367 Matching Annotations
  1. Sep 2022
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    STAG2 promotes the myelination transcriptional program in oligodendrocytes
    1
    1. scibot 08 Sep 2022
      RRID:SCR_016368

      DOI: 10.7554/eLife.77848

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    ncbi.nlm.nih.gov/pmc/articles/PMC9439679/
  3. www.sciencedirect.com www.sciencedirect.com
    The human mitochondrial genome contains a second light strand promoter
    1
    1. scibot 03 Sep 2022
      RRID:SCR_016368

      DOI: 10.1016/j.molcel.2022.08.011

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    sciencedirect.com/science/article/pii/S109727652200764X
  4. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Intracellular cholesterol pools regulate oncogenic signaling and epigenetic circuitries in Early T-cell Precursor Acute Lymphoblastic Leukemia
    1
    1. scibot 02 Sep 2022
      RRID:SCR_016368

      DOI: 10.1158/2159-8290.CD-21-0551

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    ncbi.nlm.nih.gov/pmc/articles/PMC8904296/
  5. Aug 2022
  6. www.sciencedirect.com www.sciencedirect.com
    Npas3 deficiency impairs cortical astrogenesis and induces autistic-like behaviors
    1
    1. scibot 31 Aug 2022
      RRID:SCR_016368

      DOI: 10.1016/j.celrep.2022.111289

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    sciencedirect.com/science/article/pii/S2211124722011093
  7. 52.53.155.43 52.53.155.43
    cd-21-1671-html.html
    1
    1. scibot 27 Aug 2022
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      DOI: 10.1158/2159-8290.cd-21-1671

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    52.53.155.43/5e67ddaf80a7b90ec85c4b24452e48b76eabacbf/cd-21-1671-html.html
  8. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Losartan blocks osteosarcoma-elicited monocyte recruitment, and combined with the kinase inhibitor toceranib, exerts significant clinical benefit in canine metastatic osteosarcoma
    1
    1. scibot 22 Aug 2022
      RRID:SCR_016368

      DOI: 10.1158/1078-0432.CCR-21-2105

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    ncbi.nlm.nih.gov/pmc/articles/PMC8866227/
  9. www.sciencedirect.com www.sciencedirect.com
    LncRNA and mRNA expression profiles in brown adipose tissue of obesity-prone and obesity-resistant mice
    1
    1. scibot 10 Aug 2022
      RRID:SCR_016368

      DOI: 10.1016/j.isci.2022.104809

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    sciencedirect.com/science/article/pii/S2589004222010811
  10. www.sciencedirect.com www.sciencedirect.com
    TOP1 CAD-seq: A protocol to map catalytically engaged topoisomerase 1 in human cells
    1
    1. scibot 04 Aug 2022
      RRID:SCR_016368

      DOI: 10.1016/j.xpro.2022.101581

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    sciencedirect.com/science/article/pii/S2666166722004610
  11. Jul 2022
  12. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    EGFR signaling activates intestinal stem cells by promoting mitochondrial biogenesis and β-oxidation
    1
    1. scibot 27 Jul 2022
      SCR_016368

      DOI: 10.1016/j.cub.2022.07.003

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    ncbi.nlm.nih.gov/pmc/articles/PMC10117080/
  13. academic.oup.com academic.oup.com
    A chromosome-level genome assembly and intestinal transcriptome of Trypoxylus dichotomus (Coleoptera: Scarabaeidae) to understand its lignocellulose digestion ability
    1
    1. scibot 06 Jul 2022
      RRID:SCR_016368

      DOI: 10.1093/gigascience/giac059

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac059/6619297
  14. www.cell.com www.cell.com
    Bacterial growth in multicellular aggregates leads to the emergence of complex life cycles
    1
    1. scibot 02 Jul 2022
      RRID:SCR_016368

      DOI: 10.1016/j.cub.2022.06.011

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    cell.com/current-biology/fulltext/S0960-9822(22)00923-X
  15. Jun 2022
  16. aacrjournals.org aacrjournals.org
    Cancer Stem Cells, not Bulk Tumor Cells, Determine Mechanisms of Resistance to SMO Inhibitors
    1
    1. scibot 15 Jun 2022
      RRID:SCR_016368

      DOI: 10.1158/2767-9764.CRC-22-0124

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    aacrjournals.org/cancerrescommun/article/2/6/402/699311/Cancer-Stem-Cells-not-Bulk-Tumor-Cells-Determine
  17. aacrjournals.org aacrjournals.org
    Porcupine inhibition disrupts mitochondrial function and homeostasis in WNT ligand-addicted pancreatic cancer
    1
    1. scibot 14 Jun 2022
      RRID:SCR_016368

      DOI: 10.1158/1535-7163.MCT-21-0623

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    aacrjournals.org/mct/article/21/6/936/699192/Porcupine-Inhibition-Disrupts-Mitochondrial
  18. elifesciences.org elifesciences.org
    Dnmt3a knockout in excitatory neurons impairs postnatal synapse maturation and increases the repressive histone modification H3K27me3
    1
    1. scibot 09 Jun 2022
      RRID:SCR_016368

      DOI: 10.7554/eLife.66909

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    elifesciences.org/articles/66909
  19. www.sciencedirect.com www.sciencedirect.com
    Direct epitranscriptomic regulation of mammalian translation initiation through N4-acetylcytidine
    1
    1. scibot 09 Jun 2022
      RRID:SCR_016368

      DOI: 10.1016/j.molcel.2022.05.016

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    sciencedirect.com/science/article/pii/S109727652200483X
  20. www.sciencedirect.com www.sciencedirect.com
    JAZF1-SUZ12 dysregulates PRC2 function and gene expression during cell differentiation
    1
    1. scibot 03 Jun 2022
      RRID:SCR_016368

      DOI: 10.1016/j.celrep.2022.110889

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    sciencedirect.com/science/article/pii/S2211124722006647
  21. www.sciencedirect.com www.sciencedirect.com
    Mapping cis-regulatory elements in human neurons links psychiatric disease heritability and activity-regulated transcriptional programs
    1
    1. scibot 03 Jun 2022
      RRID:SCR_016368

      DOI: 10.1016/j.celrep.2022.110877

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    sciencedirect.com/science/article/pii/S2211124722006520
  22. www.sciencedirect.com www.sciencedirect.com
    Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion
    1
    1. scibot 02 Jun 2022
      SCR_016368

      DOI: 10.1016/j.cub.2022.05.019

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    sciencedirect.com/science/article/pii/S0960982222007783
  23. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A Whole Transcriptome Analysis in Peripheral Blood Suggests That Energy Metabolism and Inflammation Are Involved in Major Depressive Disorder
    1
    1. scibot 01 Jun 2022
      RRID:SCR_016368

      DOI: 10.3389/fpsyt.2022.907034

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    ncbi.nlm.nih.gov/pmc/articles/PMC9136012/
  24. May 2022
  25. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae
    1
    1. scibot 04 May 2022
      RRID:SCR_016368

      DOI: 10.1093/gigascience/giac027

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    ncbi.nlm.nih.gov/pmc/articles/PMC9055855/
  26. Apr 2022
  27. www.sciencedirect.com www.sciencedirect.com
    RPAP2 regulates a transcription initiation checkpoint by inhibiting assembly of pre-initiation complex
    1
    1. scibot 27 Apr 2022
      RRID:SCR_016368

      DOI: 10.1016/j.celrep.2022.110732

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    sciencedirect.com/science/article/pii/S2211124722004934
  28. www.sciencedirect.com www.sciencedirect.com
    An adult-stage transcriptional program for survival of serotonergic connectivity
    1
    1. scibot 21 Apr 2022
      RRID:SCR_016368

      DOI: 10.1016/j.celrep.2022.110711

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    sciencedirect.com/science/article/pii/S2211124722004727
  29. www.sciencedirect.com www.sciencedirect.com
    HNF4A modulates glucocorticoid action in the liver
    1
    1. scibot 20 Apr 2022
      RRID:SCR_016368

      DOI: 10.1016/j.celrep.2022.110697

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    sciencedirect.com/science/article/pii/S2211124722004557
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome of the globe skimmer dragonfly (Pantala flavescens)
    1
    1. scibot 07 Apr 2022
      RRID:SCR_016368

      DOI: 10.1093/gigascience/giac009

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    ncbi.nlm.nih.gov/pmc/articles/PMC8978299/
  31. academic.oup.com academic.oup.com
    A high-quality assembled genome and its comparative analysis decode the adaptive molecular mechanism of the number one Chinese cotton variety CRI-12
    1
    1. scibot 05 Apr 2022
      RRID:SCR_016368

      DOI: 10.1093/gigascience/giac019

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac019/6562534
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Presence of H3K4me3 on Paternally Expressed Genes of the Paternal Genome From Sperm to Implantation
    1
    1. scibot 01 Apr 2022
      RRID:SCR_016368

      DOI: 10.3389/fcell.2022.838684

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    ncbi.nlm.nih.gov/pmc/articles/PMC8960379/
  33. Mar 2022
  34. elifesciences.org elifesciences.org
    Novel insights from a multiomics dissection of the Hayflick limit
    1
    1. scibot 23 Mar 2022
      RRID:SCR_016368

      DOI: 10.7554/eLife.70283

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    elifesciences.org/articles/70283
  35. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Placental uptake and metabolism of 25(OH)vitamin D determine its activity within the fetoplacental unit
    1
    1. scibot 11 Mar 2022
      RRID:SCR_016368

      DOI: 10.7554/eLife.71094

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    ncbi.nlm.nih.gov/pmc/articles/PMC8903835/
  36. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A test of the pioneer factor hypothesis using ectopic liver gene activation
    1
    1. scibot 04 Mar 2022
      RRID:SCR_016368

      DOI: 10.7554/eLife.73358

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    ncbi.nlm.nih.gov/pmc/articles/PMC8849321/
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    ZFTA-RELA Dictates Oncogenic Transcriptional Programs to Drive Aggressive Supratentorial Ependymoma
    1
    1. scibot 04 Mar 2022
      RRID:SCR_016368

      DOI: 10.1158/2159-8290.CD-20-1066

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    ncbi.nlm.nih.gov/pmc/articles/PMC8418998/
  38. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Fully resolved assembly of Cryptosporidium parvum
    1
    1. scibot 04 Mar 2022
      RRID:SCR_016368

      DOI: 10.1093/gigascience/giac010

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    ncbi.nlm.nih.gov/pmc/articles/PMC8848321/
  39. www.sciencedirect.com www.sciencedirect.com
    Identification of new ETV6 modulators through a high throughput functional screening
    1
    1. scibot 02 Mar 2022
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      DOI: 10.1016/j.isci.2022.103858

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    sciencedirect.com/science/article/pii/S2589004222001286
  40. Feb 2022
  41. www.sciencedirect.com www.sciencedirect.com
    Simultaneous cellular and molecular phenotyping of embryonic mutants using single-cell regulatory trajectories
    1
    1. scibot 18 Feb 2022
      RRID:SCR_016368

      DOI: 10.1016/j.devcel.2022.01.016

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    sciencedirect.com/science/article/pii/S1534580722000557
  42. www.sciencedirect.com www.sciencedirect.com
    Uncovering the mesendoderm gene regulatory network through multi-omic data integration
    1
    1. scibot 16 Feb 2022
      RRID:SCR_016368

      DOI: 10.1016/j.celrep.2022.110364

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    sciencedirect.com/science/article/pii/S2211124722000857
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Systematic analysis of naturally occurring insertions and deletions that alter transcription factor spacing identifies tolerant and sensitive transcription factor pairs
    1
    1. scibot 08 Feb 2022
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      DOI: 10.7554/eLife.70878

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    ncbi.nlm.nih.gov/pmc/articles/PMC8809895/
  44. Jan 2022
  45. www.sciencedirect.com www.sciencedirect.com
    Dynamic chromatin state profiling reveals regulatory roles of auxin and cytokinin in shoot regeneration
    1
    1. scibot 27 Jan 2022
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      DOI: 10.1016/j.devcel.2021.12.019

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    sciencedirect.com/science/article/pii/S153458072101039X
  46. www.sciencedirect.com www.sciencedirect.com
    Multimodal regulatory elements within a hormone-specific super enhancer control a heterogeneous transcriptional response
    1
    1. scibot 26 Jan 2022
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      DOI: 10.1016/j.molcel.2021.12.035

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    sciencedirect.com/science/article/pii/S1097276521011400
  47. www.sciencedirect.com www.sciencedirect.com
    Construction of Strand-seq libraries in open nanoliter arrays
    1
    1. scibot 26 Jan 2022
      RRID:SCR_016368

      DOI: 10.1016/j.crmeth.2021.100150

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    sciencedirect.com/science/article/pii/S2667237521002277
  48. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Heat shock factor 1 (HSF1) cooperates with estrogen receptor α (ERα) in the regulation of estrogen action in breast cancer cells
    1
    1. scibot 07 Jan 2022
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      DOI: 10.7554/eLife.69843

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    ncbi.nlm.nih.gov/pmc/articles/PMC8709578/
  49. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    MAP3K7 loss drives enhanced androgen signaling and independently confers risk of recurrence in prostate cancer with joint loss of CHD1
    2
    1. scibot 05 Jan 2022
      RRID:SCR_016368

      DOI: 10.1158/1541-7786.MCR-20-0913

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    2. scibot 05 Jan 2022
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      DOI: 10.1158/1541-7786.MCR-20-0913

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    ncbi.nlm.nih.gov/pmc/articles/PMC8254790/
  50. Dec 2021
  51. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Wnt signaling mediates acquisition of blood–brain barrier properties in naïve endothelium derived from human pluripotent stem cells
    1
    1. scibot 15 Dec 2021
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    Parity-induced changes to mammary epithelial cells control NKT cell expansion and mammary oncogenesis
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    SOX9 Defines Distinct Populations of Cells in SHH Medulloblastoma but Is Not Required for Math1-Driven Tumor Formation
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    Targeting the IRE1α/XBP1 Endoplasmic Reticulum Stress Response Pathway in ARID1A-Mutant Ovarian Cancers
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    Global chromatin relabeling accompanies spatial inversion of chromatin in rod photoreceptors
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    CLOCKWORK ORANGE promotes CLOCK-CYCLE activation via the putative Drosophila ortholog of CLOCK INTERACTING PROTEIN CIRCADIAN
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    Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation
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    Intrinsic Dynamics of a Human Gene Reveal the Basis of Expression Heterogeneity
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    Enhancer Architecture and Essential Core Regulatory Circuitry of Chronic Lymphocytic Leukemia
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    Iruka Eliminates Dysfunctional Argonaute by Selective Ubiquitination of Its Empty State
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    IKZF2 Drives Leukemia Stem Cell Self-Renewal and Inhibits Myeloid Differentiation
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    Gain of CTCF-Anchored Chromatin Loops Marks the Exit from Naive Pluripotency
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    Deregulated Expression of Mammalian lncRNA through Loss of SPT6 Induces R-Loop Formation, Replication Stress, and Cellular Senescence
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    Acetylation of Cytidine in mRNA Promotes Translation Efficiency
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    Widespread Enhancer Dememorization and Promoter Priming during Parental-to-Zygotic Transition
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    A B-Cell-Specific Enhancer Orchestrates Nuclear Architecture to Generate a Diverse Antigen Receptor Repertoire
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    Spatiotemporal m(i)RNA Architecture and 3′ UTR Regulation in the C. elegans Germline
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    Exon Junction Complex Shapes the Transcriptome by Repressing Recursive Splicing
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    An Interleukin-23-Interleukin-22 Axis Regulates Intestinal Microbial Homeostasis to Protect from Diet-Induced Atherosclerosis
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    Plant-Derived Exosomal MicroRNAs Shape the Gut Microbiota
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    SUMO Safeguards Somatic and Pluripotent Cell Identities by Enforcing Distinct Chromatin States
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    Developmentally Programmed Tankyrase Activity Upregulates β-Catenin and Licenses Progression of Embryonic Genome Activation
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  124. Apr 2021
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    The unique composition of Indian gut microbiome, gene catalogue, and associated fecal metabolome deciphered using multi-omics approaches
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    New de novo assembly of the Atlantic bottlenose dolphin (Tursiops truncatus) improves genome completeness and provides haplotype phasing
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    De Novo PITX1 Expression Controls Bi-Stable Transcriptional Circuits to Govern Self-Renewal and Differentiation in Squamous Cell Carcinoma
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      DOI: 10.1016/j.molcel.2018.11.006

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    Maternal Ribosomes Are Sufficient for Tissue Diversification during Embryonic Development in C. elegans
    1
    1. scibot 12 Jan 2020
      RRID:SCR_016368

      DOI: 10.1016/j.devcel.2019.01.019

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  148. Nov 2018
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    The SS18-SSX Oncoprotein Hijacks KDM2B-PRC1.1 to Drive Synovial Sarcoma
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    LKB1, Salt-Inducible Kinases, and MEF2C Are Linked Dependencies in Acute Myeloid Leukemia
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    Fas Promotes T Helper 17 Cell Differentiation and Inhibits T Helper 1 Cell Development by Binding and Sequestering Transcription Factor STAT1
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    Developmental History Provides a Roadmap for the Emergence of Tumor Plasticity
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    Polymer Simulations of Heteromorphic Chromatin Predict the 3D Folding of Complex Genomic Loci
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      Bowtie2

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    RbAp48 Protein Is a Critical Component of GPR158/OCN Signaling and Ameliorates Age-Related Memory Loss
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    sciencedirect.com/science/article/pii/S2211124718315377
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  156. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Stage-Specific Transcription Factors Drive Astrogliogenesis by Remodeling Gene Regulatory Landscapes
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    A Short Tandem Repeat-Enriched RNA Assembles a Nuclear Compartment to Control Alternative Splicing and Promote Cell Survival
    1
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      Bowtie2

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  158. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    TFAP2 transcription factors are regulators of lipid droplet biogenesis
    1
    1. scibot 05 Nov 2018
      bowtie2

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    Decoding Transcriptome Dynamics of Genome-Encoded Polyadenylation and Autoregulation with Small-Molecule Modulators of Alternative Polyadenylation
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      Bowtie2

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    Elongation/Termination Factor Exchange Mediated by PP1 Phosphatase Orchestrates Transcription Termination
    1
    1. scibot 05 Nov 2018
      Bowtie2

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    HOXA9 Reprograms the Enhancer Landscape to Promote Leukemogenesis
    1
    1. scibot 05 Nov 2018
      Bowtie2

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  163. www.sciencedirect.com www.sciencedirect.com
    Prospective Isolation and Characterization of Genetically and Functionally Distinct AML Subclones
    1
    1. scibot 05 Nov 2018
      Bowtie

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    Examining the Roles of H3K4 Methylation States with Systematically Characterized Antibodies
    1
    1. scibot 05 Nov 2018
      Bowtie2

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    The Mcm2-Ctf4-Polα Axis Facilitates Parental Histone H3-H4 Transfer to Lagging Strands
    1
    1. scibot 05 Nov 2018
      Bowtie2

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  166. www.ncbi.nlm.nih.govhttp www.ncbi.nlm.nih.govhttp
    Heteromeric RNP Assembly at LINEs Controls Lineage-Specific RNA Processing
    1
    1. scibot 05 Nov 2018
      Bowtie2

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    ncbi.nlm.nih.govhttp//europepmc.org/articles/PMC6108849/
  167. www.sciencedirect.com www.sciencedirect.com
    Phosphorylation of the Ribosomal Protein RPL12/uL11 Affects Translation during Mitosis
    1
    1. scibot 05 Nov 2018
      Bowtie 2

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  168. www.sciencedirect.com www.sciencedirect.com
    Dietary Lipids Modulate Notch Signaling and Influence Adult Intestinal Development and Metabolism in Drosophila
    1
    1. scibot 05 Nov 2018
      Bowtie

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    Single Cell and Open Chromatin Analysis Reveals Molecular Origin of Epidermal Cells of the Skin
    1
    1. scibot 05 Nov 2018
      Bowtie2

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    A Bacterial Chromosome Structuring Protein Binds Overtwisted DNA to Stimulate Type II Topoisomerases and Enable DNA Replication
    1
    1. scibot 05 Nov 2018
      Bowtie2

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    Aberrant ERBB4-SRC Signaling as a Hallmark of Group 4 Medulloblastoma Revealed by Integrative Phosphoproteomic Profiling
    1
    1. scibot 05 Nov 2018
      Bowtie 2

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    Mutant NPM1 Maintains the Leukemic State through HOX Expression
    1
    1. scibot 05 Nov 2018
      Bowtie2

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    MEF2B Instructs Germinal Center Development and Acts as an Oncogene in B Cell Lymphomagenesis
    1
    1. scibot 05 Nov 2018
      Bowtie2

      Curator: @Jmenke

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    Overcoming Resistance to Dual Innate Immune and MEK Inhibition Downstream of KRAS
    1
    1. scibot 05 Nov 2018
      Bowtie2

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    Dppa2/4 Facilitate Epigenetic Remodeling during Reprogramming to Pluripotency
    1
    1. scibot 05 Nov 2018
      Bowtie2

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    The Evf2 Ultraconserved Enhancer lncRNA Functionally and Spatially Organizes Megabase Distant Genes in the Developing Forebrain
    1
    1. scibot 05 Nov 2018
      bowtie2

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    Transcription Elongation Can Affect Genome 3D Structure
    1
    1. scibot 05 Nov 2018
      Bowtie2

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    Dismissal of RNA Polymerase II Underlies a Large Ligand-Induced Enhancer Decommissioning Program
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    Neutralizing Gatad2a-Chd4-Mbd3/NuRD Complex Facilitates Deterministic Induction of Naive Pluripotency
    1
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      Bowtie 2

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    GATA/Heme Multi-omics Reveals a Trace Metal-Dependent Cellular Differentiation Mechanism
    1
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      Bowtie2

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    Decoupling Yeast Cell Division and Stress Defense Implicates mRNA Repression in Translational Reallocation during Stress
    1
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      Bowtie2

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    Dual Roles of Poly(dA:dT) Tracts in Replication Initiation and Fork Collapse
    1
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      Bowtie 2

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    Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data
    1
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      Bowtie2

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    Genome-wide Map of R-Loop-Induced Damage Reveals How a Subset of R-Loops Contributes to Genomic Instability
    1
    1. scibot 05 Nov 2018
      Bowtie2

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    Loss of H3K27me3 Imprinting in Somatic Cell Nuclear Transfer Embryos Disrupts Post-Implantation Development
    1
    1. scibot 05 Nov 2018
      Bowtie2

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    A Quick HYL1-Dependent Reactivation of MicroRNA Production Is Required for a Proper Developmental Response after Extended Periods of Light Deprivation
    1
    1. scibot 05 Nov 2018
      Bowtie2

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      RRID:SCR_016368 RRIDCUR:Missing
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    sciencedirect.com/science/article/pii/S1534580718304994