63 Matching Annotations
  1. Aug 2024
  2. www.nature.com www.nature.com
    Table 3 Antibodies/Staining substrates used in studies
    1
    1. scibot 02 Aug 2024
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      DOI: 10.1038/s41596-021-00658-3

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    nature.com/articles/s41596-021-00658-3/tables/3
  3. Jun 2024
  4. www.sciencedirect.com www.sciencedirect.com
    Time-resolved fate mapping identifies the intestinal upper crypt zone as an origin of Lgr5+ crypt base columnar cells
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    1. scibot 07 Jun 2024
      RRID:AB_2146667

      DOI: 10.1016/j.cell.2024.05.001

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    sciencedirect.com/science/article/pii/S0092867424004914
  5. May 2024
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    The evolutionarily ancient FOXA transcription factors shape the murine gut microbiome via control of epithelial glycosylation
    1
    1. scibot 31 May 2024
      RRID:AB_2146667

      DOI: 10.1016/j.devcel.2024.05.006

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    sciencedirect.com/science/article/pii/S153458072400323X
  7. www.sciencedirect.com www.sciencedirect.com
    IL-22 promotes mucin-type O-glycosylation and MATH1+ cell-mediated amelioration of intestinal inflammation
    1
    1. scibot 14 May 2024
      RRID:AB_2146667

      DOI: 10.1016/j.celrep.2024.114206

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    sciencedirect.com/science/article/pii/S2211124724005345
  8. Mar 2024
  9. www.sciencedirect.com www.sciencedirect.com
    SIRT4 loss reprograms intestinal nucleotide metabolism to support proliferation following perturbation of homeostasis
    2
    1. scibot 22 Mar 2024
      RRID:AB_2146667

      DOI: 10.1016/j.celrep.2024.113975

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    2. scibot 22 Mar 2024
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      DOI: 10.1016/j.celrep.2024.113975

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    sciencedirect.com/science/article/pii/S2211124724003036
  10. Sep 2023
  11. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Innate Mechanism of Mucosal Barrier Erosion in the Pathogenesis of Acquired Colitis
    1
    1. scibot 28 Sep 2023
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      DOI: 10.1016/j.isci.2023.107883

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    ncbi.nlm.nih.gov/pmc/articles/PMC10518488/
  12. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Colitis-induced upregulation of tumor necrosis factor receptor-2 (TNFR2) terminates epithelial regenerative signaling to restore homeostasis
    1
    1. scibot 23 Sep 2023
      RRID:AB_sc-15334

      DOI: 10.1016/j.isci.2023.107829

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    ncbi.nlm.nih.gov/pmc/articles/PMC10510063/
  13. Jul 2023
  14. www.sciencedirect.com www.sciencedirect.com
    Interactions between host and intestinal crypt-resided biofilms are controlled by epithelial fucosylation
    1
    1. scibot 06 Jul 2023
      RRID:AB_2146667

      DOI: 10.1016/j.celrep.2023.112754

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    sciencedirect.com/science/article/pii/S2211124723007659
  15. Jun 2023
  16. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Translational Physiology: A human Barrett’s esophagus organoid system reveals epithelial-mesenchymal plasticity induced by acid and bile salts
    1
    1. scibot 03 Jun 2023
      RRID:AB_2146667

      DOI: 10.1152/ajpgi.00017.2022

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    ncbi.nlm.nih.gov/pmc/articles/PMC9109796/
  17. www.sciencedirect.com www.sciencedirect.com
    Prolonged dysbiosis and altered immunity under nutritional intervention in a physiological mouse model of severe acute malnutrition
    1
    1. scibot 02 Jun 2023
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      DOI: 10.1016/j.isci.2023.106910

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    sciencedirect.com/science/article/pii/S2589004223009872
  18. May 2023
  19. www.sciencedirect.com www.sciencedirect.com
    Mucolytic bacteria license pathobionts to acquire host-derived nutrients during dietary nutrient restriction
    1
    1. scibot 05 May 2023
      RRID:AB_2146667

      DOI: 10.1016/j.celrep.2022.111093

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    sciencedirect.com/science/article/pii/S2211124722008956
  20. www.science.org www.science.org
    BMP signaling in the intestinal epithelium drives a critical feedback loop to restrain IL-13–driven tuft cell hyperplasia
    1
    1. scibot 05 May 2023
      RRID:AB_2146667

      DOI: 10.1126/sciimmunol.abl6543

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    science.org/doi/10.1126/sciimmunol.abl6543
  21. Apr 2023
  22. www.sciencedirect.com www.sciencedirect.com
    Impact of particulate microplastics generated from polyethylene terephthalate on gut pathology and immune microenvironments
    1
    1. scibot 08 Apr 2023
      RRID:AB_2146667

      DOI: 10.1016/j.isci.2023.106474

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    sciencedirect.com/science/article/pii/S2589004223005515
  23. Mar 2023
  24. www.nature.com www.nature.com
    Mechanosensitive extrusion of Enterovirus A71-infected cells from colonic organoids
    1
    1. scibot 14 Mar 2023
      RRID:AB_2146667

      DOI: 10.1038/s41564-023-01339-5

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    nature.com/articles/s41564-023-01339-5
  25. Nov 2022
  26. www.sciencedirect.com www.sciencedirect.com
    Suspension culture in a rotating bioreactor for efficient generation of human intestinal organoids
    1
    1. scibot 16 Nov 2022
      RRID:AB_2146667

      DOI: 10.1016/j.crmeth.2022.100337

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    sciencedirect.com/science/article/pii/S266723752200234X
  27. Oct 2022
  28. www.sciencedirect.com www.sciencedirect.com
    Nociceptor neurons direct goblet cells via a CGRP-RAMP1 axis to drive mucus production and gut barrier protection
    1
    1. scibot 19 Oct 2022
      RRID:AB_2146667

      DOI: 10.1016/j.cell.2022.09.024

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    sciencedirect.com/science/article/pii/S0092867422011965
  29. Sep 2022
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The NHE3 Inhibitor Tenapanor Prevents Intestinal Obstructions in CFTR-Deleted Mice
    1
    1. scibot 14 Sep 2022
      RRID:AB_2146667

      DOI: 10.3390/ijms23179993

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    ncbi.nlm.nih.gov/pmc/articles/PMC9456459/
  31. Mar 2022
  32. www.sciencedirect.com www.sciencedirect.com
    A nonredundant role for T cell-derived interleukin 22 in antibacterial defense of colonic crypts
    1
    1. scibot 09 Mar 2022
      RRID:AB_2146667

      DOI: 10.1016/j.immuni.2022.02.003

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    sciencedirect.com/science/article/pii/S1074761322000838
  33. Feb 2022
  34. www.sciencedirect.com www.sciencedirect.com
    Suspension culture promotes serosal mesothelial development in human intestinal organoids
    1
    1. scibot 16 Feb 2022
      RRID:AB_2146667

      DOI: 10.1016/j.celrep.2022.110379

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    sciencedirect.com/science/article/pii/S2211124722001000
  35. Jan 2022
  36. www.sciencedirect.com www.sciencedirect.com
    IL-17RA-signaling in Lgr5+ intestinal stem cells induces expression of transcription factor ATOH1 to promote secretory cell lineage commitment
    1
    1. scibot 27 Jan 2022
      RRID:AB_2146667

      DOI: 10.1016/j.immuni.2021.12.016

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    sciencedirect.com/science/article/pii/S1074761321005525
  37. www.sciencedirect.com www.sciencedirect.com
    Adaptive differentiation promotes intestinal villus recovery
    1
    1. scibot 11 Jan 2022
      RRID:AB_2146667

      DOI: 10.1016/j.devcel.2021.12.012

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    sciencedirect.com/science/article/abs/pii/S1534580721010327
  38. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Bacterial-driven inflammation and mutant BRAF expression combine to promote murine colon tumorigenesis that is sensitive to immune checkpoint therapy
    1
    1. scibot 03 Jan 2022
      RRID:AB_2146667

      DOI: 10.1158/2159-8290.CD-20-0770

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    ncbi.nlm.nih.gov/pmc/articles/PMC8295175/
  39. Dec 2021
  40. www.sciencedirect.com www.sciencedirect.com
    Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polyps
    1
    1. scibot 15 Dec 2021
      RRID:AB_2146667

      DOI: 10.1016/j.cell.2021.11.031

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    sciencedirect.com/science/article/pii/S0092867421013817
  41. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Epithelial Wnt secretion drives the progression of inflammation-induced colon carcinoma in murine model
    1
    1. scibot 01 Dec 2021
      RRID:AB_2146667

      DOI: 10.1016/j.isci.2021.103369

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    ncbi.nlm.nih.gov/pmc/articles/PMC8607204/
  42. Oct 2021
  43. www.nature.com www.nature.com
    Controlling the polarity of human gastrointestinal organoids to investigate epithelial biology and infectious diseases
    1
    1. scibot 23 Oct 2021
      RRID:AB_2146667

      DOI: 10.1038/s41596-021-00607-0

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    nature.com/articles/s41596-021-00607-0
  44. Aug 2021
  45. journals.physiology.org journals.physiology.org
    Vitamin D deficiency enhances expression of autophagy-regulating miR-142-3p in mouse and 'involved' IBD patient intestinal tissues
    1
    1. scibot 16 Aug 2021
      RRID:AB_2146667

      DOI: 10.1152/ajpgi.00398.2020

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    journals.physiology.org/doi/abs/10.1152/ajpgi.00398.2020
  46. www.nature.com www.nature.com
    Estrogen-related receptor alpha (ERRα) is a key regulator of intestinal homeostasis and protects against colitis
    1
    1. scibot 14 Aug 2021
      RRID:AB_2146667

      DOI: 10.1038/s41598-021-94499-5

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    nature.com/articles/s41598-021-94499-5
  47. www.sciencedirect.com www.sciencedirect.com
    Untitled document
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    1. scibot 09 Aug 2021
      RRID:AB_2146667

      DOI: 10.1016/j.stem.2018.11.016

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    sciencedirect.com/science/article/pii/S1934590918305526
  48. www.sciencedirect.com www.sciencedirect.com
    Untitled document
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    1. scibot 06 Aug 2021
      RRID:AB_2146667

      DOI: 10.1016/j.chom.2018.11.002

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    sciencedirect.com/science/article/pii/S1931312818305596
  49. www.sciencedirect.com www.sciencedirect.com
    Tracing colonic embryonic transcriptional profiles and their reactivation upon intestinal damage
    1
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      RRID:AB_2146667

      DOI: 10.1016/j.celrep.2021.109484

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    sciencedirect.com/science/article/pii/S2211124721009116
  50. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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      RRID:AB_2146667

      DOI: 10.1016/j.celrep.2019.01.108

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    ncbi.nlm.nih.gov/pmc/articles/PMC6391775/
  51. Jul 2021
  52. www.sciencedirect.com www.sciencedirect.com
    An Interleukin-23-Interleukin-22 Axis Regulates Intestinal Microbial Homeostasis to Protect from Diet-Induced Atherosclerosis
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    1. scibot 30 Jul 2021
      RRID:AB_2146667

      DOI: 10.1016/j.immuni.2018.09.011

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    sciencedirect.com/science/article/pii/S1074761318304266
  53. www.sciencedirect.com www.sciencedirect.com
    Controlling Epithelial Polarity: A Human Enteroid Model for Host-Pathogen Interactions
    1
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      DOI: 10.1016/j.celrep.2019.01.108

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    sciencedirect.com/science/article/pii/S2211124719301457
  54. May 2021
  55. www.sciencedirect.com www.sciencedirect.com
    Charting human development using a multi-endodermal organ atlas and organoid models
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    1. scibot 21 May 2021
      RRID:AB_2146667

      DOI: 10.1016/j.cell.2021.04.028

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    sciencedirect.com/science/article/pii/S0092867421005316
  56. www.sciencedirect.com www.sciencedirect.com
    Paneth Cell-Derived Lysozyme Defines the Composition of Mucolytic Microbiota and the Inflammatory Tone of the Intestine
    1
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      RRID:AB_2146667

      DOI: 10.1016/j.immuni.2020.07.010

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    sciencedirect.com/science/article/pii/S1074761320303174
  57. www-sciencedirect-com.ezproxy.auckland.ac.nz www-sciencedirect-com.ezproxy.auckland.ac.nz
    Transit-Amplifying Cells Coordinate Changes in Intestinal Epithelial Cell-Type Composition
    1
    1. scibot 06 May 2021
      RRID:AB_2146667

      DOI: 10.1016/j.devcel.2020.12.020

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    www-sciencedirect-com.ezproxy.auckland.ac.nz/science/article/pii/S1534580720310261
  58. Nov 2020
  59. www.cell.com www.cell.com
    Gut Bacteria Shape Intestinal Microhabitats Occupied by the Fungus Candida albicans
    1
    1. scibot 21 Nov 2020
      RRID:AB_2146667

      DOI: 10.1016/j.cub.2020.09.027

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    cell.com/current-biology/abstract/S0960-9822(20)31358-0
  60. physoc.onlinelibrary.wiley.com physoc.onlinelibrary.wiley.com
    Elevated adenomatous polyposis coli in goblet cells is associated with inflammation in mouse and human colon
    1
    1. scibot 11 Nov 2020
      RRID:AB_2146667

      DOI: 10.1113/EP088970

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    physoc.onlinelibrary.wiley.com/doi/10.1113/EP088970
  61. Oct 2020
  62. www.sciencedirect.com www.sciencedirect.com
    Dietary Emulsifiers Directly Impact Adherent-Invasive E. coli Gene Expression to Drive Chronic Intestinal Inflammation
    1
    1. scibot 07 Oct 2020
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      DOI: 10.1016/j.celrep.2020.108229

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  63. Sep 2020
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  65. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Critical Role of Type III Interferon in Controlling SARS-CoV-2 Infection in Human Intestinal Epithelial Cells
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  66. journals.physiology.org journals.physiology.org
    Grading TESI: Crypt and villus formation in tissue-engineered small intestine alters with stem/progenitor cell source | American Journal of Physiology-Gastrointestinal and Liver Physiology
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  67. Jan 2020
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    PRDM16 Maintains Homeostasis of the Intestinal Epithelium by Controlling Region-Specific Metabolism
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    Recovery of the Gut Microbiota after Antibiotics Depends on Host Diet, Community Context, and Environmental Reservoirs
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    Mucus Architecture and Near-Surface Swimming Affect Distinct Salmonella Typhimurium Infection Patterns along the Murine Intestinal Tract
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  72. Nov 2018
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    Paneth Cells Respond to Inflammation and Contribute to Tissue Regeneration by Acquiring Stem-like Features through SCF/c-Kit Signaling
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    Paneth Cell Multipotency Induced by Notch Activation following Injury
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    Reconstruction of the Human Colon Epithelium In Vivo
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    Developmental History Provides a Roadmap for the Emergence of Tumor Plasticity
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    Salmonella Typhi Colonization Provokes Extensive Transcriptional Changes Aimed at Evading Host Mucosal Immune Defense During Early Infection of Human Intestinal Tissue
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    YAP/TAZ-Dependent Reprogramming of Colonic Epithelium Links ECM Remodeling to Tissue Regeneration
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    Fiber-Mediated Nourishment of Gut Microbiota Protects against Diet-Induced Obesity by Restoring IL-22-Mediated Colonic Health
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    Unsupervised Trajectory Analysis of Single-Cell RNA-Seq and Imaging Data Reveals Alternative Tuft Cell Origins in the Gut
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  84. Nov 2017
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    Generation of Mouse and Human Organoid-Forming Intestinal Progenitor Cells by Direct Lineage Reprogramming
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    Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation
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    Intestinal Enteroendocrine Lineage Cells Possess Homeostatic and Injury-Inducible Stem Cell Activity
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    Differentiation of Human Pluripotent Stem Cells into Colonic Organoids via Transient Activation of BMP Signaling
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    Mex3a Marks a Slowly Dividing Subpopulation of Lgr5+ Intestinal Stem Cells
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