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Aug 2025
elifesciences.org elifesciences.org

Segment-specific axon guidance by Wnt/Fz signaling diversifies motor commands in Drosophila larvae

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1. scibot 21 Aug 2025
  
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  DOI: 10.7554/eLife.98624.2
  
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Innexin DNA-binding domains regulate Microplitis bicoloratus bracoviral transcription in symbiotic wasps

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PALB2 and 53BP1 govern post-resection homologous recombination DNA repair

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sciencedirect.com/science/article/pii/S1097276525006045
Jul 2025
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41556_2025_1712_MOESM4_ESM-html.html

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52.53.155.43/e8133be4a6a5cba631389479a5d84b0633fcb0c3/41556_2025_1712_MOESM4_ESM-html.html
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Glucose-activated JMJD1A drives visceral adipogenesis via α-ketoglutarate-dependent chromatin remodeling

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Identification of New Key Players for Ferrous Iron Export in the Asymmetric Inner Gate of Human Ferroportin 1

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  DOI: 10.1096/fj.202500790RR
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12246770/
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Spatiotemporally Resolved Profiling of Protein Movement by TransitID

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  DOI: 10.1007/978-1-0716-4694-6_16
  
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RNF13 is a novel interactor of iduronate 2-sulfatase that modifies its glycosylation and maturation

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  DOI: 10.1101/2025.06.20.660705
  
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biorxiv.org/content/10.1101/2025.06.20.660705v1
Jun 2025
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Cul4 ubiquitin ligase cofactor DCAF12 promotes neurotransmitter release and homeostatic plasticity

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  DOI: 10.1083/jcb.201805099
  
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pmc.ncbi.nlm.nih.gov/articles/PMC6400570/
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Rapid memory shift between different synaptic ensembles promotes forgetting in Drosophila

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  DOI: 10.1016/j.cub.2025.05.047
  
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sciencedirect.com/science/article/pii/S0960982225006633
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Aberrant phase separation of two PKA RIβ neurological disorder mutants leads to mechanistically distinct signaling deficits

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  DOI: 10.1016/j.celrep.2025.115797
  
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EGFR phosphorylates DNAJB1 to suppress α-synuclein aggregation in Parkinson’s disease

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  DOI: 10.1038/s41531-025-01006-y
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12145416/
May 2025
52.53.155.43 52.53.155.43

Phagocytosis-driven neurodegeneration through opposing roles of an ABC transporter in neurons and phagocytes

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1. scibot 20 May 2025
  
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  DOI: 10.1126/sciadv.adr5448
  
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52.53.155.43/0b98c384f51175ebe97248a064718833b2e43097/sciadv.adr5448_sm-html.html
Mar 2025
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Amplified dosage of the NKX2-1 lineage transcription factor controls its oncogenic role in lung adenocarcinoma

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  DOI: 10.1016/j.molcel.2025.03.001
  
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PDZD8 promotes autophagy at ER-lysosome membrane contact sites to regulate activity-dependent synaptic growth

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  DOI: 10.1016/j.celrep.2025.115483
  
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sciencedirect.com/science/article/pii/S2211124725002542
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science.adh0037_sm-html.html

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  DOI: 10.3389/fendo.2022.895502
  
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52.53.155.43/2c5355b36b56ff7db7b4751c1c21172c56eb6707/NIHMS1997360-supplement-Materials_and_Methods_Supplementary_Text_Figs__S1_to_S8_Tables_S1__S2__S4_to_S6 (3)-html.html
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Short internal open reading frames repress the translation of N-terminally truncated proteoforms

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1. scibot 27 Mar 2025
  
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  DOI: 10.1038/s44319-025-00390-z
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11933307/
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A delta-tubulin/epsilon-tubulin/Ted protein complex is required for centriole architecture

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1. scibot 13 Mar 2025
  
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  DOI: 10.7554/eLife.98704
  
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Ectopic protein lysine methacrylation contributes to defects caused by loss of HIBCH or ECHS1

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  DOI: 10.1016/j.celrep.2025.115379
  
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Ingestion of Food Particles Regulates the Mechanosensing Misshapen-Yorkie Pathway in Drosophila Intestinal Growth

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  DOI: 10.1016/j.devcel.2018.04.014
  
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pmc.ncbi.nlm.nih.gov/articles/PMC7480018/
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The NF1 tumor suppressor regulates PD-L1 and immune evasion in melanoma

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  DOI: 10.1016/j.celrep.2025.115365
  
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sciencedirect.com/science/article/pii/S2211124725001366
Feb 2025
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The deubiquitylating enzyme Fat facets promotes Fat signalling and restricts tissue growth

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  DOI: 10.1038/s41467-025-57164-3
  
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link.springer.com/article/10.1038/s41467-025-57164-3
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Repurposing NAMPT inhibitors for germinal center B-cell-like diffuse large B-cell lymphoma

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  DOI: 10.1158/2643-3230.BCD-24-0020
  
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aacrjournals.org/bloodcancerdiscov/article/5/6/417/749227/Repurposing-NAMPT-Inhibitors-for-Germinal-Center-B
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A delta-tubulin/epsilon-tubulin/Ted protein complex is required for centriole architecture

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1. scibot 07 Feb 2025
  
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  DOI: 10.7554/eLife.98704.2
  
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Jan 2025
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Redox proteomics reveal a role for peroxiredoxinylation in stress protection

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  DOI: 10.1016/j.celrep.2024.115224
  
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Complexes of vertebrate TMC1/2 and CIB2/3 proteins form hair-cell mechanotransduction cation channels

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  DOI: 10.7554/eLife.89719
  
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Adoptive T cell therapy targeting an inducible and broadly shared product of aberrant mRNA translation

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  DOI: 10.1016/j.immuni.2024.12.004
  
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Design and Generation of TEMPO Reagents for Sequential Labeling and Manipulation of Vertebrate Cell Lineages

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  DOI: 10.1007/978-1-0716-4310-5_17
  
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mRNA decay pre-complex assembly drives timely cell-state transitions during differentiation

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  DOI: 10.1016/j.celrep.2024.115138
  
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cell.com/cell-reports/fulltext/S2211-1247(24)01489-X
Dec 2024
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

A neurotrophin functioning with a Toll regulates structural plasticity in a dopaminergic circuit

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  DOI: 10.7554/eLife.102222
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11661795/
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TurboCas: A method for locus-specific labeling of genomic regions and isolating their associated protein interactome

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Mitoregulin self-associates to form likely homo-oligomeric pore-like complexes

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  DOI: 10.1016/j.isci.2024.111554
  
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Intron retention of an adhesion GPCR generates 1TM isoforms required for 7TM-GPCR function

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  DOI: 10.1016/j.celrep.2024.115078
  
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sciencedirect.com/science/article/pii/S2211124724014293
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Proximity proteomic analysis of the NRF family reveals the Parkinson's disease protein ZNF746/PARIS as a co-complexed repressor of NRF2

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  DOI: 10.1126/scisignal.adi9018
  
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pmc.ncbi.nlm.nih.gov/articles/PMC10760916/
Nov 2024
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Impairment of the glial phagolysosomal system drives prion-like propagation in a Drosophila model of Huntington's disease

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  DOI: 10.1523/JNEUROSCI.1256-23.2024
  
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EDC-3 and EDC-4 regulate embryonic mRNA clearance and biomolecular condensate specialization

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The small MAF transcription factor MAFG co-opts MITF to promote melanoma progression

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Distinct tumor architectures and microenvironments for the initiation of breast cancer metastasis in the brain

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Multiple direct and indirect roles of the Paf1 complex in transcription elongation, splicing, and histone modifications

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Aldehydes alter TGF-β signaling and induce obesity and cancer

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Disorder-mediated interactions target proteins to specific condensates

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Opposing GPCR signaling programs protein intake setpoint in Drosophila

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Disruption of nuclear speckle integrity dysregulates RNA splicing in C9ORF72-FTD/ALS

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TFE3 fusions direct an oncogenic transcriptional program that drives OXPHOS and unveils vulnerabilities in translocation renal cell carcinoma

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Architecture of native kinetochores revealed by structural studies utilizing a thermophilic yeast

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FEBS Press

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Presynaptic Rac1 in the hippocampus selectively regulates working memory

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Swi/Snf chromatin remodeling regulates transcriptional interference and gene repression

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Gap-junction-mediated bioelectric signaling required for slow muscle development and function in zebrafish

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Leveraging a self-cleaving peptide for tailored control in proximity labeling proteomics

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Synaptic plasticity in human thalamocortical assembloids

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Astrocytes modulate brain phosphate homeostasis via polarized distribution of phosphate uptake transporter PiT2 and exporter XPR1

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Molecular and cellular mechanisms of teneurin signaling in synaptic partner matching

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Casein kinase 1 family proteins promote Slimb-dependent Expanded degradation

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TRABD modulates mitochondrial homeostasis and tissue integrity

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Axonal endoplasmic reticulum tubules control local translation via P180/RRBP1-mediated ribosome interactions

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Non-apoptotic caspase events and Atf3 expression underlie direct neuronal differentiation of adult neural stem cells

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eEF1A2 promotes PTEN-GSK3β-SCF complex-dependent degradation of Aurora kinase A and is inactivated in breast cancer

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Spatiotemporal proteomics reveals the biosynthetic lysosomal membrane protein interactome in neurons

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A conserved site on Ndc80 complex facilitates dynamic recruitment of Mps1 to yeast kinetochores to promote accurate chromosome segregation

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Arginine deprivation enriches lung cancer proteomes with cysteine by inducing arginine-to-cysteine substitutants

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The deubiquitylating enzyme Fat Facets modulates Fat signalling and regulates tissue growth

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PDZD8 promotes autophagy at ER-Lysosome contact sites to regulate synaptogenesis

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Activity-driven synaptic translocation of LGI1 controls excitatory neurotransmission

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Unilateral rNurr1-V5 transgene expression in nigral dopaminergic neurons mitigates bilateral neuropathology and behavioral deficits in parkinsonian rats with α-synucleinopathy

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Numb positively regulates Hedgehog signaling at the ciliary pocket

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JNEUROSCI.1256-23.2024.full-html.html

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Adipose triglyceride lipase is a therapeutic target in advanced prostate cancer that promotes metabolic plasticity

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Trafficking of Connexin36 (Cx36) in the early secretory pathway

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Innexin hemichannel activation by Microplitis bicoloratus ecSOD monopolymer reduces ROS

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ISG12a promotes immunotherapy of HBV-associated hepatocellular carcinoma through blocking TRIM21/AKT/β-Catenin/PD-L1 axis

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Local mitochondrial replication in the periphery of neurons requires the eEF1A1 protein and thetranslation of nuclear-encoded proteins

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FLEX: genetically encodable enzymatic fluorescence signal amplification using engineered peroxidase

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Control of meiotic entry by dual inhibition of a key mitotic transcription factor

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Rie1 and Sgn1 form an RNA-binding complex that enforces the meiotic entry cell fate decision

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can-23-0555-html.html

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Complex formation of immunoglobulin superfamily molecules Side-IV and Beat-IIb regulates synaptic specificity

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A fluorescence-based protocol to quantitatively titrate CUT&RUN buffer components

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The GATOR2 complex maintains lysosomal-autophagic function by inhibiting the protein degradation of MiT/TFEs

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Recruitment of BAG2 to DNAJ-PKAc scaffolds promotes cell survival and resistance to drug-induced apoptosis in fibrolamellar carcinoma

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Proximity proteomic analysis of the NRF family reveals the Parkinson’s disease protein ZNF746/PARIS as a co-complexed repressor of NRF2

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PAPAS promotes differentiation of mammary epithelial cells and suppresses breast carcinogenesis

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Oligodendrocyte-derived LGI3 and its receptor ADAM23 organize juxtaparanodal Kv1 channel clustering for short-term synaptic plasticity

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Cytoneme signaling provides essential contributions to mammalian tissue patterning

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Wildtype C-Raf gene dosage and dimerization drive prostate cancer metastasis

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Single-molecule quantitation of RNA-binding protein occupancy and stoichiometry defines a role for Yra1 (Aly/REF) in nuclear mRNP organization

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tRNA modification enzyme-dependent redox homeostasis regulates synapse formation and memory

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Mass isolation of staged Drosophila pupal intestines for analysis of protein ubiquitylation

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Hepatic palmitoyl-proteomes and acyl-protein thioesterase protein proximity networks link lipid modification and mitochondria

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Repression of CENP-A assembly in metaphase requires HJURP phosphorylation and inhibition by M18BP1

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Hybridization led to a rewired pluripotency network in the allotetraploid Xenopus laevis

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Impairment of the glial phagolysosomal system drives prion-like propagation in a Drosophila model of Huntington’s disease

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The transcriptional regulator Ume6 is a major driver of early gene expression during gametogenesis

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The heat shock protein Hsp27 controls mitochondrial function by modulating ceramide generation

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Intralumenal docking of Connexin 36 channels in the ER isolates mis-trafficked protein

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Expanded tRNA methyltransferase family member TRMT9B regulates synaptic growth and function

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Systematic profiling of dominant ubiquitin variants reveals key functional nodes contributing to evolutionary selection

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PINK1, Keap1, and Rtnl1 regulate selective clearance of endoplasmic reticulum during development

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Developing a peptide to disrupt cohesin head domain interactions

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FoxM1 coordinates cell division, protein synthesis, and mitochondrial activity in a subset of β cells during acute metabolic stress

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Poly(GR) interacts with key stress granule factors promoting its assembly into cytoplasmic inclusions

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Complexes of vertebrate TMC1/2 and CIB2/3 proteins form hair-cell mechanotransduction cation channels

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Different chromatin-scanning modes lead to targeting of compacted chromatin by pioneer factors FOXA1 and SOX2

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Histone H1.2 Dependent Translocation of Poly (ADP-ribose) Initiates Parthanatos

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Proximity-labeling chemoproteomics defines the subcellular cysteinome and inflammation-responsive mitochondrial redoxome

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Alternative splicing and heparan sulfation converge on neurexin-1 to control glutamatergic transmission and autism-related behaviors

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Dynamic mapping of proteome trafficking within and between living cells by TransitID

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J of Bone Mineral Res - 2023 - Allen - Reduced GS domain serine threonine requirements of Fibrodysplasia Ossificans-html.html

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Effects of heterologous human tau protein expression in yeast models of proteotoxic stress response

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Extension of the DNAJB2a isoform in a dominant neuromyopathy family

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Neurobeachin controls the asymmetric subcellular distribution of electrical synapse proteins

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PASK links cellular energy metabolism with a mitotic self-renewal network to establish differentiation competence

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Organism-wide, cell-type-specific secretome mapping of exercise training in mice

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Dynamic epistasis analysis reveals how chromatin remodeling regulates transcriptional bursting

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The Transcriptional Regulator Ume6 is a Major Driver of Early Gene Expression during Gametogenesis

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Fructose-1,6-bisphosphatase is a nonenzymatic safety valve that curtails AKT activation to prevent insulin hyperresponsiveness

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Boosting BDNF in muscle rescues impaired in vivo axonal transport in a mouse model of DI-CMTC peripheral neuropathy

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Mar 2023
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The Ubiquitin-specific Protease USP36 Associates with the Microprocessor Complex and Regulates miRNA Biogenesis by SUMOylating DGCR8

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Interaction between PI3K and the VDAC2 channel tethers Ras-PI3K-positive endosomes to mitochondria and promotes endosome maturation

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The conserved histone chaperone Spt6 is strongly required for DNA replication and genome stability

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Molecular sensing of mechano- and ligand-dependent adhesion GPCR dissociation

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PIMT regulates Hepatic Gluconeogenesis in Mice

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Loss of C9orf72 perturbs the Ran-GTPase gradient and nucleocytoplasmic transport, generating compositionally diverse Importin β-1 granules

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Plasmodium sporozoites require the protein B9 to invade hepatocytes

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DDR2 coordinates EMT and metabolic reprogramming as a shared effector of FOXQ1 and SNAI1

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A circadian clock translational control mechanism targets specific mRNAs to cytoplasmic messenger ribonucleoprotein granules

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A novel period mutation implicating nuclear export in temperature compensation of the Drosophila circadian clock

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Seasonal cues act through the circadian clock and pigment-dispersing factor to control EYES ABSENT and downstream physiological changes

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Cytosolic DNA sensing by cGAS/STING promotes TRPV2-mediated Ca2+ release to protect stressed replication forks

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Primary cilia are WNT-transducing organelles whose biogenesis is controlled by a WNT-PP1 axis

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Intron retention of an adhesion GPCR generates single transmembrane-helix isoforms to enable 7TM-adhesion GPCR function

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Proximity biotinylation to define the local environment of the protein kinase A catalytic subunit in adrenal cells

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Monoallelic CRMP1 gene variants cause neurodevelopmental disorder

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Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization

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Elucidation of ubiquitin-conjugating enzymes that interact with RBR-type ubiquitin ligases using a liquid-liquid phase separation-based method

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Bidirectional promoter activity from expression cassettes can drive off-target repression of neighboring gene translation

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An ER phospholipid hydrolase drives ER-associated mitochondrial constriction for fission and fusion

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Mechanisms governing target search and binding dynamics of hypoxia-inducible factors

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TEMPO enables sequential genetic labeling and manipulation of vertebrate cell lineages

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LUBAC assembles a ubiquitin signaling platform at mitochondria for signal amplification and transport of NF-κB to the nucleus

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A novel function for the sperm adhesion protein IZUMO1 in cell–cell fusion

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DDR2 Coordinates EMT and Metabolic Reprogramming as a Shared Effector of FOXQ1 and SNAI1

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Regulation of mitophagy by the NSL complex underlies genetic risk for Parkinson’s disease at 16q11.2 and MAPT H1 loci

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ER-mitochondrial contact protein Miga regulates autophagy through Atg14 and Uvrag

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Multiphase coalescence mediates Hippo pathway activation

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Identification of proteomic landscape of drug-binding proteins in live cells by proximity-dependent target ID

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Allelic variation in the Arabidopsis TNL CHS3/CSA1 immune receptor pair reveals two functional cell-death regulatory modes

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In situ cell-type-specific cell-surface proteomic profiling in mice

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Yeast Mediator facilitates transcription initiation at most promoters via a Tail-independent mechanism

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ER-Golgi-localized proteins TMED2 and TMED10 control the formation of plasma membrane lipid nanodomains

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In vivo characterization of Drosophila golgins reveals redundancy and plasticity of vesicle capture at the Golgi apparatus

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Distinct silencer states generate epigenetic states of heterochromatin

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The redox cycling of STAT2 maintains innate immune homeostasis

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Duplex Labeling and Manipulation of Neuronal Proteins Using Sequential CRISPR/Cas9 Gene Editing

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Monoallelic CRMP1 gene variants cause neurodevelopmental disorder

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Direct Observation of Compartment-Specific Localization and Dynamics of Voltage-Gated Sodium Channels

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Mislocalization of protein kinase A drives pathology in Cushing’s syndrome

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Ubiquitination and deubiquitination of 4E-T regulate neural progenitor cell maintenance and neurogenesis by controlling P-body formation

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The SARS-CoV-2 protein NSP2 impairs the silencing capacity of the human 4EHP-GIGYF2 complex

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Identification of the stress granule transcriptome via RNA-editing in single cells and in vivo

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Development of an HIV reporter virus that identifies latently infected CD4+ T cells

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A TET1-PSPC1-Neat1 molecular axis modulates PRC2 functions in controlling stem cell bivalency

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A versatile viral toolkit for functional discovery in the nervous system

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ARAF protein kinase activates RAS by antagonizing its binding to RASGAP NF1

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Transcription factor Acj6 controls dendrite targeting via a combinatorial cell-surface code

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The non-adrenergic imidazoline-1 receptor protein Nischarin is a key regulator of astrocyte glutamate uptake

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Single-cell profiling of transcriptome and histone modifications with EpiDamID

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Melanomas with concurrent BRAF non-p.V600 and NF1 loss-of-function mutations are targetable by BRAF/MEK inhibitor combination therapy

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The FUS::DDIT3 fusion oncoprotein inhibits BAF complex targeting and activity in myxoid liposarcoma

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ALS-associated KIF5A mutations abolish autoinhibition resulting in a toxic gain of function

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PTIP governs NAD+ metabolism by regulating CD38 expression to drive macrophage inflammation

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Spatial CRISPR genomics identifies regulators of the tumor microenvironment

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The BTB transcription factors ZBTB11 and ZFP131 maintain pluripotency by repressing pro-differentiation genes

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PCR-based profiling of transcription factor activity in vivo by a virus-based reporter battery

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Subcellular proteomics of dopamine neurons in the mouse brain

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Identification of 14-3-3 proteins, Polo kinase, and RNA-binding protein Pes4 as key regulators of meiotic commitment in budding yeast

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Prickle isoform participation in distinct polarization events in the Drosophila eye

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Paternal transmission of the Wolbachia CidB toxin underlies cytoplasmic incompatibility

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Overexpression screen of interferon-stimulated genes identifies RARRES3 as a restrictor of Toxoplasma gondii infection

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CD95/Fas suppresses NF-κB activation through recruitment of KPC2 in a CD95L/FasL-independent mechanism

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The Lyme disease agent co-opts adiponectin receptor-mediated signaling in its arthropod vector

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Drosophila ßHeavy-Spectrin is required in polarized ensheathing glia that form a diffusion-barrier around the neuropil

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Programmed cortical ER collapse drives selective ER degradation and inheritance in yeast meiosis

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Klf5 establishes bi-potential cell fate by dual regulation of ICM and TE specification genes

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Interplay between protein acetylation and ubiquitination controls MCL1 protein stability

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AKIRIN2 controls the nuclear import of proteasomes in vertebrates

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An expansion of the non-coding genome and its regulatory potential underlies vertebrate neuronal diversity

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Increased ACTL6A occupancy within mSWI/SNF chromatin remodelers drives human squamous cell carcinoma

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Temporally distinct post-replicative repair mechanisms fill PRIMPOL-dependent ssDNA gaps in human cells

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Analysis of meiosis in Pristionchus pacificus reveals plasticity in homolog pairing and synapsis in the nematode lineage

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Oncogene-dependent sloppiness in mRNA translation

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An engineered transcriptional reporter of protein localization identifies regulators of mitochondrial and ER membrane protein trafficking in high-throughput CRISPRi screens

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