175 Matching Annotations
  1. Apr 2024
  2. www.sciencedirect.com www.sciencedirect.com
    A senescence restriction point acting on chromatin integrates oncogenic signals
    1
    1. scibot 04 Apr 2024
      RRID:SCR_016366

      DOI: 10.1016/j.celrep.2024.114044

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    sciencedirect.com/science/article/pii/S2211124724003723
  3. Mar 2024
  4. link.springer.com link.springer.com
    From degraded to deciphered: ATAC-seq’s application potential in forensic diagnosis
    1
    1. scibot 19 Mar 2024
      RRID:SCR_016366

      DOI: 10.1007/s00414-024-03206-2

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    link.springer.com/article/10.1007/s00414-024-03206-2
  5. Feb 2024
  6. 52.53.155.43 52.53.155.43
    can-23-1129-html.html
    1
    1. scibot 23 Feb 2024
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      DOI: 10.1158/0008-5472.can-23-1129

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    52.53.155.43/f18faff86a38ad159824c95dcf032e1a8bb0e968/133-html.html
  7. www.biorxiv.org www.biorxiv.org
    A Mutation-driven oncofetal regression fuels phenotypic plasticity in colorectal cancer
    1
    1. scibot 09 Feb 2024
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      DOI: 10.1101/2023.12.10.570854

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    biorxiv.org/content/10.1101/2023.12.10.570854v1
  8. link.springer.com link.springer.com
    The androgen receptor interacts with GATA3 to transcriptionally regulate a luminal epithelial cell phenotype in breast cancer
    1
    1. scibot 07 Feb 2024
      RRID:SCR_016366

      DOI: 10.1186/s13059-023-03161-y

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    link.springer.com/article/10.1186/s13059-023-03161-y
  9. Jan 2024
  10. www.nature.com www.nature.com
    Cell-type-directed design of synthetic enhancers
    1
    1. scibot 25 Jan 2024
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      DOI: 10.1038/s41586-023-06936-2

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    nature.com/articles/s41586-023-06936-2
  11. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    PRDM3/16 Regulate Chromatin Accessibility Required for NKX2-1 Mediated Alveolar Epithelial Differentiation and Function
    1
    1. scibot 20 Jan 2024
      RRID:SCR_016366

      DOI: 10.1101/2023.12.20.570481

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    ncbi.nlm.nih.gov/pmc/articles/PMC10769259/
  12. www.sciencedirect.com www.sciencedirect.com
    Inherited blood cancer predisposition through altered transcription elongation
    1
    1. scibot 19 Jan 2024
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      DOI: 10.1016/j.cell.2023.12.016

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    sciencedirect.com/science/article/pii/S009286742301348X
  13. www.science.org www.science.org
    Temporal landscape of mitochondrial proteostasis governed by the UPRmt
    1
    1. scibot 12 Jan 2024
      RRID: SCR_016366

      DOI: 10.1126/sciadv.adh8228

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    science.org/doi/10.1126/sciadv.adh8228
  14. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    β-catenin-driven differentiation is a tissue-specific epigenetic vulnerability in adrenal cancer
    1
    1. scibot 10 Jan 2024
      RRID:SCR_016366

      DOI: 10.1158/0008-5472.CAN-22-2712

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    ncbi.nlm.nih.gov/pmc/articles/PMC10330305/
  15. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multi-omics integration identifies cell-state-specific repression by PBRM1-PIAS1 cooperation
    1
    1. scibot 06 Jan 2024
      RRID: SCR_016366

      DOI: 10.1016/j.xgen.2023.100471

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    ncbi.nlm.nih.gov/pmc/articles/PMC10794847/
  16. www.sciencedirect.com www.sciencedirect.com
    Mitochondrial isocitrate dehydrogenase impedes CAR T cell function by restraining antioxidant metabolism and histone acetylation
    1
    1. scibot 06 Jan 2024
      RRID:SCR_016366

      DOI: 10.1016/j.cmet.2023.12.010

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    sciencedirect.com/science/article/pii/S1550413123004618
  17. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Leveraging tissue-specific enhancer-target gene regulatory networks identifies enhancer somatic mutations that functionally impact lung cancer
    1
    1. scibot 05 Jan 2024
      RRID:SCR_016366

      DOI: 10.1158/0008-5472.CAN-23-1129

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    ncbi.nlm.nih.gov/pmc/articles/PMC10758689/
  18. Dec 2023
  19. www.sciencedirect.com www.sciencedirect.com
    Pluripotency state transition of embryonic stem cells requires the turnover of histone chaperone FACT on chromatin
    1
    1. scibot 21 Dec 2023
      RRID:SCR_016366

      DOI: 10.1016/j.isci.2023.108537

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    sciencedirect.com/science/article/pii/S2589004223026147
  20. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Blimp-1 and c-Maf regulate  Il10 and negatively regulate common and unique proinflammatory gene networks in IL-12 plus IL-27-driven T helper-1 cells
    1
    1. scibot 13 Dec 2023
      RRID:SCR_016366

      DOI: 10.12688/wellcomeopenres.19680.2

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    ncbi.nlm.nih.gov/pmc/articles/PMC10709690/
  21. www.sciencedirect.com www.sciencedirect.com
    Single-cell transcriptomics of human traumatic brain injury reveals activation of endogenous retroviruses in oligodendroglia
    1
    1. scibot 02 Dec 2023
      RRID:SCR_016366

      DOI: 10.1016/j.celrep.2023.113395

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    sciencedirect.com/science/article/pii/S2211124723014079
  22. 52.53.155.43 52.53.155.43
    can-23-1129-html.html
    1
    1. scibot 01 Dec 2023
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      DOI: 10.1158/0008-5472.can-23-1129

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    52.53.155.43/f18faff86a38ad159824c95dcf032e1a8bb0e968/133-html.html
  23. Nov 2023
  24. www.nature.com www.nature.com
    Selective inhibition of CDK9 in triple negative breast cancer
    1
    1. scibot 25 Nov 2023
      RRID:SCR_016366

      DOI: 10.1038/s41388-023-02892-3

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    nature.com/articles/s41388-023-02892-3
  25. www.nature.com www.nature.com
    Repression of LSD1 potentiates homologous recombination-proficient ovarian cancer to PARP inhibitors through down-regulation of BRCA1/2 and RAD51
    1
    1. scibot 25 Nov 2023
      RRID:SCR_016366

      DOI: 10.1038/s41467-023-42850-x

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    nature.com/articles/s41467-023-42850-x
  26. www.science.org www.science.org
    LINE-1 retrotransposons drive human neuronal transcriptome complexity and functional diversification
    1
    1. scibot 17 Nov 2023
      RRID:SCR_016366

      DOI: 10.1126/sciadv.adh9543

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    science.org/doi/10.1126/sciadv.adh9543
  27. wellcomeopenresearch.org wellcomeopenresearch.org
    Blimp-1 and c-Maf regulate Il10 and negatively regulate common and unique proinflammatory gene networks in IL-12 plus IL-27-driven T helper-1 cells
    1
    1. scibot 10 Nov 2023
      RRID:SCR_016366

      DOI: 10.12688/wellcomeopenres.19680.1

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    wellcomeopenresearch.org/articles/8-403/v1
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    LINE-1 retrotransposons drive human neuronal transcriptome complexity and functional diversification
    1
    1. scibot 03 Nov 2023
      RRID:SCR_016366

      DOI: 10.1126/sciadv.adh9543

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    ncbi.nlm.nih.gov/pmc/articles/PMC10619931/
  29. www.sciencedirect.com www.sciencedirect.com
    Active maintenance of CD8+ T cell naivety through regulation of global genome architecture
    1
    1. scibot 02 Nov 2023
      RRID:SCR_016366

      DOI: 10.1016/j.celrep.2023.113301

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    sciencedirect.com/science/article/pii/S221112472301313X
  30. Oct 2023
  31. www.sciencedirect.com www.sciencedirect.com
    Loss of succinyl-CoA synthetase in mouse forebrain results in hypersuccinylation with perturbed neuronal transcription and metabolism
    1
    1. scibot 28 Oct 2023
      SCR_016366

      DOI: 10.1016/j.celrep.2023.113241

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    sciencedirect.com/science/article/pii/S2211124723012536
  32. www.sciencedirect.com www.sciencedirect.com
    Three-dimensional genome architecture coordinates key regulators of lineage specification in mammary epithelial cells
    1
    1. scibot 27 Oct 2023
      RRID:SCR_016366

      DOI: 10.1016/j.xgen.2023.100424

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    sciencedirect.com/science/article/pii/S2666979X23002501
  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Super-enhancer hijacking drives ectopic expression of hedgehog pathway ligands in meningiomas
    1
    1. scibot 12 Oct 2023
      RRID:SCR_016366

      DOI: 10.1038/s41467-023-41926-y

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    ncbi.nlm.nih.gov/pmc/articles/PMC10560290/
  34. www.nature.com www.nature.com
    TET2 lesions enhance the aggressiveness of CEBPA-mutant acute myeloid leukemia by rebalancing GATA2 expression
    1
    1. scibot 06 Oct 2023
      RRID:SCR_016366

      DOI: 10.1038/s41467-023-41927-x

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    nature.com/articles/s41467-023-41927-x
  35. Sep 2023
  36. www.science.org www.science.org
    Temporal landscape of mitochondrial proteostasis governed by the UPRmt
    1
    1. scibot 27 Sep 2023
      RRID:SCR_016366

      DOI: 10.1126/sciadv.adh8228

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    science.org/doi/10.1126/sciadv.adh8228
  37. Aug 2023
  38. 52.53.155.43 52.53.155.43
    Homeostatic PD-1 signaling restrains EOMES-dependent oligoclonal expansion of liver-resident CD8 T cells
    2
    1. scibot 12 Aug 2023
      RRID:SCR_016366

      DOI: 10.1016/j.celrep.2023.112876

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    2. scibot 10 Aug 2023
      RRID:SCR_016366

      DOI: 10.1016/j.celrep.2023.112876

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    52.53.155.43/7d9bf3333b9425342ca4204697d643342388db9f/PIIS2211124723008872-html.html
  39. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Histone variants shape chromatin states in Arabidopsis
    1
    1. scibot 03 Aug 2023
      RRID:SCR_016366

      DOI: 10.7554/eLife.87714

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    ncbi.nlm.nih.gov/pmc/articles/PMC10393023/
  40. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Inhibition of DNMT1 methyltransferase activity via glucose-regulated O-GlcNAcylation alters the epigenome
    1
    1. scibot 02 Aug 2023
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      DOI: 10.7554/eLife.85595

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    ncbi.nlm.nih.gov/pmc/articles/PMC10390045/
  41. Jul 2023
  42. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Low-level repressive histone marks fine-tune gene transcription in neural stem cells
    1
    1. scibot 15 Jul 2023
      RRID:SCR_016366

      DOI: 10.7554/eLife.86127

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    ncbi.nlm.nih.gov/pmc/articles/PMC10344426/
  43. Jun 2023
  44. 52.53.155.43 52.53.155.43
    can-22-2712-html.html
    1
    1. scibot 29 Jun 2023
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      DOI: 10.1158/0008-5472.CAN-22-2712

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    52.53.155.43/726555d37fadfa1ef429cf94df3437d3f13c8b94/can-22-2712-html.html
  45. www.embopress.org www.embopress.org
    DOT1L bridges transcription and heterochromatin formation at mammalian pericentromeres
    1
    1. scibot 22 Jun 2023
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      DOI: 10.15252/embr.202256492

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    embopress.org/doi/10.15252/embr.202256492
  46. www.sciencedirect.com www.sciencedirect.com
    5-Azacytidine- and retinoic-acid-induced reprogramming of DCCs into dormancy suppresses metastasis via restored TGF-β-SMAD4 signaling
    1
    1. scibot 02 Jun 2023
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      DOI: 10.1016/j.celrep.2023.112560

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    sciencedirect.com/science/article/pii/S2211124723005715
  47. May 2023
  48. onlinelibrary.wiley.com onlinelibrary.wiley.com
    KMT2D Deficiency Promotes Myeloid Leukemias which Is Vulnerable to Ribosome Biogenesis Inhibition
    1
    1. scibot 10 May 2023
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      DOI: 10.1002/advs.202206098

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    onlinelibrary.wiley.com/doi/10.1002/advs.202206098
  49. www.biorxiv.org www.biorxiv.org
    L1 retrotransposons drive human neuronal transcriptome complexity and functional diversification
    1
    1. scibot 04 May 2023
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      DOI: 10.1101/2023.03.04.531072

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    biorxiv.org/content/10.1101/2023.03.04.531072v1
  50. www.sciencedirect.com www.sciencedirect.com
    Functional interplay between Mediator and RSC chromatin remodeling complex controls nucleosome-depleted region maintenance at promoters
    1
    1. scibot 03 May 2023
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      DOI: 10.1016/j.celrep.2023.112465

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    sciencedirect.com/science/article/pii/S221112472300476X
  51. Apr 2023
  52. www.sciencedirect.com www.sciencedirect.com
    A hyper-quiescent chromatin state formed during aging is reversed by regeneration
    1
    1. scibot 29 Apr 2023
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      DOI: 10.1016/j.molcel.2023.04.005

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    sciencedirect.com/science/article/pii/S1097276523002496
  53. www.sciencedirect.com www.sciencedirect.com
    Novel enhancers conferring compensatory transcriptional regulation of Nkx2-5 in heart development
    1
    1. scibot 21 Apr 2023
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      DOI: 10.1016/j.isci.2023.106509

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    sciencedirect.com/science/article/pii/S2589004223005862
  54. www.sciencedirect.com www.sciencedirect.com
    INTAC endonuclease and phosphatase modules differentially regulate transcription by RNA polymerase II
    1
    1. scibot 20 Apr 2023
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      DOI: 10.1016/j.molcel.2023.03.022

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    Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia
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    Active maintenance of CD8+ T cell naïvety through regulation of global genome architecture
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    Histone phosphorylation integrates the hepatic glucagon-PKA-CREB gluconeogenesis program in response to fasting
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  58. Mar 2023
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    Epigenetic dosage identifies two major and functionally distinct β cell subtypes
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    Stepwise activities of mSWI/SNF family chromatin remodeling complexes direct T cell activation and exhaustion
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    Expression of down-regulated ERV LTR elements associates with immune activation in human small-cell lung cancers
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  63. Feb 2023
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    The BRD4 inhibitor JQ1 augments the antitumor efficacy of abemaciclib in preclinical models of gastric carcinoma
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    Loss of PBRM1 alters promoter histone modifications and activates ALDH1A1 to drive renal cell carcinoma
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    Centromeres as universal hotspots of DNA breakage, driving RAD51-mediated recombination during quiescence
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    Stem cell plasticity, acetylation of H3K14, and de novo gene activation rely on KAT7
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    PRC2 Inactivating Mutations in Cancer Enhance Cytotoxic Response to DNMT1 Targeted Therapy via Enhanced Viral Mimicry
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  70. Dec 2022
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    BAF complex maintains glioma stem cells in pediatric H3K27M-glioma
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  72. Nov 2022
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    Tip60-mediated H2A.Z acetylation promotes neuronal fate specification and bivalent gene activation
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    Essential role of MESP1-RING1A complex in cardiac differentiation
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    Transcription factor antagonism regulates heterogeneity in embryonic stem cell states
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    BioViz Connect: Web Application Linking CyVerse Cloud Resources to Genomic Visualization in the Integrated Genome Browser
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    FOXR2 is an epigenetically regulated pan-cancer oncogene that activates ETS transcriptional circuits
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  78. Sep 2022
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    Acquired semi-squamatization during chemotherapy suggests differentiation as a therapeutic strategy for bladder cancer
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    STAG2 promotes the myelination transcriptional program in oligodendrocytes
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    The human mitochondrial genome contains a second light strand promoter
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    Intracellular cholesterol pools regulate oncogenic signaling and epigenetic circuitries in Early T-cell Precursor Acute Lymphoblastic Leukemia
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    Npas3 deficiency impairs cortical astrogenesis and induces autistic-like behaviors
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    SMNDC1 links chromatin remodeling and splicing to regulate pancreatic hormone expression
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    TOP1 CAD-seq: A protocol to map catalytically engaged topoisomerase 1 in human cells
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    Transcription Elongation Machinery Is a Druggable Dependency and Potentiates Immunotherapy in Glioblastoma Stem Cells
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  89. Jun 2022
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  91. www.nature.com www.nature.com
    KMT2C deficiency promotes small cell lung cancer metastasis through DNMT3A-mediated epigenetic reprogramming
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    Direct epitranscriptomic regulation of mammalian translation initiation through N4-acetylcytidine
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    JAZF1-SUZ12 dysregulates PRC2 function and gene expression during cell differentiation
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    Oct4 differentially regulates chromatin opening and enhancer transcription in pluripotent stem cells
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  95. May 2022
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    Intracellular infection and immune system cues rewire adipocytes to acquire immune function
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  97. Apr 2022
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    RPAP2 regulates a transcription initiation checkpoint by inhibiting assembly of pre-initiation complex
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    An adult-stage transcriptional program for survival of serotonergic connectivity
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    HNF4A modulates glucocorticoid action in the liver
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    GFI1 cooperates with IKZF1/IKAROS to activate gene expression in T-cell acute lymphoblastic leukemia
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    Presence of H3K4me3 on Paternally Expressed Genes of the Paternal Genome From Sperm to Implantation
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  103. Mar 2022
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    A test of the pioneer factor hypothesis using ectopic liver gene activation
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      DOI: 10.7554/eLife.73358

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    ZFTA-RELA Dictates Oncogenic Transcriptional Programs to Drive Aggressive Supratentorial Ependymoma
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    Metabolic incorporation of electron-rich ribonucleosides enhances APEX-seq for profiling spatially restricted nascent transcriptome
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  107. Feb 2022
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    Simultaneous cellular and molecular phenotyping of embryonic mutants using single-cell regulatory trajectories
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    SPARCLE, a p53-induced lncRNA, controls apoptosis after genotoxic stress by promoting PARP-1 cleavage
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  110. Jan 2022
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    Dynamic chromatin state profiling reveals regulatory roles of auxin and cytokinin in shoot regeneration
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    Establishment of developmental gene silencing by ordered polycomb complex recruitment in early zebrafish embryos
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    Multimodal regulatory elements within a hormone-specific super enhancer control a heterogeneous transcriptional response
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    Enhancer RNA Expression in Response to Glucocorticoid Treatment in Murine Macrophages
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    Heat shock factor 1 (HSF1) cooperates with estrogen receptor α (ERα) in the regulation of estrogen action in breast cancer cells
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  116. Dec 2021
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    piRNAs initiate transcriptional silencing of spermatogenic genes during C. elegans germline development
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  119. Nov 2021
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    Topoisomerase 1 activity during mitotic transcription favors the transition from mitosis to G1
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    Acsbg1-dependent mitochondrial fitness is a metabolic checkpoint for tissue Treg cell homeostasis
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    Identification of a novel FUS/ETV4 fusion and comparative analysis with other Ewing sarcoma fusion proteins
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    Sequence features of retrotransposons allow for epigenetic variability
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    Acute depletion of the ARID1A subunit of SWI/SNF complexes reveals distinct pathways for activation and repression of transcription
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  126. Oct 2021
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    DREAM represses distinct targets by cooperating with different THAP domain proteins
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    Effects of sheared chromatin length on ChIP-seq quality and sensitivity
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    Global chromatin relabeling accompanies spatial inversion of chromatin in rod photoreceptors
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  130. Sep 2021
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    Global chromatin relabeling accompanies spatial inversion of chromatin in rod photoreceptors
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    H3K4 di-methylation governs smooth muscle lineage identity and promotes vascular homeostasis by restraining plasticity
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    SATB2 preserves colon stem cell identity and mediates ileum-colon conversion via enhancer remodeling
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    SPT5 stabilizes RNA polymerase II, orchestrates transcription cycles, and maintains the enhancer landscape
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  135. Aug 2021
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    Epigenomic and transcriptional profiling identifies impaired glyoxylate detoxification in NAFLD as a risk factor for hyperoxaluria
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    Genome-wide and sister chromatid-resolved profiling of protein occupancy in replicated chromatin with ChOR-seq and SCAR-seq
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  139. Jul 2021
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    Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database
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    Toxoplasma gondii infection drives conversion of NK cells into ILC1-like cells
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    Epigenetic Compensation Promotes Liver Regeneration
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    PI3K Inhibition Activates SGK1 via a Feedback Loop to Promote Chromatin-Based Regulation of ER-Dependent Gene Expression
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    BET Inhibition Induces HEXIM1- and RAD51-Dependent Conflicts between Transcription and Replication
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    Deregulated Expression of Mammalian lncRNA through Loss of SPT6 Induces R-Loop Formation, Replication Stress, and Cellular Senescence
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    Acetylation of Cytidine in mRNA Promotes Translation Efficiency
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    Targeted protein degradation reveals a direct role of SPT6 in RNAPII elongation and termination
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  148. Jun 2021
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    Nascent RNA antagonizes the interaction of a set of regulatory proteins with chromatin
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    Protocol for using heterologous spike-ins to normalize for technical variation in chromatin immunoprecipitation
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  151. May 2021
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    Non-canonical Targets of HIF1a Impair Oligodendrocyte Progenitor Cell Function
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    Repetitive Elements Trigger RIG-I-like Receptor Signaling that Regulates the Emergence of Hematopoietic Stem and Progenitor Cells
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    A Prion-like Domain in Transcription Factor EBF1 Promotes Phase Separation and Enables B Cell Programming of Progenitor Chromatin
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    Chromatin Accessibility Dynamics and a Hierarchical Transcriptional Regulatory Network Structure for Plant Somatic Embryogenesis
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  158. Apr 2021
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    Self-Reporting Transposons Enable Simultaneous Readout of Gene Expression and Transcription Factor Binding in Single Cells
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    Impact of chromatin context on Cas9-induced DNA double-strand break repair pathway balance
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    Human ORC/MCM density is low in active genes and correlates with replication time but does not delimit initiation zones
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    Post-transcriptional regulation of antiviral gene expression by N6-methyladenosine
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  164. Feb 2021
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    Beta-catenin signaling regulates barrier-specific gene expression in circumventricular organ and ocular vasculatures
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    The corepressors GPS2 and SMRT control enhancer and silencer remodeling via eRNA transcription during inflammatory activation of macrophages
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    Dimerisation of the PICTS complex via LC8/Cut-up drives co-transcriptional transposon silencing in Drosophila
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    The glucocorticoid receptor recruits the COMPASS complex to regulate inflammatory transcription at macrophage enhancers
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    Re-expression of SMARCA4/BRG1 in small cell carcinoma of ovary, hypercalcemic type (SCCOHT) promotes an epithelial-like gene signature through an AP-1-dependent mechanism
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  172. Sep 2020
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    Binding of the Treslin-MTBP Complex to Specific Regions of the Human Genome Promotes the Initiation of DNA Replication
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    Amplification of a broad transcriptional program by a common factor triggers the meiotic cell cycle in mice
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    Lactate production by Staphylococcus aureus biofilm inhibits HDAC11 to reprogramme the host immune response during persistent infection
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    Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding
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    Parvovirus Minute Virus of Mice Interacts with Sites of Cellular DNA Damage to Establish and Amplify its Lytic Infection
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    The testis protein ZNF165 is a SMAD3 cofactor that coordinates oncogenic TGFβ signaling in triple-negative breast cancer
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    INO80C Remodeler Maintains Genomic Stability by Preventing Promiscuous Transcription at Replication Origins
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    Genomic Rewiring of SOX2 Chromatin Interaction Network during Differentiation of ESCs to Postmitotic Neurons
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    Repressive H3K9me2 protects lifespan against the transgenerational burden of COMPASS activity in C. elegans
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    Umbilical cord blood-derived ILC1-like cells constitute a novel precursor for mature KIR+NKG2A- NK cells
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    Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains
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    Analysis of zebrafish periderm enhancers facilitates identification of a regulatory variant near human KRT8/18
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    Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle
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    CoBATCH for High-Throughput Single-Cell Epigenomic Profiling
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    The Ovulatory Signal Precipitates LRH-1 Transcriptional Switching Mediated by Differential Chromatin Accessibility
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    RNA Interactions Are Essential for CTCF-Mediated Genome Organization
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    Tau-Mediated Disruption of the Spliceosome Triggers Cryptic RNA Splicing and Neurodegeneration in Alzheimer’s Disease
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    Genome-wide Analyses of Chromatin State in Human Mast Cells Reveal Molecular Drivers and Mediators of Allergic and Inflammatory Diseases
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    Genome-wide analysis of the H3K27me3 epigenome and transcriptome in Brassica rapa
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    Recurrent SMARCB1 Mutations Reveal a Nucleosome Acidic Patch Interaction Site That Potentiates mSWI/SNF Complex Chromatin Remodeling
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    Quantification of Differential Transcription Factor Activity and Multiomics-Based Classification into Activators and Repressors: diffTF
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    Distinct Classes of Chromatin Loops Revealed by Deletion of an RNA-Binding Region in CTCF
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    Yeast Sirtuin Family Members Maintain Transcription Homeostasis to Ensure Genome Stability
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    De Novo PITX1 Expression Controls Bi-Stable Transcriptional Circuits to Govern Self-Renewal and Differentiation in Squamous Cell Carcinoma
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    1. scibot 12 Jan 2020
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      DOI: 10.1016/j.molcel.2018.11.006

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    sciencedirect.com/science/article/pii/S1097276518309481
  205. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    1. scibot 12 Jan 2020
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      DOI: 10.7554/eLife.43738

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    ncbi.nlm.nih.gov/pmc/articles/PMC6392498/
  206. Nov 2018
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    Elongation/Termination Factor Exchange Mediated by PP1 Phosphatase Orchestrates Transcription Termination
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      Deeptools

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    sciencedirect.com/science/article/pii/S2211124718314220
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    HOXA9 Reprograms the Enhancer Landscape to Promote Leukemogenesis
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      Curator: @Jmenke

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    Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate
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      DeepTools

      Curator: @Jmenke

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    Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells
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      deepTools

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    ncbi.nlm.nih.gov/pmc/articles/PMC6126923/
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    Disease-Associated Short Tandem Repeats Co-localize with Chromatin Domain Boundaries
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      deepTools

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    sciencedirect.com/science/article/pii/S0092867418310213
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    Epigenetic and Transcriptomic Profiling of Mammary Gland Development and Tumor Models Disclose Regulators of Cell State Plasticity
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      Deeptools

      Curator: @Jmenke

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    ncbi.nlm.nih.gov/pmc/articles/PMC6095691/
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      RRID:SCR_016366

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    sciencedirect.com/science/article/pii/S0092867418308559