473 Matching Annotations
  1. Nov 2018
  2. www.sciencedirect.com www.sciencedirect.com
    Developmental Origin Governs CD8+ T Cell Fate Decisions during Infection
    1
    1. scibot 05 Nov 2018
      bedtools

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    sciencedirect.com/science/article/pii/S009286741830641X
  3. elifesciences.org elifesciences.org
    Computational prediction of CTCF/cohesin-based intra-TAD loops that insulate chromatin contacts and gene expression in mouse liver
    1
    1. scibot 05 Nov 2018
      Bedtools

      Curator: @evieth

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    elifesciences.org/articles/34077
  4. elifesciences.org elifesciences.org
    Epigenetic drift of H3K27me3 in aging links glycolysis to healthy longevity in Drosophila
    1
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    elifesciences.org/articles/35368
  5. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    1. scibot 05 Nov 2018
      RRID:SCR_006646

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    ncbi.nlm.nih.gov/pmc/articles/PMC5967868/
  6. elifesciences.org elifesciences.org
    BRG1 governs glucocorticoid receptor interactions with chromatin and pioneer factors across the genome
    1
    1. scibot 05 Nov 2018
      RRID:SCR_006646

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    elifesciences.org/articles/35073
  7. www.sciencedirect.com www.sciencedirect.com
    Natural Infection of C. elegans by an Oomycete Reveals a New Pathogen-Specific Immune Response
    1
    1. scibot 05 Nov 2018
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    sciencedirect.com/science/article/pii/S0960982218300319
  8. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    ncbi.nlm.nih.gov/pmc/articles/PMC5941149/
  9. academic.oup.com academic.oup.com
    Whole-Genome De Novo sequencing reveals unique genes that contributed to the adaptive evolution of the mikado pheasant
    1
    1. scibot 05 Nov 2018
      RRID:SCR_006646

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    academic.oup.com/gigascience/article/7/5/giy044/4990948
  10. www.sciencedirect.com www.sciencedirect.com
    Molecular, Pathological, Radiological, and Immune Profiling of Non-brainstem Pediatric High-Grade Glioma from the HERBY Phase II Randomized Trial
    1
    1. scibot 05 Nov 2018
      BEDtools

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    sciencedirect.com/science/article/pii/S1535610818301752
  11. www.sciencedirect.com www.sciencedirect.com
    Spliceosome Profiling Visualizes Operations of a Dynamic RNP at Nucleotide Resolution
    1
    1. scibot 05 Nov 2018
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    sciencedirect.com/science/article/pii/S0092867418303003
  12. www.sciencedirect.com www.sciencedirect.com
    Systematic Discovery of RNA Binding Proteins that Regulate MicroRNA Levels
    1
    1. scibot 05 Nov 2018
      RRID:SCR_006646

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    sciencedirect.com/science/article/pii/S1097276518301102
  13. academic.oup.com academic.oup.com
    Homoeolog-specific activation of genes for heat acclimation in the allopolyploid grass Brachypodium hybridum
    1
    1. scibot 05 Nov 2018
      RRID:SCR_006646

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    academic.oup.com/gigascience/article/7/4/giy020/4924998
  14. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Direct Promoter Repression by BCL11A Controls the Fetal to Adult Hemoglobin Switch
    1
    1. scibot 05 Nov 2018
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    ncbi.nlm.nih.gov/pmc/articles/PMC5889339/
  15. academic.oup.com academic.oup.com
    Untitled document
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    academic.oup.com/gigascience/article/7/4/giy034/4958981
  16. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
    1
    1. scibot 05 Nov 2018
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    ncbi.nlm.nih.gov/pmc/articles/PMC5898914/
  17. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    1
    1. scibot 05 Nov 2018
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    ncbi.nlm.nih.gov/pmc/articles/PMC5899830/
  18. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation
    1
    1. scibot 05 Nov 2018
      RRID:SCR_006646

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    ncbi.nlm.nih.gov/pmc/articles/PMC5869287/
  19. www.sciencedirect.com www.sciencedirect.com
    Chromatin Accessibility-Based Characterization of the Gene Regulatory Network Underlying Plasmodium falciparum Blood-Stage Development
    1
    1. scibot 05 Nov 2018
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    sciencedirect.com/science/article/pii/S1931312818301367
  20. elifesciences.org elifesciences.org
    Untitled document
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    elifesciences.org/articles/33569
  21. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Atf3 links loss of epithelial polarity to defects in cell differentiation and cytoarchitecture
    1
    1. scibot 05 Nov 2018
      RRID:SCR_006646

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    ncbi.nlm.nih.gov/pmc/articles/PMC5849342/
  22. www.sciencedirect.com www.sciencedirect.com
    Constitutively Active SMAD2/3 Are Broad-Scope Potentiators of Transcription-Factor-Mediated Cellular Reprogramming
    1
    1. scibot 05 Nov 2018
      BEDTools

      Curator: @evieth

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    sciencedirect.com/science/article/pii/S1934590917304307
  23. www.sciencedirect.com www.sciencedirect.com
    Comparative Heterochromatin Profiling Reveals Conserved and Unique Epigenome Signatures Linked to Adaptation and Development of Malaria Parasites
    1
    1. scibot 05 Nov 2018
      BEDTools

      Curator: @evieth

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    sciencedirect.com/science/article/pii/S193131281830043X
  24. elifesciences.org elifesciences.org
    Integration of human pancreatic islet genomic data refines regulatory mechanisms at Type 2 Diabetes susceptibility loci
    1
    1. scibot 05 Nov 2018
      RRID:SCR_006646

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    elifesciences.org/articles/31977
  25. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Epitranscriptomic m6A Regulation of Axon Regeneration in the Adult Mammalian Nervous System
    1
    1. scibot 05 Nov 2018
      RRID:SCR_006646

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    ncbi.nlm.nih.gov/pmc/articles/PMC5777326/
  26. academic.oup.com academic.oup.com
    CNVcaller: highly efficient and widely applicable software for detecting copy number variations in large populations
    1
    1. scibot 05 Nov 2018
      RRID:SCR_006646

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    academic.oup.com/gigascience/article/6/12/1/4689116
  27. europepmc.org europepmc.org
    A map of human PRDM9 binding provides evidence for novel behaviors of PRDM9 and other zinc-finger proteins in meiosis.
    1
    1. scibot 05 Nov 2018
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    europepmc.org/articles/PMC5705219/
  28. europepmc.org europepmc.org
    Untitled document
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    europepmc.org/articles/PMC5608512/
  29. www.sciencedirect.com www.sciencedirect.com
    The Stone Age Plague and Its Persistence in Eurasia
    1
    1. scibot 05 Nov 2018
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    sciencedirect.com/science/article/pii/S0960982217313283
  30. europepmc.org europepmc.org
    A novel SH2 recognition mechanism recruits Spt6 to the doubly phosphorylated RNA polymerase II linker at sites of transcription.
    1
    1. scibot 05 Nov 2018
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    europepmc.org/articles/PMC5599234/
  31. Nov 2017
  32. europepmc.org europepmc.org
    Host proteostasis modulates influenza evolution.
    1
    1. scibot 08 Nov 2017
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    europepmc.org/articles/PMC5614556/
  33. www.sciencedirect.com www.sciencedirect.com
    Temporal Control of Mammalian Cortical Neurogenesis by m6A Methylation
    1
    1. scibot 08 Nov 2017
      BedTools

      Curator: @Jmenke

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    sciencedirect.com/science/article/pii/S0092867417310528
  34. www.sciencedirect.com www.sciencedirect.com
    Adaptive Evolution Leads to Cross-Species Incompatibility in the piRNA Transposon Silencing Machinery
    1
    1. scibot 08 Nov 2017
      BEDTools

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    sciencedirect.com/science/article/pii/S153458071730672X
  35. www.sciencedirect.com www.sciencedirect.com
    Antagonistic Activities of Sox2 and Brachyury Control the Fate Choice of Neuro-Mesodermal Progenitors
    1
    1. scibot 08 Nov 2017
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    sciencedirect.com/science/article/pii/S153458071730597X
  36. www.sciencedirect.com www.sciencedirect.com
    Extensive Farming in Estonia Started through a Sex-Biased Migration from the Steppe
    1
    1. scibot 08 Nov 2017
      SCR_006646

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    sciencedirect.com/science/article/pii/S0960982217307248
  37. www.sciencedirect.com www.sciencedirect.com
    Muscle Stem Cells Undergo Extensive Clonal Drift during Tissue Growth via Meox1-Mediated Induction of G2 Cell-Cycle Arrest
    1
    1. scibot 08 Nov 2017
      BEDtools

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    sciencedirect.com/science/article/pii/S1934590917302291
  38. elifesciences.org elifesciences.org
    Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells
    1
    1. scibot 08 Nov 2017
      bedtools

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    elifesciences.org/articles/23203
  39. www.sciencedirect.com www.sciencedirect.com
    The U6 snRNA m6A Methyltransferase METTL16 Regulates SAM Synthetase Intron Retention
    1
    1. scibot 08 Nov 2017
      BedTools

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    sciencedirect.com/science/article/pii/S0092867417305305
  40. bmcbiol.biomedcentral.com bmcbiol.biomedcentral.com
    Mov10 suppresses retroelements and regulates neuronal development and function in the developing brain
    1
    1. scibot 08 Nov 2017
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    bmcbiol.biomedcentral.com/articles/10.1186/s12915-017-0387-1
  41. www.sciencedirect.com www.sciencedirect.com
    Dynamic Reorganization of Chromatin Accessibility Signatures during Dedifferentiation of Secretory Precursors into Lgr5+ Intestinal Stem Cells
    1
    1. scibot 08 Nov 2017
      Bedtools

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    sciencedirect.com/science/article/pii/S1934590917301662
  42. www.sciencedirect.com www.sciencedirect.com
    TERRA RNA Antagonizes ATRX and Protects Telomeres
    1
    1. scibot 08 Nov 2017
      Bedtools

      Curator: @chewbeccax

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    sciencedirect.com/science/article/pii/S0092867417307006
  43. www.sciencedirect.com www.sciencedirect.com
    LTR-Retrotransposon Control by tRNA-Derived Small RNAs
    1
    1. scibot 08 Nov 2017
      Bedtools

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    sciencedirect.com/science/article/pii/S0092867417306967
  44. www.sciencedirect.com www.sciencedirect.com
    Human Virus-Derived Small RNAs Can Confer Antiviral Immunity in Mammals
    1
    1. scibot 08 Nov 2017
      Bedtools

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    sciencedirect.com/science/article/pii/S1074761317302224
  45. www.sciencedirect.com www.sciencedirect.com
    Chromatin Accessibility Landscape of Cutaneous T Cell Lymphoma and Dynamic Response to HDAC Inhibitors
    1
    1. scibot 08 Nov 2017
      BedTools

      Curator: @chewbeccax

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    sciencedirect.com/science/article/pii/S1535610817302040
  46. www.sciencedirect.com www.sciencedirect.com
    Coordinated circRNA Biogenesis and Function with NF90/NF110 in Viral Infection
    1
    1. scibot 08 Nov 2017
      bedtools

      Curator: @chewbeccax

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      (BEDTools, RRID:SCR_006646)

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    sciencedirect.com/science/article/pii/S1097276517303635
  47. www.sciencedirect.com www.sciencedirect.com
    The Transcription Factor T-bet Limits Amplification of Type I IFN Transcriptome and Circuitry in T Helper 1 Cells
    1
    1. scibot 08 Nov 2017
      BEDTOOLS

      Curator: @chewbeccax

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      (BEDTools, RRID:SCR_006646)

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    sciencedirect.com/science/article/pii/S1074761317302212
  48. elifesciences.org elifesciences.org
    Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexity
    1
    1. scibot 08 Nov 2017
      SCR_006646

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    elifesciences.org/articles/22194v2
  49. elifesciences.org elifesciences.org
    Evolution of reduced co-activator dependence led to target expansion of a starvation response pathway
    1
    1. scibot 08 Nov 2017
      SCR_006646

      Curator: @Zeljana_Babic

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      (BEDTools, RRID:SCR_006646)

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    elifesciences.org/articles/25157
  50. www.sciencedirect.com www.sciencedirect.com
    A Global View of RNA-Protein Interactions Identifies Post-transcriptional Regulators of Root Hair Cell Fate
    1
    1. scibot 08 Nov 2017
      Bedtools v2.26.0

      Curator: @Zeljana_Babic

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      (BEDTools, RRID:SCR_006646)

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    sciencedirect.com/science/article/pii/S1534580717302022
  51. elifesciences.org elifesciences.org
    Variation in olfactory neuron repertoires is genetically controlled and environmentally modulated
    1
    1. scibot 08 Nov 2017
      BEDTools

      Curator: @kaitlinsung

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      (BEDTools, RRID:SCR_006646)

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    elifesciences.org/content/6/e21476
  52. www.sciencedirect.com www.sciencedirect.com
    Stem Cell Lineage Infidelity Drives Wound Repair and Cancer
    1
    1. scibot 08 Nov 2017
      BEDTools

      Curator: @Zeljana_Babic

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    sciencedirect.com/science/article/pii/S0092867417303719
  53. www.sciencedirect.com www.sciencedirect.com
    Transcriptional Dependencies in Diffuse Intrinsic Pontine Glioma
    1
    1. scibot 08 Nov 2017
      Bedtools

      Curator: @Zeljana_Babic

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      (BEDTools, RRID:SCR_006646)

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    sciencedirect.com/science/article/pii/S1535610817301071
  54. www.sciencedirect.com www.sciencedirect.com
    Aberrant DNA Methylation in Human iPSCs Associates with MYC-Binding Motifs in a Clone-Specific Manner Independent of Genetics
    1
    1. scibot 08 Nov 2017
      bedtools

      Curator: @Zeljana_Babic

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      (BEDTools, RRID:SCR_006646)

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    sciencedirect.com/science/article/pii/S1934590917300814
  55. www.sciencedirect.com www.sciencedirect.com
    The BET Protein BRD2 Cooperates with CTCF to Enforce Transcriptional and Architectural Boundaries
    1
    1. scibot 08 Nov 2017
      BEDTools

      Curator: @Zeljana_Babic

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      (BEDTools, RRID:SCR_006646)

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    sciencedirect.com/science/article/pii/S1097276517301648
  56. www.sciencedirect.com www.sciencedirect.com
    Foxh1 Occupies cis-Regulatory Modules Prior to Dynamic Transcription Factor Interactions Controlling the Mesendoderm Gene Program
    1
    1. scibot 08 Nov 2017
      SCR_006646

      Curator: @kaitlinsung

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      (BEDTools, RRID:SCR_006646)

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    sciencedirect.com/science/article/pii/S1534580717300862
  57. www.sciencedirect.com www.sciencedirect.com
    An Orchestrated Intron Retention Program in Meiosis Controls Timely Usage of Transcripts during Germ Cell Differentiation
    1
    1. scibot 08 Nov 2017
      Bedtools V2-2.20.1

      Curator: @Zeljana_Babic

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      (BEDTools, RRID:SCR_006646)

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    sciencedirect.com/science/article/pii/S1534580717301247
  58. www.sciencedirect.com www.sciencedirect.com
    Metazoan Nuclear Pores Provide a Scaffold for Poised Genes and Mediate Induced Enhancer-Promoter Contacts
    1
    1. scibot 08 Nov 2017
      BEDtools

      Curator: @Zeljana_Babic

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    sciencedirect.com/science/article/pii/S1097276517301351
  59. www.sciencedirect.com www.sciencedirect.com
    H3K4 Methylation-Dependent Memory of Somatic Cell Identity Inhibits Reprogramming and Development of Nuclear Transfer Embryos
    1
    1. scibot 08 Nov 2017
      bedtools (version 2.25.0)

      Curator: @Zeljana_Babic

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      (BEDTools, RRID:SCR_006646)

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    sciencedirect.com/science/article/pii/S1934590917300747
  60. www.sciencedirect.com www.sciencedirect.com
    The Landscape of Mouse Meiotic Double-Strand Break Formation, Processing, and Repair
    1
    1. scibot 08 Nov 2017
      BEDTools

      Curator: @Zeljana_Babic

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      (BEDTools, RRID:SCR_006646)

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    sciencedirect.com/science/article/pii/S0092867416313174
  61. www.sciencedirect.com www.sciencedirect.com
    Planarian Epidermal Stem Cells Respond to Positional Cues to Promote Cell-Type Diversity
    1
    1. scibot 08 Nov 2017
      bedtools

      Curator: @kaitlinsung

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    sciencedirect.com/science/article/pii/S1534580717300771
  62. www.sciencedirect.com www.sciencedirect.com
    Destabilization of B2 RNA by EZH2 Activates the Stress Response
    1
    1. scibot 08 Nov 2017
      bedtools

      Curator: @chewbeccax

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      (BEDTools, RRID:SCR_006646)

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    sciencedirect.com/science/article/pii/S0092867416316518
  63. www.sciencedirect.com www.sciencedirect.com
    Nuclear RNA Decay Pathways Aid Rapid Remodeling of Gene Expression in Yeast
    1
    1. scibot 08 Nov 2017
      Bedtools

      Curator: @kaitlinsung

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      (BEDTools, RRID:SCR_006646)

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    sciencedirect.com/science/article/pii/S1097276517300059
  64. www.sciencedirect.com www.sciencedirect.com
    Mutations in Human Accelerated Regions Disrupt Cognition and Social Behavior
    1
    1. scibot 08 Nov 2017
      Bedtools

      Curator: @chewbeccax

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    sciencedirect.com/science/article/pii/S0092867416311692
  65. www.sciencedirect.com www.sciencedirect.com
    Nicotinamide Ameliorates Disease Phenotypes in a Human iPSC Model of Age-Related Macular Degeneration
    1
    1. scibot 08 Nov 2017
      Bedtools

      Curator: @Zeljana_Babic

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      (BEDTools, RRID:SCR_006646)

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    sciencedirect.com/science/article/pii/S1934590916305021
  66. www.sciencedirect.com www.sciencedirect.com
    Inheritable Silencing of Endogenous Genes by Hit-and-Run Targeted Epigenetic Editing
    1
    1. scibot 08 Nov 2017
      bedtools

      Curator: @chewbeccax

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      (BEDTools, RRID:SCR_006646)

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    sciencedirect.com/science/article/pii/S0092867416312363
  67. www.sciencedirect.com www.sciencedirect.com
    Direct GR Binding Sites Potentiate Clusters of TF Binding across the Human Genome
    1
    1. scibot 08 Nov 2017
      BEDTools

      Curator: @chewbeccax

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    sciencedirect.com/science/article/pii/S0092867416309990
  68. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A molecular portrait of maternal sepsis from Byzantine Troy
    1
    1. scibot 08 Nov 2017
      SCR_006646

      Curator: @gabimpine

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      (BEDTools, RRID:SCR_006646)

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    ncbi.nlm.nih.gov/pmc/articles/PMC5224923/
  69. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Spatiotemporal coupling and decoupling of gene transcription with DNA replication origins during embryogenesis in C. elegans
    1
    1. scibot 08 Nov 2017
      SCR_006646

      Curator: @gabimpine

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    ncbi.nlm.nih.gov/pmc/articles/PMC5222557/
  70. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An alternative splicing program promotes adipose tissue thermogenesis
    1
    1. scibot 08 Nov 2017
      BEDtools

      Curator: @gabimpine

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    ncbi.nlm.nih.gov/pmc/articles/PMC5026472/
  71. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome
    1
    1. scibot 08 Nov 2017
      SCR_006646

      Curator: @gabimpine

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    ncbi.nlm.nih.gov/pmc/articles/PMC5182062/
  72. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Oral transfer of chemical cues, growth proteins and hormones in social insects
    1
    1. scibot 08 Nov 2017
      SCR_006646

      Curator: @chewbeccax

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      (BEDTools, RRID:SCR_006646)

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    ncbi.nlm.nih.gov/pmc/articles/PMC5153251/
  73. www.sciencedirect.com www.sciencedirect.com
    A Multi-step Transcriptional and Chromatin State Cascade Underlies Motor Neuron Programming from Embryonic Stem Cells
    1
    1. scibot 08 Nov 2017
      SCR_006646

      Curator: @gabimpine

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    sciencedirect.com/science/article/pii/S1934590916304027
  74. elifesciences.org elifesciences.org
    Compact and highly active next-generation libraries for CRISPR-mediated gene repression and activation
    1
    1. scibot 08 Nov 2017
      SCR_006646

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    elifesciences.org/articles/19760
  75. elifesciences.org elifesciences.org
    Transcription-coupled genetic instability marks acute lymphoblastic leukemia structural variation hotspots
    1
    1. scibot 08 Nov 2017
      BEDTools

      Curator: @gabimpine

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      (BEDTools, RRID:SCR_006646)

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    elifesciences.org/content/5/e13087