17 Matching Annotations
  1. Oct 2022
    1. The oxidation of, or removal of an electron from, a molecule (whether accompanied with the removal of an accompanying proton or not) results in a change of free energy for that molecule - matter, internal energy, and entropy have all changed in the process.

      What does oxidation (removal of an electron from a molecule change about Delta G?

    2. Each of these two types of molecules is involved in energy transfer that involve different classes of chemical reactions. It's interesting that while one class of carrier delivers electrons (and energy), the other delivers phosphates (and energy), but both include an adenine nucleotide(s).

      What does ATP carry and what does NADH carry? How are they similar?

    3. In this course we will examine two major types of molecular recyclable energy carriers: (1) nicotinamide adenine dinucleotide (NAD+), a close relative nicotinamide adenine dinucleotide phosphate (NADP+), and flavin adenine dinucleotide (FAD2+) and (2) nucleotide mono-, di- and triphosphates, with particular attention paid to adenosine triphosphate (ATP).

      What are the two major types of molecular recyclable energy carriers?

    4. Using the Nerst equation essentially corrects for the  number of electrons per transfer (here n = 2) and puts things into units biologists can use, and copes with the directionality (sign) for us. F has units of kJ*/volt, E has units of (Volts), so we end up with kJ, a unit of energy.

      What units are used for n, F, E0’, and the final delta G0’

    5. Different compounds, based on their structure and atomic composition, have intrinsic and distinct attractions for electrons. This quality is termed reduction potential or E0’ and is a relative quantity (relative by comparison to some “standard” reaction).

      What does a reduction potential depend on? What units does it use?

    6. If you consider a generic redox reaction and reflect back on the thermodynamic lectures, what factor will determine whether a redox reaction will proceed in a particular direction spontaneously, and what might determine its rate?

      The E0’ potentials can be used to determine the change in delta G and if the delta G is negative then the reaction will proceed spontaneously. If its a negative or a positive delta G it will also determine what direction the reaction will go.

    7. Sometimes a redox tower will list compounds in order of decreasing redox potentials (high values on top and low values on the bottom). Our towers do not- we list (reduced vs. oxidized state) molecule pairs with negative values (highly negative E˚') up top and positive ones (highly positive E˚') towards the bottom. Does presenting the data this way change the redox potential of a compound?

      I don’t think it changes it, It is just a different way of looking at it. Like a reverse. It does not change the potential or the maths.

    8. The ETC produces a proton gradient. No ATP is directly generated in this process. However, the proton gradient is then used by the cell (among other things) to run an enzyme called ATP synthase which catalyzes the reaction ADP + Pi --> ATP. This method of ATP production (called oxidative respiration) results in additional- many additional- ATPs being produced.

      How are further ATP’s Produced through the proton gradient?