905 Matching Annotations
  1. Jan 2020
  2. elifesciences.org elifesciences.org
    Mucosal infection rewires TNFɑ signaling dynamics to skew susceptibility to recurrence
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    1. scibot 13 Jan 2020
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      DOI: 10.7554/eLife.46677

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    The Bone Marrow Protects and Optimizes Immunological Memory during Dietary Restriction
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      DOI: 10.1016/j.cell.2019.07.049

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    CTCF confers local nucleosome resiliency after DNA replication and during mitosis
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      DOI: 10.7554/eLife.47898

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    Metabolic Control of Astrocyte Pathogenic Activity via cPLA2-MAVS
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      DOI: 10.1016/j.cell.2019.11.016

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    FOXA2 Is Required for Enhancer Priming during Pancreatic Differentiation
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      DOI: 10.1016/j.celrep.2019.06.034

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  7. elifesciences.org elifesciences.org
    Cardiac neural crest contributes to cardiomyocytes in amniotes and heart regeneration in zebrafish
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      DOI: 10.7554/eLife.47929

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    Combinatorial action of NF–Y and TALE at embryonic enhancers defines distinct gene expression programs during zygotic genome activation in zebrafish
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      DOI: 10.1016/j.ydbio.2019.12.003

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    Postmortem Cortex Samples Identify Distinct Molecular Subtypes of ALS: Retrotransposon Activation, Oxidative Stress, and Activated Glia
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      DOI: 10.1016/j.celrep.2019.09.066

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    β-Glucan-Induced Trained Immunity Protects against Leishmania braziliensis Infection: a Crucial Role for IL-32
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      DOI: 10.1016/j.celrep.2019.08.004

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    A Pan-cancer Transcriptome Analysis Reveals Pervasive Regulation through Alternative Promoters
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      DOI: 10.1016/j.cell.2019.08.018

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  12. elifesciences.org elifesciences.org
    FMRP has a cell-type-specific role in CA1 pyramidal neurons to regulate autism-related transcripts and circadian memory
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    1. scibot 13 Jan 2020
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      DOI: 10.7554/eLife.46919

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    The Ovulatory Signal Precipitates LRH-1 Transcriptional Switching Mediated by Differential Chromatin Accessibility
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    Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease
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      DOI: 10.1016/j.chom.2019.10.009

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      DOI: 10.1016/j.cub.2018.10.065

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      DOI: 10.7554/eLife.44161

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      DOI: 10.1016/j.stem.2019.04.005

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      DOI: 10.1038/s41598-018-37627-y

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    Distinct Immune Cell Populations Define Response to Anti-PD-1 Monotherapy and Anti-PD-1/Anti-CTLA-4 Combined Therapy
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      DOI: 10.1016/j.ccell.2019.01.003

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    sciencedirect.com/science/article/pii/S1535610819300376
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    Mutations in an Innate Immunity Pathway Are Associated with Poor Overall Survival Outcomes and Hypoxic Signaling in Cancer
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      DOI: 10.1016/j.celrep.2018.11.093

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    sciencedirect.com/science/article/pii/S2211124718318849
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    Oncogenic Notch Promotes Long-Range Regulatory Interactions within Hyperconnected 3D Cliques
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      DOI: 10.1016/j.molcel.2019.01.006

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    Monocyte-Derived CD11c+ Cells Acquire Plasmodium from Hepatocytes to Prime CD8 T Cell Immunity to Liver-Stage Malaria
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    sciencedirect.com/science/article/pii/S1931312819301106
  26. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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      DOI: 10.7554/eLife.41913

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    ncbi.nlm.nih.gov/pmc/articles/PMC6336405/
  27. physoc.onlinelibrary.wiley.com physoc.onlinelibrary.wiley.com
    High‐fat diet intake modulates maternal intestinal adaptations to pregnancy and results in placental hypoxia, as well as altered fetal gut barrier proteins and immune markers
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      DOI: 10.1113/JP277353

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  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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      DOI: 10.7554/eLife.43101

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    Drug Screening in Human PSC-Cardiac Organoids Identifies Pro-proliferative Compounds Acting via the Mevalonate Pathway
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      DOI: 10.1016/j.stem.2019.03.009

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    sciencedirect.com/science/article/pii/S1934590919301080
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      DOI: 10.1016/j.cell.2019.01.040

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    Impaired LXRα Phosphorylation Attenuates Progression of Fatty Liver Disease
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      DOI: 10.1016/j.celrep.2018.12.094

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    sciencedirect.com/science/article/pii/S2211124718320540
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      DOI: 10.1016/j.immuni.2018.12.010

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  36. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  37. Nov 2018
  38. www.sciencedirect.com www.sciencedirect.com
    Human Huntington’s Disease iPSC-Derived Cortical Neurons Display Altered Transcriptomics, Morphology, and Maturation
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    Systematic Discovery of RNA Binding Proteins that Regulate MicroRNA Levels
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    iPSCs from a Hibernator Provide a Platform for Studying Cold Adaptation and Its Potential Medical Applications
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    The Mouse Microbiome Is Required for Sex-Specific Diurnal Rhythms of Gene Expression and Metabolism
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    sciencedirect.com/science/article/pii/S1550413118306314
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    A Feedforward Mechanism Mediated by Mechanosensitive Ion Channel PIEZO1 and Tissue Mechanics Promotes Glioma Aggression
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    sciencedirect.com/science/article/pii/S0896627318308481
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    Mutational Landscape of Secondary Glioblastoma Guides MET-Targeted Trial in Brain Tumor
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    sciencedirect.com/science/article/pii/S0092867418312509
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    Chd2 Is Necessary for Neural Circuit Development and Long-Term Memory
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    Protein Kinase C Epsilon Deletion in Adipose Tissue, but Not in Liver, Improves Glucose Tolerance
    1
    1. scibot 05 Nov 2018
      DESeq2

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  47. onlinelibrary.wiley.com onlinelibrary.wiley.com
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    onlinelibrary.wiley.com/doi/abs/10.1002/cne.24551
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    Muscle Satellite Cell Cross-Talk with a Vascular Niche Maintains Quiescence via VEGF and Notch Signaling
    1
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      DeSeq2

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    sciencedirect.com/science/article/pii/S1934590918304442
  49. www.sciencedirect.com www.sciencedirect.com
    Genetic Modulation of RNA Splicing with a CRISPR-Guided Cytidine Deaminase
    1
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      DESeq2

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    XBP1-KLF9 Axis Acts as a Molecular Rheostat to Control the Transition from Adaptive to Cytotoxic Unfolded Protein Response
    1
    1. scibot 05 Nov 2018
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      Curator: @evieth

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    sciencedirect.com/science/article/pii/S2211124718314438
  51. www.sciencedirect.com www.sciencedirect.com
    HOXA9 Reprograms the Enhancer Landscape to Promote Leukemogenesis
    1
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    sciencedirect.com/science/article/pii/S1535610818303787
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    ZFX Mediates Non-canonical Oncogenic Functions of the Androgen Receptor Splice Variant 7 in Castrate-Resistant Prostate Cancer
    1
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    Dynamic Human Environmental Exposome Revealed by Longitudinal Personal Monitoring
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    CD56 Expression Marks Human Group 2 Innate Lymphoid Cell Divergence from a Shared NK Cell and Group 3 Innate Lymphoid Cell Developmental Pathway
    1
    1. scibot 05 Nov 2018
      DESeq2

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    Phosphorylation of the Ribosomal Protein RPL12/uL11 Affects Translation during Mitosis
    1
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    Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate
    1
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    Single Cell and Open Chromatin Analysis Reveals Molecular Origin of Epidermal Cells of the Skin
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    Metabolic and Transcriptional Modules Independently Diversify Plasma Cell Lifespan and Function
    1
    1. scibot 05 Nov 2018
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  60. www.nature.com www.nature.com
    RANKL/RANK control Brca1 mutation-driven mammary tumors
    1
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    nature.com/articles/cr201669
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    Antibodies Set Boundaries Limiting Microbial Metabolite Penetration and the Resultant Mammalian Host Response
    1
    1. scibot 05 Nov 2018
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  62. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC6126923/
  63. www.sciencedirect.com www.sciencedirect.com
    Neurons under T Cell Attack Coordinate Phagocyte-Mediated Synaptic Stripping
    1
    1. scibot 05 Nov 2018
      DESeq2

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  64. www.sciencedirect.com www.sciencedirect.com
    Light Affects Mood and Learning through Distinct Retina-Brain Pathways
    1
    1. scibot 05 Nov 2018
      DESeq2

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    A Map of Toll-like Receptor Expression in the Intestinal Epithelium Reveals Distinct Spatial, Cell Type-Specific, and Temporal Patterns
    1
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    TBK1 Suppresses RIPK1-Driven Apoptosis and Inflammation during Development and in Aging
    1
    1. scibot 05 Nov 2018
      DESeq2

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    Dppa2/4 Facilitate Epigenetic Remodeling during Reprogramming to Pluripotency
    1
    1. scibot 05 Nov 2018
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    The Evf2 Ultraconserved Enhancer lncRNA Functionally and Spatially Organizes Megabase Distant Genes in the Developing Forebrain
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    Transcription Elongation Can Affect Genome 3D Structure
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  70. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    Systematic Characterization of Stress-Induced RNA Granulation
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    Dissecting the Functional Consequences of De Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology
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    1. scibot 05 Nov 2018
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    A Family of Vertebrate-Specific Polycombs Encoded by the LCOR/LCORL Genes Balance PRC2 Subtype Activities
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    1. scibot 05 Nov 2018
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    Extracellular Matrix Components HAPLN1, Lumican, and Collagen I Cause Hyaluronic Acid-Dependent Folding of the Developing Human Neocortex
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    Endothelial Regeneration of Large Vessels Is a Biphasic Process Driven by Local Cells with Distinct Proliferative Capacities
    1
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    The Mitochondrial-Encoded Peptide MOTS-c Translocates to the Nucleus to Regulate Nuclear Gene Expression in Response to Metabolic Stress
    1
    1. scibot 05 Nov 2018
      DESeq2

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    Loss of PRMT5 Promotes PDGFRα Degradation during Oligodendrocyte Differentiation and Myelination
    1
    1. scibot 05 Nov 2018
      DESeq2

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  80. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Role of m6A/m-RNA Methylation in Stress Response Regulation
    1
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    Biology and Clinical Implications of the 19q13 Aggressive Prostate Cancer Susceptibility Locus
    1
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    Translational Control through Differential Ribosome Pausing during Amino Acid Limitation in Mammalian Cells
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      DESeq2

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    3D Culture Method for Alzheimer's Disease Modeling Reveals Interleukin-4 Rescues Aβ42-Induced Loss of Human Neural Stem Cell Plasticity
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    TALE factors use two distinct functional modes to control an essential zebrafish gene expression program
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    Defects in the Alternative Splicing-Dependent Regulation of REST Cause Deafness
    1
    1. scibot 05 Nov 2018
      RRID:SCR_015687

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      (DESeq2, RRID:SCR_015687)

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    sciencedirect.com/science/article/pii/S0092867418307293
  87. www.sciencedirect.com www.sciencedirect.com
    A LINE1-Nucleolin Partnership Regulates Early Development and ESC Identity
    1
    1. scibot 05 Nov 2018
      Deseq2

      Curator: @Jmenke

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      (DESeq2, RRID:SCR_015687)

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      RRID:SCR_015687 RRIDCUR:Missing
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    sciencedirect.com/science/article/pii/S009286741830655X
  88. www.jneurosci.org www.jneurosci.org
    A Central Extended Amygdala Circuit That Modulates Anxiety
    1
    1. scibot 05 Nov 2018
      RRID:SCR_015687

      Curator: @evieth

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      (DESeq2, RRID:SCR_015687)

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      RRID:SCR_015687 RRIDCUR:Validated
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    jneurosci.org/content/38/24/5567
  89. www.sciencedirect.com www.sciencedirect.com
    EMT Subtype Influences Epithelial Plasticity and Mode of Cell Migration
    1
    1. scibot 05 Nov 2018
      DESeq2

      Curator: @Jmenke

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      (DESeq2, RRID:SCR_015687)

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    sciencedirect.com/science/article/pii/S1534580718304209
  90. www.cell.com www.cell.com
    A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain
    1
    1. scibot 05 Nov 2018
      RRID:SCR_015687

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      (DESeq2, RRID:SCR_015687)

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    cell.com/cell/abstract/S0092-8674(18)30720-7
  91. www.sciencedirect.com www.sciencedirect.com
    Multiscale 3D Genome Rewiring during Mouse Neural Development
    1
    1. scibot 05 Nov 2018
      DESeq2

      Curator: @Jmenke

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      (DESeq2, RRID:SCR_015687)

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    sciencedirect.com/science/article/pii/S0092867417311376
  92. www.sciencedirect.com www.sciencedirect.com
    Transcriptome Engineering with RNA-Targeting Type VI-D CRISPR Effectors
    1
    1. scibot 05 Nov 2018
      DESeq2

      Curator: @Jmenke

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      (DESeq2, RRID:SCR_015687)

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    sciencedirect.com/science/article/pii/S0092867418302071
  93. www.sciencedirect.com www.sciencedirect.com
    An Integrated Genome-wide CRISPRa Approach to Functionalize lncRNAs in Drug Resistance
    1
    1. scibot 05 Nov 2018
      DESeq2

      Curator: @Jmenke

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      (DESeq2, RRID:SCR_015687)

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    sciencedirect.com/science/article/pii/S0092867418303842
  94. www.sciencedirect.com www.sciencedirect.com
    Morphogenesis and Compartmentalization of the Intestinal Crypt
    1
    1. scibot 05 Nov 2018
      DESeq2

      Curator: @Jmenke

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      (DESeq2, RRID:SCR_015687)

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    sciencedirect.com/science/article/pii/S1534580718302442
  95. www.sciencedirect.com www.sciencedirect.com
    A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain
    1
    1. scibot 05 Nov 2018
      RRID: SCR_015687

      Curator: @evieth

      Resource used:

      (DESeq2, RRID:SCR_015687)

      Originally identified as: RRID: SCR_015687

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    sciencedirect.com/science/article/pii/S0092867418307207
  96. www.sciencedirect.com www.sciencedirect.com
    Natural Infection of C. elegans by an Oomycete Reveals a New Pathogen-Specific Immune Response
    1
    1. scibot 05 Nov 2018
      RRID: SCR_015687

      Curator: @Jmenke

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      (DESeq2, RRID:SCR_015687)

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    sciencedirect.com/science/article/pii/S0960982218300319
  97. www.sciencedirect.com www.sciencedirect.com
    PNPT1 Release from Mitochondria during Apoptosis Triggers Decay of Poly(A) RNAs
    1
    1. scibot 05 Nov 2018
      RRID:SCR_015687

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      (DESeq2, RRID:SCR_015687)

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    sciencedirect.com/science/article/pii/S0092867418305105
  98. www.sciencedirect.com www.sciencedirect.com
    Lineage-Determining Transcription Factor TCF-1 Initiates the Epigenetic Identity of T Cells
    1
    1. scibot 05 Nov 2018
      RRID:SCR_015687

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      (DESeq2, RRID:SCR_015687)

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    sciencedirect.com/science/article/pii/S1074761318300335
  99. www.sciencedirect.com www.sciencedirect.com
    Dissecting the Causal Mechanism of X-Linked Dystonia-Parkinsonism by Integrating Genome and Transcriptome Assembly
    1
    1. scibot 05 Nov 2018
      RRID:SCR_015687

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      (DESeq2, RRID:SCR_015687)

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    sciencedirect.com/science/article/pii/S0092867418301557
  100. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Forniceal deep brain stimulation induces gene expression and splicing changes that promote neurogenesis and plasticity
    1
    1. scibot 05 Nov 2018
      RRID:SCR_015687

      Curator: @evieth

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      (DESeq2, RRID:SCR_015687)

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    ncbi.nlm.nih.gov/pmc/articles/PMC5906096/
  101. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
    1
    1. scibot 05 Nov 2018
      RRID:SCR_015687

      Curator: @evieth

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      (DESeq2, RRID:SCR_015687)

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    ncbi.nlm.nih.gov/pmc/articles/PMC5898914/
  102. www.sciencedirect.com www.sciencedirect.com
    Insm1 Induces Neural Progenitor Delamination in Developing Neocortex via Downregulation of the Adherens Junction Belt-Specific Protein Plekha7
    1
    1. scibot 05 Nov 2018
      RRID:SCR_015687

      Resource used:

      (DESeq2, RRID:SCR_015687)

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    sciencedirect.com/science/article/pii/S0896627318300771
  103. www.sciencedirect.com www.sciencedirect.com
    The Dynamic Landscape of Open Chromatin during Human Cortical Neurogenesis
    1
    1. scibot 05 Nov 2018
      RRID:SCR_015687

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      (DESeq2, RRID:SCR_015687)

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    sciencedirect.com/science/article/pii/S0092867417314940
  104. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Microbiome Influences Prenatal and Adult Microglia in a Sex-Specific Manner
    1
    1. scibot 05 Nov 2018
      RRID:SCR_015687

      Curator: @evieth

      Resource used:

      (DESeq2, RRID:SCR_015687)

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    ncbi.nlm.nih.gov/pmc/articles/PMC5786503/
  105. europepmc.org europepmc.org
    Untitled document
    1
    1. scibot 05 Nov 2018
      RRID:SCR_015687

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      (DESeq2, RRID:SCR_015687)

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    europepmc.org/articles/PMC5665647/
  106. Nov 2017
  107. www.sciencedirect.com www.sciencedirect.com
    Chemical Proteomics Identifies Druggable Vulnerabilities in a Genetically Defined Cancer
    1
    1. scibot 08 Nov 2017
      DESeq2

      Curator: @Jmenke

      Resource used:

      (DESeq2, RRID:SCR_015687)

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    sciencedirect.com/science/article/pii/S0092867417310474
  108. www.sciencedirect.com www.sciencedirect.com
    Hippo Reprograms the Transcriptional Response to Ras Signaling
    1
    1. scibot 08 Nov 2017
      DESeq2

      Curator: @Jmenke

      Resource used:

      (DESeq2, RRID:SCR_015687)

      SciCrunch record: RRID:SCR_015687

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    sciencedirect.com/science/article/pii/S1534580717306731