By mapping these sites onto a predicted secondary structure of ZIKV 3′UTR, we found all three sites to be present on stem-loop structures, which are considered optimal for MSI binding
Uren et al., (2015) investigated the mechanism of action of the RNA-binding protein MSI1 to help identify target genes. Using individual-nucleotide resolution cross-linking and immunoprecipitation, researchers found that MSI1 prefers UAG sequences with a specific structure, especially in the 3’ untranslated region. MSI1 target RNAs encode proteins involved in cell proliferation and adhesion, known to underlie the spread of glioblastomas.