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Apr 2026
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PDS5 proteins control genome architecture by limiting the lifetime of cohesin-NIPBL complexes

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FOXF1/2 establish a senescence-specific enhancer landscape to activate the pro-inflammatory senescence-associated secretory phenotype

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Nov 2025
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Functional maps of a genomic locus reveal confinement of an enhancer by its target gene

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pmc.ncbi.nlm.nih.gov/articles/PMC7618358/
Sep 2025
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Control of myeloid lineage fidelity and response to stimuli by ISWI-enforced nucleosome phasing

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Aug 2025
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Single-stranded DNA-binding proteins are essential components of the architectural LDB1 protein complex

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Jul 2025
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β-catenin functions as a molecular adapter for disordered cBAF interactions

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Apr 2025
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The SWI/SNF PBAF complex facilitates REST occupancy at repressive chromatin

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Jan 2025
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LDB1 establishes multi-enhancer networks to regulate gene expression

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sciencedirect.com/science/article/pii/S1097276524009924
Dec 2024
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Putative looping factor ZNF143/ZFP143 is an essential transcriptional regulator with no looping function

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ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF

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A negatively-charged region within carboxy-terminal domain maintains proper CTCF DNA binding

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pmc.ncbi.nlm.nih.gov/articles/PMC11667065/
Aug 2024
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Members of an array of zinc-finger proteins specify distinct Hox chromatin boundaries

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sciencedirect.com/science/article/pii/S1097276524006610
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The CSB chromatin remodeler regulates PARP1- and PARP2-mediated single-strand break repair at actively transcribed DNA regions

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academic.oup.com/nar/article/51/14/7342/7199336
Jul 2024
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Cell-type-specific loops linked to RNA polymerase II elongation in human neural differentiation

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sciencedirect.com/science/article/pii/S2666979X24002003
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SETDB1 regulates short interspersed nuclear elements and chromatin loop organization in mouse neural precursor cells

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ncbi.nlm.nih.gov/pmc/articles/PMC11221086/
May 2024
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A CTCF-binding site in the Mdm1-Il22-Ifng locus shapes cytokine expression profiles and plays a critical role in early Th1 cell fate specification

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Apr 2024
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A rewiring of DNA replication mediated by MRE11 exonuclease underlies primed-to-naive cell de-differentiation

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Jan 2024
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PCGF6 controls murine Tuft cell differentiation via H3K9me2 modification independently of Polycomb repression

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Dec 2023
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Spatially coordinated heterochromatinization of long synaptic genes in fragile X syndrome

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sciencedirect.com/science/article/pii/S0092867423012734
Nov 2023
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Endonucleosis mediates internalization of cytoplasm into the nucleus in senescent cells

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  DOI: 10.1101/2023.11.12.566736
  
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biorxiv.org/content/10.1101/2023.11.12.566736v1
Jun 2023
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Quantitative control of Ets1 dosage by a multi-enhancer hub promotes Th1 cell differentiation and protects from allergic inflammation

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sciencedirect.com/science/article/pii/S1074761323002212
Apr 2023
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DNA architectural protein CTCF facilitates subset-specific chromatin interactions to limit the formation of memory CD8+ T cells

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Mar 2023
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HNRNPU facilitates antibody class-switch recombination through C-NHEJ promotion and R-loop suppression

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Feb 2023
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Low affinity CTCF binding drives transcriptional regulation whereas high affinity binding encompasses architectural functions

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Jan 2023
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Principles of 3D chromosome folding and evolutionary genome reshuffling in mammals

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Human SMARCA5 is continuously required to maintain nucleosome spacing

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  DOI: 10.1016/j.molcel.2022.12.018
  
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pmc.ncbi.nlm.nih.gov/articles/PMC9974918/
Nov 2022
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Essential role of MESP1-RING1A complex in cardiac differentiation

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FOXR2 is an epigenetically regulated pan-cancer oncogene that activates ETS transcriptional circuits

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  DOI: 10.1158/0008-5472.CAN-22-0671
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9437574/
Oct 2022
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Establishment of 3D chromatin structure after fertilization and the metabolic switch at the morula-to-blastocyst transition require CTCF

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Sep 2022
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CTCF DNA-binding domain undergoes dynamic and selective protein–protein interactions

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ncbi.nlm.nih.gov/pmc/articles/PMC9474293/
Jun 2022
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TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors

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  DOI: 10.1038/s41590-022-01232-z
  
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nature.com/articles/s41590-022-01232-z
May 2022
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Alcohol induced increases in sperm Histone H3 lysine 4 trimethylation correlate with increased placental CTCF occupancy and altered developmental programming

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  DOI: 10.1038/s41598-022-12188-3
  
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nature.com/articles/s41598-022-12188-3
Apr 2022
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Regulation of Il6 expression by single CpG methylation in downstream of Il6 transcription initiation site

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  DOI: 10.1016/j.isci.2022.104118
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8983349/
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Altered BAF occupancy and transcription factor dynamics in PBAF-deficient melanoma

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sciencedirect.com/science/article/pii/S2211124722003898
Feb 2022
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EBF1 nuclear repositioning instructs chromatin refolding to promote therapy resistance in T leukemic cells

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  DOI: 10.1016/j.molcel.2022.01.015
  
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sciencedirect.com/science/article/pii/S1097276522000582
Nov 2021
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An expansion of the non-coding genome and its regulatory potential underlies vertebrate neuronal diversity

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  DOI: 10.1016/j.neuron.2021.10.014
  
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sciencedirect.com/science/article/pii/S0896627321007820
Sep 2021
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Manipulation of TAD reorganization by chemical-dependent genome linking

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A Pliable Mediator Acts as a Functional Rather Than an Architectural Bridge between Promoters and Enhancers

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Three-Dimensional Genomic Structure and Cohesin Occupancy Correlate with Transcriptional Activity during Spermatogenesis

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Gain of CTCF-Anchored Chromatin Loops Marks the Exit from Naive Pluripotency

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Interactive actions of Bdnf methylation and cell metabolism for building neural resilience under the influence of diet

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Interplay between CTCF boundaries and a super enhancer controls cohesin extrusion trajectories and gene expression

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NLRP3 Regulates IL-4 Expression in TOX+ CD4+ T Cells of Cutaneous T Cell Lymphoma to Potentially Promote Disease Progression

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Suv4-20h2 protects against influenza virus infection by suppression of chromatin loop formation

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Phase separation of OCT4 controls TAD reorganization to promote cell fate transitions

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Transcription factor chromatin profiling genome-wide using uliCUT&RUN in single cells and individual blastocysts

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Distinct properties and functions of CTCF revealed by a rapidly inducible degron system

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Chromatin 3D interaction analysis of the STARD10 locus unveils FCHSD2 as a regulator of insulin secretion

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CTCF-Mediated Genome Architecture Regulates the Dosage of Mitotically Stable Mono-allelic Expression of Autosomal Genes

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Controlling gene activation by enhancers through a drug-inducible topological insulator

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ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL

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Repression of Transcription at DNA Breaks Requires Cohesin throughout Interphase and Prevents Genome Instability

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Genetic Variation in Type 1 Diabetes Reconfigures the 3D Chromatin Organization of T Cells and Alters Gene Expression

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RNA Interactions Are Essential for CTCF-Mediated Genome Organization

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The lncRNA Locus Handsdown Regulates Cardiac Gene Programs and Is Essential for Early Mouse Development

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Absolute quantification of cohesin, CTCF and their regulators in human cells

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Topoisomerase II-Induced Chromosome Breakage and Translocation Is Determined by Chromosome Architecture and Transcriptional Activity

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Three-Dimensional Genomic Structure and Cohesin Occupancy Correlate with Transcriptional Activity during Spermatogenesis

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Pioneer Factor-Nucleosome Binding Events during Differentiation Are Motif Encoded

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Improved CUT&RUN chromatin profiling tools

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SAMHD1 Modulates Early Steps during Human Cytomegalovirus Infection by Limiting NF-κB Activation

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Mitochondrial Damage and Activation of the STING Pathway Lead to Renal Inflammation and Fibrosis

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Distinct Classes of Chromatin Loops Revealed by Deletion of an RNA-Binding Region in CTCF

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cell.com/molecular-cell/fulltext/S1097-2765(19)30594-5
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Oncogenic Notch Promotes Long-Range Regulatory Interactions within Hyperconnected 3D Cliques

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Disease-Associated Short Tandem Repeats Co-localize with Chromatin Domain Boundaries

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ncbi.nlm.nih.gov/pmc/articles/PMC6019074/
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elifesciences.org/articles/36245
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Computational prediction of CTCF/cohesin-based intra-TAD loops that insulate chromatin contacts and gene expression in mouse liver

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CTCF-Binding Elements Mediate Accessibility of RAG Substrates During Chromatin Scanning

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Direct Promoter Repression by BCL11A Controls the Fetal to Adult Hemoglobin Switch

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ncbi.nlm.nih.gov/pmc/articles/PMC5889339/
Nov 2017
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CTCF-Mediated Enhancer-Promoter Interaction Is a Critical Regulator of Cell-to-Cell Variation of Gene Expression

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Non-coding Transcription Instructs Chromatin Folding and Compartmentalization to Dictate Enhancer-Promoter Communication and T Cell Fate

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Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development

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Genome Organization Drives Chromosome Fragility

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Dynamic Rewiring of Promoter-Anchored Chromatin Loops during Adipocyte Differentiation

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The BET Protein BRD2 Cooperates with CTCF to Enforce Transcriptional and Architectural Boundaries

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Multi-tiered Reorganization of the Genome during B Cell Affinity Maturation Anchored by a Germinal Center-Specific Locus Control Region

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Editing DNA Methylation in the Mammalian Genome

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