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    A CTCF-binding site in the Mdm1-Il22-Ifng locus shapes cytokine expression profiles and plays a critical role in early Th1 cell fate specification
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      DOI: 10.1016/j.immuni.2024.04.007

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    sciencedirect.com/science/article/pii/S1074761324002127
  3. Apr 2024
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    SAFB restricts contact domain boundaries associated with L1 chimeric transcription
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    sciencedirect.com/science/article/pii/S1097276524002314
  5. Jan 2024
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    PCGF6 controls murine Tuft cell differentiation via H3K9me2 modification independently of Polycomb repression
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      DOI: 10.1016/j.devcel.2023.12.015

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    sciencedirect.com/science/article/pii/S1534580723006962
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    ZNF143 deletion alters enhancer/promoter looping and CTCF/cohesin geometry
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    sciencedirect.com/science/article/pii/S2211124723016741
  8. Dec 2023
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    Super-enhancers include classical enhancers and facilitators to fully activate gene expression
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      DOI: 10.1016/j.cell.2023.11.030

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    sciencedirect.com/science/article/pii/S0092867423013168
  10. Mar 2023
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    Structural elements promote architectural stripe formation and facilitate ultra-long-range gene regulation at a human disease locus
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    sciencedirect.com/science/article/pii/S1097276523001661
  12. Feb 2023
  13. www.science.org www.science.org
    Multiscale 3D genome reorganization during skeletal muscle stem cell lineage progression and aging
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      DOI: 10.1126/sciadv.abo1360

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    science.org/doi/10.1126/sciadv.abo1360
  14. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multiscale 3D genome reorganization during skeletal muscle stem cell lineage progression and aging
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    ncbi.nlm.nih.gov/pmc/articles/PMC9937580/
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    A de novo transcription-dependent TAD boundary underpins critical multiway interactions during antibody class switch recombination
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    sciencedirect.com/science/article/pii/S1097276523000370
  16. Dec 2022
  17. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A novel intergenic enhancer that regulates Bdnf expression in developing cortical neurons
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      DOI: 10.1016/j.isci.2022.105695

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    ncbi.nlm.nih.gov/pmc/articles/PMC9792897/
  18. Nov 2022
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    Essential role of MESP1-RING1A complex in cardiac differentiation
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    sciencedirect.com/science/article/pii/S1534580722007614
  20. Oct 2022
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    Chromatin jets define the properties of cohesin-driven in vivo loop extrusion
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    1. scibot 05 Oct 2022
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    sciencedirect.com/science/article/pii/S1097276522008541
  22. May 2022
  23. www.nature.com www.nature.com
    Alcohol induced increases in sperm Histone H3 lysine 4 trimethylation correlate with increased placental CTCF occupancy and altered developmental programming
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    1. scibot 26 May 2022
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      DOI: 10.1038/s41598-022-12188-3

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    nature.com/articles/s41598-022-12188-3
  24. Apr 2022
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    Promoter and enhancer RNAs regulate chromatin reorganization and activation of miR-10b/HOXD locus, and neoplastic transformation in glioma
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    sciencedirect.com/science/article/pii/S1097276522002568
  26. Feb 2022
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    HOTTIP-dependent R-loop formation regulates CTCF boundary activity and TAD integrity in leukemia
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    sciencedirect.com/science/article/pii/S1097276522000570
  28. Dec 2021
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    Jpx RNA regulates CTCF anchor site selection and formation of chromosome loops
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      DOI: 10.1016/j.cell.2021.11.012

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    sciencedirect.com/science/article/pii/S0092867421013271
  30. Aug 2021
  31. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    ncbi.nlm.nih.gov/pmc/articles/PMC6344341/
  32. www.nature.com www.nature.com
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    nature.com/articles/s41586-018-0845-0 
  33. Jul 2021
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    Gain of CTCF-Anchored Chromatin Loops Marks the Exit from Naive Pluripotency
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    sciencedirect.com/science/article/pii/S2405471218303892
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    Architectural Proteins and Pluripotency Factors Cooperate to Orchestrate the Transcriptional Response of hESCs to Temperature Stress
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    sciencedirect.com/science/article/pii/S1097276518305811
  36. www.cell.com www.cell.com
    Transcription-mediated supercoiling regulates genome folding and loop formation
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    cell.com/molecular-cell/fulltext/S1097-2765(21)00456-1
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    Interplay between CTCF boundaries and a super enhancer controls cohesin extrusion trajectories and gene expression
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    sciencedirect.com/science/article/pii/S109727652100455X
  38. Jun 2021
  39. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Suv4-20h2 protects against influenza virus infection by suppression of chromatin loop formation
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    ncbi.nlm.nih.gov/pmc/articles/PMC8209278/
  40. May 2021
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    Balancing cohesin eviction and retention prevents aberrant chromosomal interactions, Polycomb-mediated repression, and X-inactivation
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    sciencedirect.com/science/article/pii/S1097276521001416
  42. Apr 2021
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    STAG2 mutations alter CTCF-anchored loop extrusion, reduce cis-regulatory interactions and EWSR1-FLI1 activity in Ewing sarcoma
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      DOI: 10.1016/j.ccell.2021.04.001

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    sciencedirect.com/science/article/pii/S1535610821002087
  44. Feb 2021
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    Distinct properties and functions of CTCF revealed by a rapidly inducible degron system
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      DOI: 10.1016/j.celrep.2021.108783

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    sciencedirect.com/science/article/pii/S2211124721000966
  46. Nov 2020
  47. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Activation of Clustered IFNγ Target Genes Drives Cohesin-Controlled Transcriptional Memory
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      DOI: 10.1016/j.molcel.2020.10.005

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    pubmed.ncbi.nlm.nih.gov/33108759/
  48. Sep 2020
  49. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Loss of Extreme Long-Range Enhancers in Human Neural Crest Drives a Craniofacial Disorder
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      DOI: 10.1016/j.stem.2020.09.001

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    pubmed.ncbi.nlm.nih.gov/32991838/
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    Cohesin Removal Reprograms Gene Expression upon Mitotic Entry
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      DOI: 10.1016/j.molcel.2020.01.023

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    sciencedirect.com/science/article/pii/S1097276520300447
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    Enhancer RNAs Mediate Estrogen-Induced Decommissioning of Selective Enhancers by Recruiting ERα and Its Cofactor
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      DOI: 10.1016/j.celrep.2020.107803

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    sciencedirect.com/science/article/pii/S2211124720307841
  52. www.cell.com www.cell.com
    Repression of Transcription at DNA Breaks Requires Cohesin throughout Interphase and Prevents Genome Instability
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      DOI: 10.1016/j.molcel.2018.11.001

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    cell.com/molecular-cell/abstract/S1097-2765(18)30943-2
  53. Jan 2020
  54. www.sciencedirect.com www.sciencedirect.com
    A Pliable Mediator Acts as a Functional Rather Than an Architectural Bridge between Promoters and Enhancers
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      DOI: 10.1016/j.cell.2019.07.011

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    sciencedirect.com/science/article/pii/S0092867419307767
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    The ChAHP Complex Counteracts Chromatin Looping at CTCF Sites that Emerged from SINE Expansions in Mouse
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      DOI: 10.1016/j.cell.2019.08.007

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    sciencedirect.com/science/article/pii/S0092867419308955
  56. www.sciencedirect.com www.sciencedirect.com
    Topoisomerase II-Induced Chromosome Breakage and Translocation Is Determined by Chromosome Architecture and Transcriptional Activity
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      DOI: 10.1016/j.molcel.2019.04.030

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    sciencedirect.com/science/article/pii/S1097276519303223
  57. www.sciencedirect.com www.sciencedirect.com
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      DOI: 10.1016/j.cub.2019.02.007

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    sciencedirect.com/science/article/pii/S0960982219301460
  58. www.nature.com www.nature.com
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    nature.com/articles/s41586-018-0845-0
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      DOI: 10.1016/j.molcel.2018.11.001

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    sciencedirect.com/science/article/pii/S1097276518309432
  60. Nov 2018
  61. www.sciencedirect.com www.sciencedirect.com
    The Nuclear Receptor PPARγ Controls Progressive Macrophage Polarization as a Ligand-Insensitive Epigenomic Ratchet of Transcriptional Memory
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    sciencedirect.com/science/article/pii/S1074761318303960
  62. www.sciencedirect.com www.sciencedirect.com
    Polymer Simulations of Heteromorphic Chromatin Predict the 3D Folding of Complex Genomic Loci
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    sciencedirect.com/science/article/pii/S1097276518307871
  63. elifesciences.org elifesciences.org
    Computational prediction of CTCF/cohesin-based intra-TAD loops that insulate chromatin contacts and gene expression in mouse liver
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      RRID:AB_2176601 RRIDCUR:Validated
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    elifesciences.org/articles/34077
  64. www.sciencedirect.com www.sciencedirect.com
    HMGB2 Loss upon Senescence Entry Disrupts Genomic Organization and Induces CTCF Clustering across Cell Types
    1
    1. scibot 05 Nov 2018
      RRID:AB_2176601

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      (Abcam Cat# ab992, RRID:AB_2176601)

      SciCrunch record: RRID:AB_2176601

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      RRID:AB_2176601
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    sciencedirect.com/science/article/pii/S1097276518302338
  65. www.sciencedirect.com www.sciencedirect.com
    Cohesin Loss Eliminates All Loop Domains
    1
    1. scibot 05 Nov 2018
      RRID:AB_2176601

      Resource used:

      (Abcam Cat# ab992, RRID:AB_2176601)

      SciCrunch record: RRID:AB_2176601

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      RRID:AB_2176601
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    sciencedirect.com/science/article/pii/S0092867417311200
  66. Nov 2017
  67. www.sciencedirect.com www.sciencedirect.com
    Genome Organization Drives Chromosome Fragility
    1
    1. scibot 08 Nov 2017
      AB_2176601

      Curator: @chewbeccax

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      (Abcam Cat# ab992, RRID:AB_2176601)

      SciCrunch record: RRID:AB_2176601

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      RRID:AB_2176601 RRIDCUR:Validated
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    sciencedirect.com/science/article/pii/S0092867417307183
  68. www.sciencedirect.com www.sciencedirect.com
    Multi-tiered Reorganization of the Genome during B Cell Affinity Maturation Anchored by a Germinal Center-Specific Locus Control Region
    1
    1. scibot 08 Nov 2017
      RRID: AB_2176601

      Curator: @chewbeccax

      Resource used:

      (Abcam Cat# ab992, RRID:AB_2176601)

      SciCrunch record: RRID:AB_2176601

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      RRID:AB_2176601
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    sciencedirect.com/science/article/pii/S1074761316303363