The three dimensional framework can be visualized as a 3D coordinate system. The x-axis represents the Data Plane, with each point a unique hash of a dataset. The y-axis represents the Account Plane, with each point a collision-free public key. The z-axis represents the Time Plane, with each point a timestamped hash recorded on a blockchain or hash-registry.
GraphTopologySenseMaking
Generally graphs are visualised in an abstract relational space. You are describing here a 3 dimensional map (or rather a 2-dimensional map with a time dimension). the image above it does not seem to reflect such a space and the added benefits of working in a concrete mapable space are not immediately clear to me.