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Aug 2025
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LINE-1 retrotransposons mediate cis-acting transcriptional control in human pluripotent stem cells and regulate early brain development

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1. scibot 26 Aug 2025
  
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  DOI: 10.1016/j.xgen.2025.100979
  
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sciencedirect.com/science/article/pii/S2666979X25002356
Jul 2025
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Histone marks enable formation of immiscible phase-separated chromatin compartments

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  DOI: 10.1016/j.celrep.2025.116003
  
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sciencedirect.com/science/article/pii/S2211124725007740
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Generation of germinal-vesicle oocytes from mouse embryonic stem cells under an ovarian soma-free condition

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  DOI: 10.1016/j.devcel.2025.06.008
  
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sciencedirect.com/science/article/pii/S1534580725003636
Jun 2025
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Bivalent chromatin instructs lineage specification during hematopoiesis

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  DOI: 10.1016/j.cell.2025.05.011
  
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sciencedirect.com/science/article/pii/S0092867425005616
May 2025
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Spatially resolved genome-wide joint profiling of epigenome and transcriptome with spatial-ATAC-RNA-seq and spatial-CUT&Tag-RNA-seq

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1. scibot 19 May 2025
  
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  DOI: 10.1038/s41596-025-01145-9
  
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nature.com/articles/s41596-025-01145-9
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Super RNA Pol II domains enhance minor ZGA through 3D interaction to ensure the integrity of major transcriptional waves in late-ZGA mammals

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  DOI: 10.1016/j.xgen.2025.100856
  
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sciencedirect.com/science/article/pii/S2666979X25001120
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U1 snRNP regulates alternative promoter activity by inhibiting premature polyadenylation

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1. scibot 18 May 2025
  
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  DOI: 10.1016/j.molcel.2025.04.021
  
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sciencedirect.com/science/article/pii/S1097276525003636
Dec 2024
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Frizzled5 controls murine intestinal epithelial cell plasticity through organization of chromatin accessibility

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1. scibot 06 Dec 2024
  
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  DOI: 10.1016/j.devcel.2024.10.021
  
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sciencedirect.com/science/article/pii/S1534580724006610
Jul 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The histone demethylase KDM5 is required for synaptic structure and function at the Drosophila neuromuscular junction

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1. scibot 25 Jul 2024
  
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  DOI: 10.1016/j.celrep.2021.108753
  
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ncbi.nlm.nih.gov/pmc/articles/PMC7945993/
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The annotation of GBA1 has been concealed by its protein-coding pseudogene GBAP1

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1. scibot 23 Jul 2024
  
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  DOI: 10.1126/sciadv.adk1296
  
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science.org/doi/10.1126/sciadv.adk1296
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The annotation of GBA1 has been concealed by its protein-coding pseudogene GBAP1

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  DOI: 10.1126/sciadv.adk1296
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11204300/
Jun 2024
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Spatially resolved epigenome sequencing via Tn5 transposition and deterministic DNA barcoding in tissue

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1. scibot 30 Jun 2024
  
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  DOI: 10.1038/s41596-024-01013-y
  
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link.springer.com/article/10.1038/s41596-024-01013-y
May 2024
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MECP2 directly interacts with RNA polymerase II to modulate transcription in human neurons

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1. scibot 02 May 2024
  
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  DOI: 10.1016/j.neuron.2024.04.007
  
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sciencedirect.com/science/article/pii/S0896627324002459
Apr 2024
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SAFB restricts contact domain boundaries associated with L1 chimeric transcription

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1. scibot 11 Apr 2024
  
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  DOI: 10.1016/j.molcel.2024.03.021
  
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sciencedirect.com/science/article/pii/S1097276524002314
Mar 2024
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Nuclear microRNA-mediated transcriptional control determines adult microglial homeostasis and brain function

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  DOI: 10.1016/j.celrep.2024.113964
  
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sciencedirect.com/science/article/pii/S2211124724002924
Feb 2024
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EZH2 Inhibition Promotes Tumor Immunogenicity in Lung Squamous Cell Carcinomas

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1. scibot 15 Feb 2024
  
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  DOI: 10.1158/2767-9764.CRC-23-0399
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10863487/
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FOXA1 forms biomolecular condensates that unpack condensed chromatin to function as a pioneer factor

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1. scibot 09 Feb 2024
  
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  DOI: 10.1016/j.molcel.2023.11.020
  
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sciencedirect.com/science/article/abs/pii/S1097276523009656
Jan 2024
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PCGF6 controls murine Tuft cell differentiation via H3K9me2 modification independently of Polycomb repression

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1. scibot 19 Jan 2024
  
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  DOI: 10.1016/j.devcel.2023.12.015
  
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sciencedirect.com/science/article/pii/S1534580723006962
Nov 2023
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Scalable single-cell profiling of chromatin modifications with sciCUT&Tag

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1. scibot 17 Nov 2023
  
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  DOI: 10.1038/s41596-023-00905-9
  
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nature.com/articles/s41596-023-00905-9
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LINE-1 retrotransposons drive human neuronal transcriptome complexity and functional diversification

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1. scibot 17 Nov 2023
  
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  DOI: 10.1126/sciadv.adh9543
  
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science.org/doi/10.1126/sciadv.adh9543
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LINE-1 retrotransposons drive human neuronal transcriptome complexity and functional diversification

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  DOI: 10.1126/sciadv.adh9543
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10619931/
Oct 2023
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Gcn5- and Bre1-mediated Set2 degradation promotes chronological aging of Saccharomyces cerevisiae

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  DOI: 10.1016/j.celrep.2023.113186
  
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sciencedirect.com/science/article/pii/S2211124723011981
www.embopress.org www.embopress.org

Hypoxia activates SREBP2 through Golgi disassembly in bone marrow-derived monocytes for enhanced tumor growth

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1. scibot 03 Oct 2023
  
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  DOI: 10.15252/embj.2023114032
  
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embopress.org/doi/10.15252/embj.2023114032
Sep 2023
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Histone bivalency regulates the timing of cerebellar granule cell development

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1. scibot 17 Sep 2023
  
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  DOI: 10.1101/gad.350594.123
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10499015/
Jun 2023
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Pyruvate metabolism controls chromatin remodeling during CD4+ T cell activation

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  DOI: 10.1016/j.celrep.2023.112583
  
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sciencedirect.com/science/article/pii/S2211124723005946
May 2023
www.biorxiv.org www.biorxiv.org

L1 retrotransposons drive human neuronal transcriptome complexity and functional diversification

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1. scibot 04 May 2023
  
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  DOI: 10.1101/2023.03.04.531072
  
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biorxiv.org/content/10.1101/2023.03.04.531072v1
Apr 2023
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Evolutionarily distinct and sperm-specific supersized chromatin loops are marked by Helitron transposons in Xenopus tropicalis

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  DOI: 10.1016/j.celrep.2023.112151
  
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Transient suppression of SUMOylation in embryonic stem cells generates embryo-like structures

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  DOI: 10.1016/j.celrep.2023.112380
  
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Targeting the mevalonate pathway suppresses ARID1A-inactivated cancers by promoting pyroptosis

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  DOI: 10.1016/j.ccell.2023.03.002
  
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sciencedirect.com/science/article/pii/S1535610823000508
Mar 2023
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KDM6A Loss Triggers an Epigenetic Switch That Disrupts Urothelial Differentiation and Drives Cell Proliferation in Bladder Cancer

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1. scibot 18 Mar 2023
  
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  DOI: 10.1158/0008-5472.CAN-22-1444
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10015223/
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Histone bivalency regulates the timing of cerebellar granule cell development

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  DOI: 10.1101/2023.02.02.526881
  
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biorxiv.org/content/10.1101/2023.02.02.526881v1
Feb 2023
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Bat pluripotent stem cells reveal unusual entanglement between host and viruses

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  DOI: 10.1016/j.cell.2023.01.011
  
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sciencedirect.com/science/article/pii/S0092867423000417
Jan 2023
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Multi-omics profiling visualizes dynamics of cardiac development and functions

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  DOI: 10.1016/j.celrep.2022.111891
  
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sciencedirect.com/science/article/pii/S2211124722017909
Dec 2022
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SETD1A regulates transcriptional pause release of heme biosynthesis genes in leukemia

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  DOI: 10.1016/j.celrep.2022.111727
  
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sciencedirect.com/science/article/pii/S2211124722016059
Nov 2022
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Tip60-mediated H2A.Z acetylation promotes neuronal fate specification and bivalent gene activation

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1. scibot 24 Nov 2022
  
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  DOI: 10.1016/j.molcel.2022.11.002
  
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sciencedirect.com/science/article/abs/pii/S1097276522010644
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Metabolic regulation by p53 prevents R-loop-associated genomic instability

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  DOI: 10.1016/j.celrep.2022.111568
  
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The BTB transcription factors ZBTB11 and ZFP131 maintain pluripotency by repressing pro-differentiation genes

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Transcription factor Hhex negatively regulates osteoclast differentiation by controlling cyclin-dependent kinase inhibitors

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Activation-induced chromatin reorganization in neurons depends on HDAC1 activity

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5-Hydroxymethylcytosine-mediated active demethylation is required for mammalian neuronal differentiation and function

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Cell division- and DNA replication-free reprogramming of somatic nuclei for embryonic transcription

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Increased ACTL6A occupancy within mSWI/SNF chromatin remodelers drives human squamous cell carcinoma

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A cis-acting structural variation at the ZNF558 locus controls a gene regulatory network in human brain development

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HBO1-MLL interaction promotes AF4/ENL/P-TEFb-mediated leukemogenesis

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KDM5A suppresses PML-RARα target gene expression and APL differentiation through repressing H3K4me2

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Enhancer decommissioning imposes an epigenetic barrier to sensory hair cell regeneration

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Untitled document

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SIRT1 regulates sphingolipid metabolism and neural differentiation of mouse embryonic stem cells through c-Myc-SMPDL3B

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Chromatin accessibility governs the differential response of cancer and T cells to arginine starvation

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m6A Modification Prevents Formation of Endogenous Double-Stranded RNAs and Deleterious Innate Immune Responses during Hematopoietic Development

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Stromal SOX2 Upregulation Promotes Tumorigenesis through the Generation of a SFRP1/2-Expressing Cancer-Associated Fibroblast Population

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Integrated Metabolic and Epigenomic Reprograming by H3K27M Mutations in Diffuse Intrinsic Pontine Gliomas

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H3.3-K27M drives neural stem cell-specific gliomagenesis in a human iPSC-derived model

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The histone demethylase KDM5 is required for synaptic structure and function at the Drosophila neuromuscular junction

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Activation of CpG-Rich Promoters Mediated by MLL Drives MOZ-Rearranged Leukemia

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Large domains of heterochromatin direct the formation of short mitotic chromosome loops

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Loss of Extreme Long-Range Enhancers in Human Neural Crest Drives a Craniofacial Disorder

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Systematic perturbation of retroviral LTRs reveals widespread long-range effects on human gene regulation

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ZBTB1 Regulates Asparagine Synthesis and Leukemia Cell Response to L-Asparaginase

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HUMAN TROPHOBLAST DIFFERENTIATION IS ASSOCIATED WITH PROFOUND GENE REGULATORY AND EPIGENETIC CHANGES

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DNA Hypermethylation Encroachment at CpG Island Borders in Cancer Is Predisposed by H3K4 Monomethylation Patterns

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Inhibiting Inflammation with Myeloid Cell-Specific Nanobiologics Promotes Organ Transplant Acceptance

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Untitled document

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Untitled document

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Cooperation of PU.1 With IRF8 and NFATc1 Defines Chromatin Landscapes During RANKL‐Induced Osteoclastogenesis

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Untitled document

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Examining the Roles of H3K4 Methylation States with Systematically Characterized Antibodies

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Increased Lactate Secretion by Cancer Cells Sustains Non-cell-autonomous Adaptive Resistance to MET and EGFR Targeted Therapies

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Identification of Therapeutic Targets in Rhabdomyosarcoma through Integrated Genomic, Epigenomic, and Proteomic Analyses

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Promoter of lncRNA Gene PVT1 Is a Tumor-Suppressor DNA Boundary Element

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Aging Triggers Cytoplasmic Depletion and Nuclear Translocation of the E3 Ligase Mahogunin: A Function for Ubiquitin in Neuronal Survival

1
1. scibot 08 Nov 2017
  
  in Public
  
  AB_2615077
  
  Curator: @chewbeccax
  
  Resource used:
  
  (Active Motif Cat# 39159, RRID:AB_2615077)
  
  SciCrunch record: RRID:AB_2615077
  
  Alternate resolvers: SciCrunch xml N2T identifiers.org
  
  What is this?
  
  RRID:AB_2615077 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:AB_2615077

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scibot

URL

sciencedirect.com/science/article/pii/S1097276517302356
www.sciencedirect.com www.sciencedirect.com

Mll3 and Mll4 Facilitate Enhancer RNA Synthesis and Transcription from Promoters Independently of H3K4 Monomethylation

1
1. scibot 08 Nov 2017
  
  in Public
  
  AB_2615077
  
  Curator: @ifroman
  
  Resource used:
  
  (Active Motif Cat# 39159, RRID:AB_2615077)
  
  SciCrunch record: RRID:AB_2615077
  
  Alternate resolvers: SciCrunch xml N2T identifiers.org
  
  What is this?
  
  RRID:AB_2615077 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:AB_2615077

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scibot

URL

sciencedirect.com/science/article/pii/S1097276517302745
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Ciliary transcription factors and miRNAs precisely regulate Cp110 levels required for ciliary adhesions and ciliogenesis

1
1. scibot 08 Nov 2017
  
  in Public
  
  H3K4me3
  
  Curator: @chewbeccax
  
  Resource used:
  
  (Active Motif Cat# 39159, RRID:AB_2615077)
  
  SciCrunch record: RRID:AB_2615077
  
  Alternate resolvers: SciCrunch xml N2T identifiers.org
  
  What is this?
  
  RRID:AB_2615077 RRIDCUR:Missing
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RRIDCUR:Missing

RRID:AB_2615077

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scibot

URL

ncbi.nlm.nih.gov/pmc/articles/PMC5045295/
www.sciencedirect.com www.sciencedirect.com

A Multi-step Transcriptional and Chromatin State Cascade Underlies Motor Neuron Programming from Embryonic Stem Cells

1
1. scibot 08 Nov 2017
  
  in Public
  
  AB_2615077
  
  Curator: @gabimpine
  
  Resource used:
  
  (Active Motif Cat# 39159, RRID:AB_2615077)
  
  SciCrunch record: RRID:AB_2615077
  
  Alternate resolvers: SciCrunch xml N2T identifiers.org
  
  What is this?
  
  RRID:AB_2615077 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:AB_2615077

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scibot

URL

sciencedirect.com/science/article/pii/S1934590916304027
www.sciencedirect.com www.sciencedirect.com

Inheritable Silencing of Endogenous Genes by Hit-and-Run Targeted Epigenetic Editing

1
1. scibot 08 Nov 2017
  
  in Public
  
  AB_2615077
  
  Curator: @gabimpine
  
  Resource used:
  
  (Active Motif Cat# 39159, RRID:AB_2615077)
  
  SciCrunch record: RRID:AB_2615077
  
  Alternate resolvers: SciCrunch xml N2T identifiers.org
  
  What is this?
  
  RRID:AB_2615077 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:AB_2615077

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scibot

URL

sciencedirect.com/science/article/pii/S0092867416312363

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