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A multi-omics analysis of advanced triple-negative breast cancer identifies predictors to chemo-immunotherapy and on-treatment dynamics

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  DOI: 10.1016/j.xcrm.2026.103080
  
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sciencedirect.com/science/article/pii/S2666379126004970
Mar 2026
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Immune-microbiome coordination defines interferon setpoints in healthy humans

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  DOI: 10.1016/j.cell.2026.02.003
  
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sciencedirect.com/science/article/pii/S0092867426001686
Oct 2025
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Multi-modal image analysis for large-scale cancer tissue studies within IMMUcan

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1. scibot 23 Oct 2025
  
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  DOI: 10.1016/j.crmeth.2025.101170
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12539258/
Jun 2025
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STAMP: Single-cell transcriptomics analysis and multimodal profiling through imaging

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1. scibot 18 Jun 2025
  
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  DOI: 10.1016/j.cell.2025.05.027
  
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1-s2.0-S2589004225009769-main-html.html

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1. scibot 11 Jun 2025
  
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52.53.155.43/cc707e459b029b000ac6efbce15180cbbd7d6f19/PDF-html.html
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Statistical modeling and analysis of cell counts from multiplexed imaging data

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1. scibot 11 Jun 2025
  
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  DOI: 10.1016/j.cels.2025.101296
  
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cell.com/cell-systems/abstract/S2405-4712(25)00129-2
May 2025
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Minimally invasive diagnosis of precancerous cervical lesions using single-cell peripheral immune atlas

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1. scibot 29 May 2025
  
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sciencedirect.com/science/article/pii/S2666379125002228
Jan 2025
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JAK inhibition decreases the autoimmune burden in Down syndrome

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1. scibot 04 Jan 2025
  
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  DOI: 10.7554/eLife.99323
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11687933/
Oct 2024
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Sex-biased human thymic architecture guides T cell development through spatially defined niches

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1. scibot 09 Oct 2024
  
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  DOI: 10.1016/j.devcel.2024.09.011
  
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sciencedirect.com/science/article/pii/S1534580724005392
May 2024
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Mapping the cellular biogeography of human bone marrow niches using single-cell transcriptomics and proteomic imaging

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  DOI: 10.1016/j.cell.2024.04.013
  
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sciencedirect.com/science/article/pii/S0092867424004082
Apr 2024
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Multi-omic profiling reveals the endogenous and neoplastic responses to immunotherapies in cutaneous T cell lymphoma

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1. scibot 30 Apr 2024
  
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  DOI: 10.1016/j.xcrm.2024.101527
  
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2. scibot 30 Apr 2024
  
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  DOI: 10.1016/j.xcrm.2024.101527
  
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sciencedirect.com/science/article/pii/S2666379124001964
Mar 2024
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Circulation immune cell landscape in canonical pathogenesis of colorectal adenocarcinoma by CyTOF analysis

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1. scibot 10 Mar 2024
  
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  DOI: 10.1016/j.isci.2024.109229
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10918214/
Feb 2024
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Merkel cell polyomavirus-specific and CD39+CLA+ CD8 T cells as blood-based predictive biomarkers for PD-1 blockade in Merkel cell carcinoma

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1. scibot 14 Feb 2024
  
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  DOI: 10.1016/j.xcrm.2023.101390
  
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sciencedirect.com/science/article/pii/S2666379123006195
Jan 2024
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Cancer-associated fibroblast phenotypes are associated with patient outcome in non-small cell lung cancer

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1. scibot 19 Jan 2024
  
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  DOI: 10.1016/j.ccell.2023.12.021
  
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sciencedirect.com/science/article/pii/S153561082300449X
Dec 2023
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The Tumor Immune Microenvironment Architecture Correlates with Risk of Recurrence in Head and Neck Squamous Cell Carcinoma

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1. scibot 06 Dec 2023
  
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  DOI: 10.1158/0008-5472.CAN-23-0379
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10690086/
Oct 2023
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In-depth analysis of human virus-specific CD8+ T cells delineates unique phenotypic signatures for T cell specificity prediction

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1. scibot 17 Oct 2023
  
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  DOI: 10.1016/j.celrep.2023.113250
  
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sciencedirect.com/science/article/pii/S2211124723012627
Sep 2023
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Systemic immune profiling of Omicron-infected subjects inoculated with different doses of inactivated virus vaccine

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1. scibot 30 Sep 2023
  
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  DOI: 10.1016/j.cell.2023.08.033
  
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sciencedirect.com/science/article/pii/S0092867423009649
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Highly multiplexed spatial analysis identifies tissue-resident memory T cells as drivers of ulcerative and immune checkpoint inhibitor induced colitis

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1. scibot 29 Sep 2023
  
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  DOI: 10.1016/j.isci.2023.107891
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10520880/
Aug 2023
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PIIS2666379123003026-html.html

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1. scibot 19 Aug 2023
  
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  DOI: 10.5281/zenodo.8140861
  
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52.53.155.43/44a69a0676f3928bc2507a6d1cfc08f399e25ade/PIIS2666379123003026-html.html
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mRNA vaccination boosts S-specific T cell memory and promotes expansion of CD45RAint TEMRA-like CD8+ T cells in COVID-19 recovered individuals

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1. scibot 12 Aug 2023
  
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52.53.155.43/1d749e9bf9b52555f229203df4889984f1025558/PIIS2666379123003026-html.html
May 2023
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Integrated plasma proteomic and single-cell immune signaling network signatures demarcate mild, moderate, and severe COVID-19

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sciencedirect.com/science/article/pii/S2666379122002166
Feb 2023
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Human IRF1 governs macrophagic IFN-γ immunity to mycobacteria

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  DOI: 10.1016/j.cell.2022.12.038
  
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sciencedirect.com/science/article/pii/S0092867422015811
Jan 2023
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Opioid-induced fragile-like regulatory T cells contribute to withdrawal

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1. scibot 21 Jan 2023
  
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  DOI: 10.1016/j.cell.2022.12.030
  
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sciencedirect.com/science/article/pii/S0092867422015732
Nov 2022
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The transcription factor IRF2 drives interferon-mediated CD8+ T cell exhaustion to restrict anti-tumor immunity

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1. scibot 15 Nov 2022
  
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  DOI: 10.1016/j.immuni.2022.10.020
  
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sciencedirect.com/science/article/pii/S1074761322005611
Aug 2022
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https://medrxiv.org/cgi/content/10.1101/2021.05.11.21256877

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52.53.155.43/adc175c57d72a20de004e8b016eb3f647cbcbf2f/2021.05.11.21256877.full-html.html
May 2022
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A cytotoxic-skewed immune set point predicts low neutralizing antibody levels after Zika virus infection

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  DOI: 10.1016/j.celrep.2022.110815
  
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sciencedirect.com/science/article/pii/S2211124722005861
Apr 2022
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Integrating transcription-factor abundance with chromatin accessibility in human erythroid lineage commitment

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  DOI: 10.1016/j.crmeth.2022.100188
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9017139/
Mar 2022
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Tissue-resident FOLR2+ macrophages associate with CD8+ T cell infiltration in human breast cancer

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A blood atlas of COVID-19 defines hallmarks of disease severity and specificity

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  DOI: 10.1016/j.cell.2022.01.012
  
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sciencedirect.com/science/article/pii/S0092867422000708
Nov 2021
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Single-cell analysis of human non-small cell lung cancer lesions refines tumor classification and patient stratification

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  DOI: 10.1016/j.ccell.2021.10.009
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8728963/
Oct 2021
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Alignment of single-cell trajectories by tuMap enables high-resolution quantitative comparison of cancer samples

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  DOI: 10.1016/j.cels.2021.09.003
  
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sciencedirect.com/science/article/pii/S2405471221003409
Aug 2021
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Human TBK1 deficiency leads to autoinflammation driven by TNF-induced cell death

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1. scibot 15 Aug 2021
  
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  DOI: 10.1016/j.cell.2021.07.026
  
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sciencedirect.com/science/article/pii/S0092867421008850
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The COVIDome Explorer researcher portal

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  DOI: 10.1016/j.celrep.2021.109527
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8316015/
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Untitled document

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  DOI: 10.1016/j.cell.2017.04.014
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5737939/
Jul 2021
www.cell.com www.cell.com

Gut-microbiota-targeted diets modulate human immune status

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1. scibot 13 Jul 2021
  
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  DOI: 10.1016/j.cell.2021.06.019
  
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cell.com/cell/fulltext/S0092-8674(21)00754-6
Jun 2021
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Microbial exposure during early human development primes fetal immune cells

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1. scibot 02 Jun 2021
  
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  RRID:AB_314406
  
  DOI: 10.1016/j.cell.2021.04.039
  
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sciencedirect.com/science/article/pii/S0092867421005742
May 2021
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Comparative immune profiling of acute respiratory distress syndrome patients with or without SARS-CoV2 infection

1
1. scibot 27 May 2021
  
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  RRID:AB_314406
  
  DOI: 10.1016/j.xcrm.2021.100291
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8101789/
Apr 2021
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Human T-bet Governs Innate and Innate-like Adaptive IFN-γ Immunity against Mycobacteria

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1. scibot 24 Apr 2021
  
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  DOI: 10.1016/j.cell.2020.10.046
  
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Mar 2021
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Seroconversion stages COVID19 into distinct pathophysiological states

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1. scibot 20 Mar 2021
  
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  DOI: 10.7554/eLife.65508
  
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ncbi.nlm.nih.gov/pmc/articles/PMC7963480/
Feb 2021
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Identifying CNS-colonizing T cells as potential therapeutic targets to prevent progression of multiple sclerosis

1
1. scibot 24 Feb 2021
  
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  RRID:AB_314406
  
  DOI: 10.1016/j.medj.2021.01.006
  
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sciencedirect.com/science/article/pii/S2666634021000362
Sep 2020
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Complex Autoinflammatory Syndrome Unveils Fundamental Principles of JAK1 Kinase Transcriptional and Biochemical Function

1
1. scibot 26 Sep 2020
  
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  DOI: 10.1016/j.immuni.2020.07.006
  
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pmc.ncbi.nlm.nih.gov/articles/PMC7398039/
pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov

Chromatin Landscape Underpinning Human Dendritic Cell Heterogeneity

1
1. scibot 25 Sep 2020
  
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  RRID:AB_314406
  
  DOI: 10.1016/j.celrep.2020.108180
  
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pubmed.ncbi.nlm.nih.gov/32966789/
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Human Tumor-Infiltrating MAIT Cells Display Hallmarks of Bacterial Antigen Recognition in Colorectal Cancer

1
1. scibot 23 Sep 2020
  
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  RRID:AB_314406
  
  DOI: 10.1016/j.xcrm.2020.100039
  
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pubmed.ncbi.nlm.nih.gov/33205061/
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Comprehensive Immunoprofiling of Pediatric Zika Reveals Key Role for Monocytes in the Acute Phase and No Effect of Prior Dengue Virus Infection

1
1. scibot 11 Sep 2020
  
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  RRID:AB_314406
  
  DOI: 10.1016/j.celrep.2020.107569
  
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sciencedirect.com/science/article/pii/S2211124720305180
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Systemic Type I IFN Inflammation in Human ISG15 Deficiency Leads to Necrotizing Skin Lesions

1
1. scibot 08 Sep 2020
  
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  RRID:AB_314406
  
  DOI: 10.1016/j.celrep.2020.107633
  
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sciencedirect.com/science/article/pii/S2211124720305866
Jan 2020
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Mass Cytometry Reveals Global Immune Remodeling with Multi-lineage Hypersensitivity to Type I Interferon in Down Syndrome

1
1. scibot 13 Jan 2020
  
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  RRID:AB_314406
  
  DOI: 10.1016/j.celrep.2019.10.038
  
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sciencedirect.com/science/article/pii/S221112471931352X
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Single-Cell Analysis of Human Mononuclear Phagocytes Reveals Subset-Defining Markers and Identifies Circulating Inflammatory Dendritic Cells

1
1. scibot 13 Jan 2020
  
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  RRID:AB_314406
  
  DOI: 10.1016/j.immuni.2019.08.008
  
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Single-Cell Analysis of Crohn’s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy

1
1. scibot 13 Jan 2020
  
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  RRID:AB_314406
  
  DOI: 10.1016/j.cell.2019.08.008
  
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sciencedirect.com/science/article/pii/S0092867419308967
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Untitled document

1
1. scibot 13 Jan 2020
  
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  DOI: 10.1016/j.cmet.2018.11.014
  
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sciencedirect.com/science/article/pii/S1550413118306910
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Untitled document

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1. scibot 13 Jan 2020
  
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  RRID:AB_314406
  
  DOI: 10.1016/j.cell.2019.03.005
  
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sciencedirect.com/science/article/pii/S0092867419302673
Nov 2018
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Untitled document

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sciencedirect.com/science/article/pii/S1074761317304788
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Developmental Analysis of Bone Marrow Neutrophils Reveals Populations Specialized in Expansion, Trafficking, and Effector Functions

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1. scibot 05 Nov 2018
  
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sciencedirect.com/science/article/pii/S1074761318300384
Nov 2017
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Innate Immune Landscape in Early Lung Adenocarcinoma by Paired Single-Cell Analyses

1
1. scibot 08 Nov 2017
  
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  Curator: @kaitlinsung
  
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sciencedirect.com/science/article/pii/S0092867417304270