The yield strength is the stress at which a material begins to deform plastically.

Below this value, the deformation of the material is elastic: once the applied stress is removed, the material returns to its initial shape. Above this value, the deformation becomes permanent and irreversible.

Young's modulus is a parameter used to characterize the stiffness of a material. It is defined as the ratio between the stress (force per unit area) and the strain (displacement normalized by the initial length) and it is expressed in Pa.

Stiffness is a parameter describing the rigidity of a given piece of material, i.e., the way this piece resists deformation when a force is applied to it.

An object with low stiffness (such as a piece of rubber) will exhibit large deformation in response to an applied force. On the other hand, a material with high stiffness (like a metallic piece) will deform less if the same force is applied.

Stiffness-to-weight ratio means the stiffness per unit mass density. This parameter characterizes the mechanical efficiency of a material.

Assembly of basic cells (either open or closed) with solid edges and faces packed together to form a material with specific properties.

Stereolithography is a method of 3D printing. Objects are printed one layer at a time by curing a photosensitive resin with a UV source.

Microstereolithography is the same technique applied to fabricate structures with microscale feature resolutions.

A microlattice is a connected network of struts of microscopic size.

The connectivity characterizes the degree by which each individual structural element is connected to others.

For example, a connectivity of eight means each node inside the unit cell is connected with eight structural filaments.

An isotropic object is an object whose properties are the same whatever the considered direction.

Microarchitected materials are composed of elements of microscopic size organized in a designed topology.

The mechanical properties of a material are indices used to describe the way this material behaves when submitted to a load.

Check out ImmiFlex's video on Neutrophil Phagocytosis

https://www.youtube.com/watch?v=Z_mXDvZQ6dU

A rapid process that involves change in the distribution of cell surface receptors on leukocytes. This aids in the process of extravasation into the tissue from blood vessels.

Death of tissue when blood and oxygen supply gets blocked is an infarction. In this case, the authors observed that tissue death/infarction in the brain was decreased when neutrophils were depleted.

The middle cerebral artery is one of the major blood vessels that supplies blood to the brain, occlusion of this would create loss of blood to the brain and thus mimic stroke. This is a method to induce stroke experimentally.

Injury when blood supply to tissues being restricted leads to shortage of oxygen in the tissue, such as during a stroke, where blood supply to brain is restricted.

Lung blood flow.

Inflammation of the blood vessels.

Inflammatory response to a pathogen or an insult. In this paper's context, it also refers to injury-induced inflammation.

The original distribution of these receptors was disturbed in the PSGL-1–deficient mice.

CXCR-2 is a receptor that binds to interleukin 8 (called KC in mice; secreted signaling proteins molecule). This activates neutrophils. Chemokines are secreted signaling molecules that attract cells to an area because of its gradient (mimicking chemoattraction).

Cytoplasmic domain is the part of the receptor that is present inside the surface of cells. On stimulation at the surface, the transduction of signal occurs through the cytoplasmic domain/tail that further instructs the cell.

Guanine nucleotide exchange factor belonging to the family with Rac GTPases that functions in a similar manner to Rac GTPases, described earlier.

The behavior of the neutrophils in the vasculature. In this study, this includes the mobility of the neutrophils.

Inside space of a blood vessel.

Rac GTPases are a class of G proteins that respond to a stimulus and transmit a signal from outside of a cell to its inside. They are usually in an "off" or inactive state when bound to a molecule called GDP (two phosphate groups).

Dock-2 helps Rac GTPasq2es in the exchange of GDP to GTP (three phosphate groups) so that the GTPase is now in the "on" or active state to transmit signal.

CD62L is a type of selectin found on lymphocytes. It is required for lymphocytes to move from circulation through the endothelial cell lining into tissue. CD62L on lymphocytes bind to ligands on endothelial cells, particularly those present in lymph nodes, to facilitate this movement.

Glycosylation is the process of adding a sugar molecule to a protein or lipid.

The uropod is defined as the tail end of a cell.

Motile cells develop a leading front that is made of actin filaments. Actin is a protein that is crucial for cell motility. Lamellipodia behaves like the engine of a motile cell pulling it forward.

Neutrophils are also called white blood cells. These are the first cells that respond to an infection.

They are normally found in the blood vessels, but on chemical induction owing to an infection, they migrate out of the blood vessels and into the site of infection.

Interaction between neutrophils protruding into the blood vessel and platelets inside the blood vessel via PSGL-1 initiated a signaling cascade that allowed neutrophils to redistribute their cell surface receptors, polarize, and eventually migrate.

For mobility of cells, polarization is a process that marks a cell with a front and tail end. The two ends usually differ in the arrangement of proteins (receptors) on the cell surface.

Thus, polarization of cells usually results in the redistribution of receptors.

stopped

Cutting in the transverse plane, or across.

Covered with fibrotic tissue.

A scar on human skin is an example of fibrosis. Instead of skin cells replacing the injury, fibrotic connective tissue takes it place.

A hormone that acts as a signal for growth in an organism. Can either be a sterol or protein.

At the cellular level, growth factors often promote synthesis of new DNA and cell division.

A type of cell that is closely affiliated with cells making up the peripheral nervous system. Briefly, these cells provide support for the nerve cells.

They are also thought to be important in promoting the regeneration of peripheral nerves after transection

A wrist level stump is made by transecting the "hand" of the salamander off.

That blastema is then grafted on the shoulder stump of another salamander. The shoulder stump of that salamander is made by amputating the whole limb.

A textbook/reference book that provides readers a basic foundation of regenerative biology.

An increase in how often the cells divide.

Another way of saying low magnification, zoomed far out.

A GPI-anchored protein important in tissue reorganization events.

A protein that has gone through the secretory pathway and been released into the outside environment.

For a video on protein trafficking and secretion please see: https://www.youtube.com/watch?v=rvfvRgk0MfA

The nerves that extend into the limb were cut at the brachial plexus. This is essentially the region where the limb meets body. In humans, roughly around the shoulder area.

For an image see here

Deformed, wasted, smaller in size.

A gland or glands or related to them.

The authors rename the homolog of this protein as nAG in their studies. The "n" stands for newt.

This is a stage in early limb regeneration where the blastema is still present, but you are starting to see growth of the new limb.

Breaking tissue or a clump of cells down into single, individual cells.

Save or reverse. To put another way, "can nAG restore limb regeneration in denervated animals?"

The movement of cancer from one location to another.

For example, lung cancer can metastasize and spread to the lymph nodes.

BrdU was added to medium for a period of time and then removed.

Pulse labeling, in general, is the addition of substance and then its subsequent removal.

This is much like the pulse button of a blender where you press it for a few seconds to blend and then release it shortly after to stop.

Stands for Human Natural Killer-1. Based on this naming what organism was originally discovered in?

African clawed frogs (scientific name Xenopus laevis or shortened to Xenopus) is a common model organism in biology.

Development of a pattern.

In the case of biology, this usually refers to how a structure such as the limb becomes patterned. That is, how muscle cells are specified, how the digits are made, how the cells know to become skin cells, etc.

The regeneration stage where digits (fingers) are clearly visible and present.

The limb on the other side of the body. For example, your left arm is contralateral to your right arm.

Tubulin is a major protein of the cytoskeleton and makes up microtubules.

Acetylated tubulin is very similar, but has an acetyl group (COCH\(_3\)) added to it.

Proteins that are part of the same family as nAG.

That is, for a limb to regenerate it depends on, or needs the nerve.

Without the nerve supply to the limb, it fails to regenerate.

Connections between brain cells (neurons) in the hippocampus.

The hippocampus is a seahorse-shaped structure that is associated with the formation of new memories. Damage to the hippocampus results in an inability to form new memories (like in the movie Memento).

Click here to learn more about the hippocampus

Brain activity during sleep - for example, sleep spindles.

The length of time spent in rapid-eye-movement (REM) sleep (the stage of sleep often associated with dreaming).

A pattern of brainwave activity represented by slower, rhythmic activity.

Slow waves occur most often during deep sleep and are thought to play a role in consolidation.

A pattern of brainwave activity represented by bursts of fast rhythmic activity.

Sleep spindles are not well understood but are thought to help coordinate information transfer between different areas of the brain. They may play a role in transforming memories into more permanent, long-term storage.

Systems-level consolidation specifically refers to the process of memory stabilization that involves multiple brain regions, takes a longer time, and results in more permanent long-term memory (as opposed to synaptic consolidation which occurs more immediately after learning).

Click here for more information on the neurological processes of memory stabilization

Procedural memories are memories for skills (e.g. riding a bike or hitting a baseball).

When you have learned a skill, you are generally unable to consciously describe the specific knowledge that you've gained.

Click here for more information

People who are not part of the group being preferred (the in-group). If in one context, the group of individuals being preferred is a group of White individuals, then out-group members would be all other individuals.

Information that goes against the stereotype - in this case information that pairs Black with positive items and women with math and science.

A tendency to generalize about members of a group or to attribute certain characteristics to one group over another. These preferences and attributions can be conscious or unconscious.

Click here to learn more about how biases have become more subtle in the last century.

The tendency to feel and express emotions similar to and influenced by those of others.

Voluntary behavior designed to help others.

Of the same species.

An animal that shares the same cage as another.

Experiments in which the variables are controlled so that the effects of varying one factor at a time may be observed.

These rats had regular access to food before the experiment

Communication of feelings, thoughts, or attitudes between individuals.

An abstract is a short overview of the experiments and results found in a paper. In this case, the abstract outlines Hansen and colleagues' work on mapping forest cover changes across the globe through time.

Science is interdisciplinary. Take a look at the authors who worked together on this project. Some of them are from remote sensing fields at various universities, whereas others are computer scientists and engineers at Google.

Authors:

Matthew C. Hansen (remote sensing scientist at University of Maryland, and associate team member of NASA's MODIS Land Science Team)

Peter V. Potapov (remote sensing scientist at University of Maryland)

R. Moore (Google)

M. Hancher (Google)

S. A. Turudanova (University of Maryland)

A. Tyukavina (University of Maryland)

D. Thau (Google)

S.V. Stehman (Syracuse University)

S. J. Goetz (Woods Hole Research Center)

T. R. Loveland (U.S. Geological Survey)

A. Kommareddy (South Dakota University)

A. Egorov (South Dakota University)

L. Chini (University of Maryland)

C. O. Justice (University of Maryland)

J.R.G. Townshend (University of Maryland)

Also, if you are interested in taking a closer look at the results, the data from this paper are featured here.

"Carbon stocks" refers to the amount of carbon that is stored in forests. Trees, other plants, and even forest soils store organic carbon (e.g., think of photosynthesis).

To normalize data in statistics refers to adjusting the values in a way that gets rid of confounding factors, in this case these factors are the large variation in sizes of different countries and sizes of forests that are being changed in each country.

By normalizing these data, Hansen and colleagues can directly compare the forest change in different countries.

Normalization is akin to the saying "comparing apples to oranges," and taking the apples and oranges and making them more similar to each other so that they can be directly compared, like comparing star fruit with star fruit. (Star fruits taste like the cross between an apple and an orange.)

Ecology is the scientific study of interactions between organisms and their environment. It considers the relationships between organisms of the same species, organisms of different species, and the nonliving, chemical and physical components of their environment.

Through the use of a drug, or a molecule that has a biological effect on the cells, tissues, or organs of an organism.

A genus of flowering plants whose seeds (coffee beans) are used to make coffee.

A genus of flowering plants including oranges, lemons and limes.

A naturally occurring carbohydrate commonly known as table sugar.

To increase the power or effect of something. Often used in reference to the effect of a drug.

A pair of structures in the brain of insects known to play a role in learning and developing memories of smells.

Picture: Drosophila Mushroom Bodies

A drug that acts as a stimulant of the Central Nervous System found in common beverages like coffee, tea, and some sodas.

Picture: 3D Structure of Caffeine_3D_ball.png)

Relating to the sense of smell.

A substance that interferes with the activity of another. In this case, it blocks the activation of adenosine receptors.

The amount of a substance at which the taste buds are able to detect its bitter taste.

The ability to acquire and then use knowledge.

Though both are commonly associated with honey bees, the nectar and pollen are two very different things.

Nectar is a sugar-rich liquid produced by flowering plants in order to attract pollinators like honey bees. The more pollinators visit a flower, the more nectar it produces. Nectar is most commonly known as the sugar source for the honey produced by bees.

Pollen is the reason why flowering plants produce nectar in the first place. Pollen is a powder that carries the male sperm cells of a seed plant to the stigma of another flower. There, it can make its way to the female reproductive organ of the flower, where fertilization will occur. This is the process by which flowering plants reproduce.

However, pollen can't move on its own; that's where pollinators like honey bees come in. When a pollinator comes to a flower to drink its nectar, the flower's pollen gets stuck on the pollinator, which then carries it to another flower.

When scientists use the word "significant," they don't necessarily mean to say that something is particularly important or noteworthy.

"Significant" used this way is a specific statistical term that indicates that something is unlikely to have arisen simply by chance.

Since in this context the authors found that the concentration was NOT significantly different, that means that the concentrations were the same between genera, and any differences seen were most likely due to chance rather than due to some systematic process.

That is, if caffeine makes these plants more "fit," or more likely to survive and reproduce, thereby successfully passing on their genes to the next generation of plants.

In chemistry, a measure of the amount of dissolved substance per unit of volume.

Millimolar, or millimoles per liter - a unit of concentration.

In statistics, a regression analysis is a method for estimating relationships among variables.

It helps you understand how one variable (the dependent variable) changes when another variable (the independent variable) is changed, while all other variables remain constant.

This type of analysis is often used for prediction or forecasting.

Logistic regression is a regression analysis where the dependent variable is categorical. This means that it does not have a numerical value, for example a study participant's eye color or blood type.

See this video for more information on how logistic regression works.

A Z-Score is a statistical measurement of the number of standard deviations an observation is above the mean. (To learn more about standard deviations, see here)

Thus, Z-score of 0 means the observation is the same as the mean, a positive Z-score tells you the observation fell that many standard deviations above the mean, and a negative score tells it fell that many standard deviations below the mean.

So in this case, a Z score of -1.09 tells us that the observation fell 1.09 standard deviations below the mean.

See here to learn more about how Z-scores are calculated.

When you perform a statistical test, a p-value helps you determine whether or not your results are significant. A p-value can be calculated by several different statistical tests.

A very small p-value (usually less than or equal to 0.05, though this varies depending on the field of study) indicates that there is strong evidence that the results were not due to chance. Therefore, the results are significant.

A large p-value (usually larger than 0.05) indicates that there is weak evidence that the results were not due to chance, and therefore the results are not considered significant.

In this case, the p-value is 0.272. As this is much greater than 0.05, the median caffeine concentrations in both genera are not considered significantly different.

Adenosine receptors are proteins that, when they come into contact with the molecule adenosine, play an important role in cellular signaling.

Adenosine receptors in the brain regulate the release of neurotransmitters, chemicals that send messages from neurons to other cells.

Sensilla are little hair-like sensory organs that help insects detect a number of different chemical and mechanical stimuli, like smells or touch.

Concurrently; existing or occurring at the same time.

i.e., while looking for food.

When adenosine binds to its receptors in the brain, neural activity slows down. This has a number of effects, including dilating the blood vessels in your brain and making you fall asleep.

When caffeine binds to these same receptors, it takes the place that adenosine would normally fill, but it doesn't slow neural activity. This makes it harder for you to fall asleep.

Any substance that blocks the normal activity of another, like caffeine blocks the activity of adenosine in this case, is called an "antagonist."

The hippocampus is the region of the human brain (also present in many other vertebrates) that is important for spatial navigation and for processing information from short-term to long-term memory.

Fun fact: the name "hippocampus" come from the Greek "hippos" (horse) and "kampos" (sea monster) - the scientists who first named the hippocampus thought its shape very closely resembled a seahorse!

Long-term potentiation is thought to be one of the key cellular processes behind learning and memory.

"Synaptic plasticity" is a term used in neurobiology to refer to the ability of synapses, the structure that allows neurons to send signals to each other, to change their strength. That is to say that they can change how strong or weak the signals being passed between neurons are. Memories are thought to be encoded by these changes in synaptic strength.

Long-term potentiation is the persistent, long-lasting strengthening of these synapses. It's one of the processes underlying synaptic plasticity and has been shown to be required for the formation of memories, though scientists are still not completely clear on how that happens.

See here to learn more about long-term potentiation and synaptic plasticity.

Not much is known about the CA2 region of the hippocampus, but it has been shown to be instrumental for certain forms of learning, memory, and social behavior.

Kenyon cells are a type of Mushroom Body neuron that are responsible for learning and memory. The authors highlight similarities between Kenyon cells and mammalian hippocampal neurons, as both are involved in learning and long- and short-term memory.

During Alzheimer's disease in humans, early symptoms like memory loss and disorientation are due to damage to the hippocampus.

See here to learn more!

Associative learning is the process by which one learns to associate one stimulus with another, or with a stimulus and a behavior.

For example, Pavlov's dogs learning to associate the ringing of a bell with receiving a treat is an example of associative learning.

Watch this video to learn more about learning.

i.e. information acquired using the senses: sight, smell, touch, taste, hearing.

Nicotinic aceylcholine receptors (nAChR) are a type of ligand-gated ion channel - ion channels that open in response to binding its specific signal molecule, or ligand.

nAChR can be activated by two possible ligands — acetylcholine, a neurotransmitter, and nicotine.

The plural of "genus," a group of organisms ranking above "species" and below "family" in modern taxonomy.

When a cell is not firing, it is "at rest." The resting potential of a cell is the difference in charge between the inside of the cell and the environment outside it. For the average human neuron, the resting membrane potential is approximately -70 millivolts, meaning the inside of the cell has a charge that is 70 millivolts lower than the outside.

While a resting potential occurs when a neuron is at rest, an action potential occurs when a neuron is firing.

Neurons send signals down their axons, long arms that conduct electrical impulses down the neuron (typically away from the neuron's cell body.) An action potential occurs when neurons send these signals down their axons, causing a short, fast increase in electrical activity. Scientists therefore often refer to action potentials as nerve "spikes" or "impulses."

Action potentials are caused by the passage of ions through a membrane; the electrical current that results from this passage is how neurons send signals.

When a neuron receives a stimulus, a sodium channel opens first. As the inside of the cell is negative (remember the -70 mV resting potential!), positively-charged sodium ions waiting outside the cell move into the cell through this open channel.

As the positively-charged ions enter the cell, the charge inside the cell increases slowly at first. If the potential inside the cell doesn't increase to a certain firing threshold (in human neurons, -55 mV), the result is a small, localized increase in potential called a graded potential. The neuron doesn't fire in response, and the signal is not sent down the neuron's axon.

If, however, the firing threshold is achieved, voltage-gated sodium channels open and the resulting rapid influx of sodium ions causes the spike in electrical activity that we call an action potential. The charge inside the cell rapidly approaches 0 mV, then crosses it to reach a maximum potential of about +40 mV. This rapid increase in the cell's potential is called depolarization.

In response to the increasingly positive charge inside the cell, the voltage-gated sodium channels close and potassium channels slowly begin to open. As the cell is now positively charged relative to the environment outside it, positively-charged potassium ions inside the cell exit through the channels.

The action potential then decreases back down to -70 mV, a process called repolarization, and actually passes a little bit below it (hyperpolarization), as the potassium channels stay open slightly longer than necessary.

Ion levels within the cell gradually balance out to resting levels with the help of Sodium-Potassium ion pumps, and the cell returns to its -70 mV resting potential.

All action potentials for neurons of the same size will always have the same magnitude. So in the case of human neurons, the action potential will always reach +40 mV, no more, no less. So how do our nerves convey signals of different intensities?

While the magnitudes of these action potentials don't vary, their frequencies can. The more action potentials occurring in a given time frame, the more intense a signal the neuron is sending.

For a great visual explanation of these concepts, watch the Crash Course video here.

Classical conditioning is a form of learning in which a subject learns to associate a neutral stimulus (in this case, the floral odor), with a stimulus of biological significance (in this case, receiving sugar), which elicits an innate, often reflexive, response (the extension of the honeybee's proboscis, or mouthpart).

As a result of this association, the first stimulus (the floral odor) is able to elicit the conditioned response (proboscis extension), even though it previously elicited no response at all.

See here for a great review of the history of classical conditioning of honeybees, as well as a detailed description of the methods involved.

The Mann-Whitney U Test is a statistical test used to test the null hypothesis that two populations (in this case, the caffeine concentrations from C. canephora and C. arabica) are the same, against an alternative hypothesis (in this case, that the mean caffeine concentration in one genus is greater than that of the other).

Put simply, this test allowed the scientists to determine whether or not the caffeine concentrations were significantly different.

This particular test is necessary when you are comparing two groups (in this case, the mean caffeine concentration of Citrus and Coffea) whose data is not distributed across a bell-curve, or in other words is not normally distributed (see here).

See here for a more detailed explanation of nonparametric statistics and the Mann-Whitney U Test.

Spike-timing-dependent plasticity adjusts the strength of connections between neurons in the brain based on the relative timing of a particular neuron's output and input spikes (or action potentials).

A memory is the thing remembered (a scent, a sound, an event, etc.), but the "memory trace" is the structural alteration of brain cells that occurs after learning that, in a way, serves as a physical representation of that memory.

Defensive self-evaluation is a form of self-evaluation that is affected by external sources, such as the evaluations of other people.

Defensive self-evaluation is less stable than "secure" self-evaluation, which is driven by internal sources.

The Positive and Negative Affect Schedule scale is a very common way of measuring an individual's mood.

The scale involves the presentation of a list of different emotions (e.g., cheerful, sad, relaxed, distressed), and participants are asked to rate to what extent they currently feel each emotion.

The expanded form of the scale involves emotions that can be split into a number of different dimensions: general positive affect, general negative affect, basic positive emotions, basic negative emotions, and "other" affective states (shyness, fatigue, serenity, and surprise).

In a footnote, the authors explain that "conservatism" is a complex concept, involving many different factors. So in this research, they restrict their research to U.S. samples and use multiple different ways of defining conservatism.

They use participants' self-reported political ideology (Study 1), party affiliation (i.e., Republican versus Democrat) (Study 2), congressional voting records (Study 2), social media use (Study 3), and involvement with liberal and conservative organizations (Study 4).

A "meta-analysis" is a kind of statistical technique for analyzing results across many different studies that all examine the same thing.

So, this meta-analytic review of the topic (done by Onraet, Van Hiel, and Dhont, 2013) looked at data from close to 70,000 participants, across 97 studies, all of which examined the relationship between political ideology and happiness in some way.

"Agency" refers to the extent that people feel like they have personal control over their lives.

The more agentic someone feels, the more he or she feels like they are free to make personal choices.

The "ideological happiness gap" is a way of referring to this self-reported difference in happiness between conservatives and liberals.

That is, there is a "gap" in levels of happiness, based on political ideology.

"Big data" is a relatively new term, and it refers to collecting information from an exceptionally large data set.

Studies that use "big data" do not involve running an experiment in a laboratory; instead, they involve analyzing data that are already out there in the world.

Social media platforms, such as Facebook or Twitter, are common sources of "big data."

"Self-enhancement" is the act of making yourself seem better (or, in this case, happier) than you really are.

It's the idea of putting your best foot forward, and it helps people feel good about themselves and maintain self-esteem.

"Mediation" is a statistical term, which tries to answer the question of 'why' a relationship between two variables occurs.

If X causes Y because of Z, then Z mediates (or explains) the relationship between X and Y.

"Subjective well-being" (SWB) refers to an individual's perception of personal happiness and quality of life.

SWB is often meant to include mood/emotions, general happiness, and overall life satisfaction.

This is what aCDOM,λ and Kd,λ measure—see the next sentence/annotation.

pH is a measurement of how acidic a liquid is.

Low pH means very acidic.

This is more than 2 billion tons (!!) of carbon transferred from lakes, streams, and rivers to the atmosphere.

Organic carbon is found in all soils and water on Earth and is produced by the decay of living things (plants, animals, etc.).

Organic carbon compounds are made of carbon atoms attached to at least one hydrogen atom.

Organic molecules can be large and contain hundreds of carbon atoms, have only one or two carbon atoms, or anything in between.

Permafrost is a layer of soil that stays frozen all year—even in the summer ("permanently frosted" soil).

Global warming is causing some permafrost in the arctic to thaw.

A proxy is a substitute. In the analysis of research, sometimes certain measurements or indicators are wanted but missing from the data set. If that is the case, a proxy measurement can be the solution.

In this case the researcher wants to have an indication of family poverty because poverty is an important piece for understanding the background of the students involved in the study. Because free or reduced price lunches are based on household income levels, they can serve as a proxy measurement.

Observational studies are those based only on the observation of interactions. There is no experimental intervention.

Because the previous observational studies do not prove that summer jobs cause a reduction in violence, the author proposes an experimental research design.

Real world image:

Gravity sewer systems are used to transport wastewater by means of gravity.

Mostly used in seawater desalination, which means removing salt from seawater to produce drinkable water. A more detailed explanation on how reverse-osmosis works can be found here.

Fair

Conditions in absence of oxygen.

Another common term in this context is anoxic conditions. It refers to the conditions without oxygen but with the presence of nitrate.

Infrastructure (e.g. roads, bridges, pipe lines, etc.): basic equipment and structures for proper functioning of a region or organization (Reference).

Coagulants are chemicals used to remove particulates by forming flocs and therefore increasing the weight and facilitating the gravity settling (Reference).

Diseases could be bacterial, viral, or parasitic. Examples: diarrhoea, hepatitis A, and giardiasis (Reference).

Mitigation can be defined as actions to prevent damage to the property (Reference).

Here is an informative and funny (close to the end) video describing coagulation/flocculation process.

Particles ranging between 1 and 1000 nanometers in diameter (Reference)

The time needed for a component to exit the system.

A statistical term. When you order the numbers in a sample from lowest to highest the number in the middle gives the median value.

Domestic watewaters are produced in our homes, whereas industrial wastewaters, as the name implies, are produced as a result of an industrial activity.

Inorganic anion (a negatively charged ion) of sulfur

Here is a fun video showing drinking water treatment.

Sequelae simply means a negative after-effect.

In this case, it is the long-term negative impact on the bodies defense system (immune system) following a measles infection. This negative impact is also known as immunosuppression.

Typified means "characteristic of", as in basically all measles virus infections will behave this way.

Unmet vaccination targets mean that countries are failing to vaccinate enough of their populations to achieve herd immunity and provide adequate protection to prevent the spread of the measles disease.

Polymicrobial

Poly = many, like how a polyhedron is a shape with many sides

Microbial = having to do with microorganisms, or living things that are too small to see with the naked eye. Like viruses, bacteria and fungi, some of which can make you sick, and some which can be beneficial (like yogurt!)

All-cause infectious disease in this paper aims to describes infectious diseases other than measles. In other words, diseases caused by all infectious agents.

B and T lymphocytes are important cell types that make up the long-term response of your immune system.

When the body fights off disease it uses some generic, built-in responses to be able to start controlling an infection right away, but this innate response is rarely able to cure you. After about a week, your body learns the specific pathogen that is making you sick and makes B and T lymphocytes to effectively fight off that specific pathogen, and importantly, to remember it in case you get sick with the same thing again. Using this learning response (called an adaptive immune response because it adapts to the infection you have) is how vaccines work.

If the B and T lymphocytes you made against a specific pathogen are killed then you loose that specific response, the "memory" you built to defend yourself.

If the number of B and T lymphocytes you have is reduced, this can also impair your ability to fight off a pathogen no matter if you have done so before.

To learn more about how the immune system works to fight off infection you can read this free Chapter from the textbook "Molecular Biology of the Cell"

Interannual fluctuations in nonmeasles deaths is another way to say "the yearly change in the numbers of nonmeasles deaths." In other words, the number of children who die from diseases other than measles changes from year to year.

The authors in this paper will use these changes in the number of deaths, correlated to the number of measles cases, to demonstrate the long-term effect of measles caused immunosuppression.

The pre-vaccine era is before the measles vaccine became available for the public for use in the 1960's.

The post-vaccine era continues today, when the measles vaccine (MMR) is available to those who wish to receive it.

Disease mortality is the scientific term used for the amount of death a disease causes. The flu, which kills many people every year, has a HIGHER mortality than the common cold.

A more prolonged effect simply means a change which lasts longer. In this case it is a longer effect on host resistance (see next annotation).

Predispose means to make something easier to happen, in this case easier to get sick. For example, if you do not exercise and eat right you are predisposed to (or more likely to become) obese.

Population-level data is a term that is used in statistics to describe including the entire population in your analysis. This is in contrast to using a smaller sample population to infer (make an educated guess) things about the whole population.

For example, imagine that your entire school is the population you wish to study. If you want to collect population-level data you will need to ask everyone if they like chocolate ice cream. Sometimes this isn't possible so scientists collect the data from a smaller sample, like just your class. They learn that 75% of your class likes chocolate ice cream and so they infer that 75% of the entire school likes chocolate ice cream. This approach is easier, but it is still more accurate to survey the entire class.

In this study, the use of full population-level data, not inferences from sample data, makes their conclusions stronger.

Food for thought: What is the population that is really important to study in this research? In other worlds, the population of a single country is really a sample of what even larger population?

The Facial Action Coding System (FACS) is a system for identifying and categorizing changes in facial expression.

Even minute anatomical changes in facial muscles (i.e., contraction or relaxation of specific muscles in the face) can be coded as distinct "action units," and there is extensive training involved in being able to identify and code these facial movements.

The head scientist involved in designing the FACS system, Paul Ekman, is known for using FACS to detect microexpressions—brief, involuntary facial movements that can be used, among other things, in the detection of deception.

The television show Lie To Me was loosely based on Ekman and his work.

Named after 19th century French physician Guillaume Duchenne, a "Duchenne smile" is one that involves both the mouth and the eyes; it is considered to be a more "genuine" display of happiness, compared with a smile that only involves the mouth.

Here's an example, modeled by psychologist Paul Ekman, who is an expert on facial expressions and emotion.

Can you tell which one is which?

Test yourself with this short video!

The Linguistic Inquiry Word Count (LIWC, pronounced "Luke") software is text analysis software that can analyze linguistic content for specific words and/or categories of words.

This is the muscle that circles around the eye. It controls blinking, squinting, and the movement at the corners of the eyes that relates to Duchenne smiles.

Hedonic well-being is characterized by the achievement/fulfillment of pleasure. It is often considered to be a relatively short-term form of happiness.

This is the muscle that controls the corners of the mouth.

"Ego defensiveness" is very similar to self-protection. The idea is that people have psychological mechanisms that are commonly used to protect/defend the "ego," or the self.

"Political ideology" refers to how people identify themselves on the spectrum between liberalism and conservatism.

"Self-report measures" involve responses to basic survey questions. For example, asking participants how happy they are, on a scale from 1 to 10, would be a self-report measure.

Leukocytes are also called white blood cells. The vast majority of immune cells are leukocytes, neutrophils being one of them.

Integrins are another class of cell adhesion molecules. These receptors are known to interact with the extracellular matrix or surface proteins on endothelial cells, and help in the process of leukocyte extravasation, a process that involves the movement of leukocytes (white blood cells) through the walls of the blood vessels into the site of infection.

Chemokines are proteins released by cells that can recruit other cells by forming a chemical gradient (similar to a trail of scent).

Chemokines and selectins become alert/activated during an infection and, in turn, activate/trigger the integrins to initiate cellular recruitment.

In case of cellular responses, activation involves biochemical changes in the structure of molecules, which now allow it to bind/release from certain other molecules.

A series of such activation events is what induces a signaling cascade in cells.

Selectins are carbohydrate-binding molecules present on cell surfaces. Endothelial cells line the the walls of blood vessels.

E-selectins are produced by endothelial cells. During an infection, selectins serve to recruit immune cells to the site of inflammation.

Inflammation, meaning swelling with redness and pain, is one of the major consequences of an immune response. However, sometimes excessive inflammation can be harmful to the host, hence referred to as inflammatory injury (injury inflicted upon the host by the body's immune system).

In general, when the mammalian body encounters a foreign object, be it a pathogen causing disease or an allergic nonpathogenic molecule, the immune cells in the system are triggered and begin a cascade of reactions in an attempt to contain and eventually eliminate the foreign entity.

White blood cells

Somatic refers to all the cells of the body that are not germline cells (eggs or sperm).

Germline cells are the sex cells in the body (sperm in males and eggs in females).

A genus of flies that are often used as model organisms in research. They are commonly called "fruit flies."

A chimeric fly has two distinct cell populations. In this case, a mutagenic event occurred early in the development of the female chimera, causing it to have one genotype on one half of its body, and a different genotype on the other half.

Refers to the phenotype of an organism as it was found in nature. In contrast to a mutant allele, the wildtype phenotype is the product of the "normal" allele for a particular gene.

A genetic element is autocatalytic if it converts the companion chromosome to its own state.

Homology arms are DNA sequences in a plasmid that are identical to a specific genomic DNA sequence. The homology arms are used to direct homologous recombination of a plasmid into the genome.

Mosaic organisms have multiple cells populations with different genotypes. In this case, the mosaic flies had small patches of brown color but were mostly yellow.

Lakes, rivers, streams, etc. (NOT the ocean)

Lakes, rivers, streams

susceptible

Amount of time a molecule exists before it is broken down

Light travels from place to place in the form of a wave. All types of light have a characteristic wavelength. In the visible spectrum, red light has the longest wavelengths and purple has the shortest. UV light has shorter wavelengths than visible light.

Headwater streams are small, shallow streams that carry water from the surrounding land area into a main river.

Indicates that the water in this river came from melting glaciers

The amount of time that water stays in a lake before evaporating or flowing into another body of water.

Benthic is a word used to describe things that take place in the sediments at the bottom of a body of water.

Bacterial respiration is when microbes “eat” organic carbon, causing it to break down into smaller molecules. In most cases, bacteria require oxygen to break down organic carbon.

Photochemical oxidation is when sunlight and oxygen react with organic carbon, causing it to break down into smaller molecules

The invisible component for sunlight that is responsible for sunburn and breaks down organic compounds. UV light has a shorter wavelength than visible light. See this link for more information.

This video, made by people who work with primary author Rose Cory, explains what photodegradation is.