020-0756-3
  
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Recruitment of mRNAs to P granules by condensation with intrinsically-disordered proteins

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ncbi.nlm.nih.gov/pmc/articles/PMC7007223/
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A genome-wide view of the de-differentiation of central nervous system endothelial cells in culture

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Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding

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Parvovirus Minute Virus of Mice Interacts with Sites of Cellular DNA Damage to Establish and Amplify its Lytic Infection

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The testis protein ZNF165 is a SMAD3 cofactor that coordinates oncogenic TGFβ signaling in triple-negative breast cancer

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INO80C Remodeler Maintains Genomic Stability by Preventing Promiscuous Transcription at Replication Origins

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Genomic Rewiring of SOX2 Chromatin Interaction Network during Differentiation of ESCs to Postmitotic Neurons

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Repressive H3K9me2 protects lifespan against the transgenerational burden of COMPASS activity in C. elegans

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Umbilical cord blood-derived ILC1-like cells constitute a novel precursor for mature KIR+NKG2A- NK cells

1
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Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains

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  DOI: 10.1016/j.molcel.2018.11.006
  
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cell.com/molecular-cell/abstract/S1097-2765(18)30948-1
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Sphingosine 1-phosphate-regulated transcriptomes in heterogenous arterial and lymphatic endothelium of the aorta

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Analysis of zebrafish periderm enhancers facilitates identification of a regulatory variant near human KRT8/18

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ncbi.nlm.nih.gov/pmc/articles/PMC7039683/
Jan 2020
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Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle

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ncbi.nlm.nih.gov/pmc/articles/PMC6890464/
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CoBATCH for High-Throughput Single-Cell Epigenomic Profiling

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  DOI: 10.1016/j.molcel.2019.07.015
  
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The Ovulatory Signal Precipitates LRH-1 Transcriptional Switching Mediated by Differential Chromatin Accessibility

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  DOI: 10.1016/j.celrep.2019.07.088
  
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RNA Interactions Are Essential for CTCF-Mediated Genome Organization

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Tau-Mediated Disruption of the Spliceosome Triggers Cryptic RNA Splicing and Neurodegeneration in Alzheimer’s Disease

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Genome-wide Analyses of Chromatin State in Human Mast Cells Reveal Molecular Drivers and Mediators of Allergic and Inflammatory Diseases

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Genome-wide analysis of the H3K27me3 epigenome and transcriptome in Brassica rapa

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  DOI: 10.1093/gigascience/giz147
  
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Recurrent SMARCB1 Mutations Reveal a Nucleosome Acidic Patch Interaction Site That Potentiates mSWI/SNF Complex Chromatin Remodeling

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  DOI: 10.1016/j.cell.2019.10.044
  
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Quantification of Differential Transcription Factor Activity and Multiomics-Based Classification into Activators and Repressors: diffTF

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  DOI: 10.1016/j.celrep.2019.10.106
  
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Distinct Classes of Chromatin Loops Revealed by Deletion of an RNA-Binding Region in CTCF

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  DOI: 10.1016/j.molcel.2019.07.039
  
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Yeast Sirtuin Family Members Maintain Transcription Homeostasis to Ensure Genome Stability

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  DOI: 10.1016/j.celrep.2019.05.009
  
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  DOI: 10.1016/j.molcel.2018.11.006
  
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  DOI: 10.7554/eLife.43257
  
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De Novo PITX1 Expression Controls Bi-Stable Transcriptional Circuits to Govern Self-Renewal and Differentiation in Squamous Cell Carcinoma

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1. scibot 12 Jan 2020
  
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  DOI: 10.1016/j.stem.2019.01.003
  
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  DOI: 10.7554/eLife.43738
  
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Elongation/Termination Factor Exchange Mediated by PP1 Phosphatase Orchestrates Transcription Termination

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HOXA9 Reprograms the Enhancer Landscape to Promote Leukemogenesis

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Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate

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Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells

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Disease-Associated Short Tandem Repeats Co-localize with Chromatin Domain Boundaries

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Epigenetic and Transcriptomic Profiling of Mammary Gland Development and Tumor Models Disclose Regulators of Cell State Plasticity

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