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A mouse organoid platform for modeling cerebral cortex development and cis-regulatory evolution in vitro

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  DOI: 10.1016/j.devcel.2025.08.001
  
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sciencedirect.com/science/article/pii/S1534580725005015
Aug 2025
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Activation of polo-like kinase 1 correlates with selective motor neuron vulnerability in familial ALS

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sciencedirect.com/science/article/pii/S2211124725008848
Jul 2025
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Epigenome profiling identifies H3K27me3 regulation of extracellular matrix composition in human corticogenesis

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  DOI: 10.1016/j.neuron.2025.06.016
  
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Forebrain assembloids support the development of fast-spiking human PVALB+ cortical interneurons and uncover schizophrenia-associated defects

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sciencedirect.com/science/article/pii/S0896627325004751
Jun 2025
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52.53.155.43/1288ca2c023f93e897d8e45f7e15a3c56268ea59/PDF-html.html
May 2025
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Multimodal analyses reveal genes driving electrophysiological maturation of neurons in the primate prefrontal cortex

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1-s2.0-S2589004225009666-main-html.html

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Maternal natural killer cells drive neuroimmune disorders in offspring through aberrant secretion of extracellular granzyme B

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  DOI: 10.1016/j.immuni.2025.04.028
  
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sciencedirect.com/science/article/pii/S1074761325001918
Mar 2025
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1-s2.0-S2589004225005565-main-html.html

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1. scibot 25 Mar 2025
  
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52.53.155.43/b1db22badef8af36be4ab54684947a2ba30a1586/PDF-html.html
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Translatome analysis reveals cellular network in DLK-dependent hippocampal glutamatergic neuron degeneration

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  DOI: 10.7554/eLife.101173
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11896613/
Jan 2025
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Cyclin-dependent kinase inhibitor p18 regulates lineage transitions of excitatory neurons, astrocytes, and interneurons in the mouse cortex

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1. scibot 16 Jan 2025
  
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  DOI: 10.1038/s44318-024-00325-9
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11730326/
Nov 2024
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Beyond Glycolysis: Aldolase A Is a Novel Effector in Reelin-Mediated Dendritic Development

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1. scibot 07 Nov 2024
  
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  DOI: 10.1523/JNEUROSCI.0072-24.2024
  
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jneurosci.org/content/44/42/e0072242024
Oct 2024
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The chromodomain protein CDYL confers forebrain identity to human cortical organoids by inhibiting neuronatin

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1. scibot 09 Oct 2024
  
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  DOI: 10.1016/j.celrep.2024.114814
  
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sciencedirect.com/science/article/pii/S2211124724011653
Aug 2024
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BEAM: A combinatorial recombinase toolbox for binary gene expression and mosaic genetic analysis

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  DOI: 10.1016/j.celrep.2024.114650
  
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sciencedirect.com/science/article/pii/S2211124724010015
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Corticothalamic Projection Neuron Development beyond Subtype Specification: Fog2 and Intersectional Controls Regulate Intraclass Neuronal Diversity

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1. scibot 02 Aug 2024
  
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  mouse anti-SATB2, 1:200 (RRID:AB_882455);
  
  DOI: 10.1016/s0896-6273(00)81251-9
  
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cell.com/neuron/pdfExtended/S0896-6273(16)30203-3
onlinelibrary.wiley.com onlinelibrary.wiley.com

Developmental and adult expression patterns of the G‐protein‐coupled receptor GPR88 in the rat: Establishment of a dual nuclear–cytoplasmic localization

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  DOI: 10.1002/cne.23991
  
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onlinelibrary.wiley.com/doi/10.1002/cne.23991/full
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Fezf2 expression in layer 5 projection neurons of mature mouse motor cortex

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  DOI: 10.1002/cne.23875
  
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onlinelibrary.wiley.com/doi/10.1002/cne.23875/full
Jul 2024
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Impaired phase separation and nucleolar functions in hiPSC models of SNORD118-related ribosomopathies

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  DOI: 10.1016/j.isci.2024.110430
  
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DCX knockout ferret reveals a neurogenic mechanism in cortical development

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Early Development of the Thalamo-Pallial Stage of the Tectofugal Visual Pathway in the Chicken (Gallus gallus)

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  DOI: 10.1002/cne.25657
  
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Cell-type-specific loops linked to RNA polymerase II elongation in human neural differentiation

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  DOI: 10.1016/j.xgen.2024.100606
  
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sciencedirect.com/science/article/pii/S2666979X24002003
Jun 2024
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Thalamic activity-dependent specification of sensory input neurons in the developing chick entopallium

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  DOI: 10.1002/cne.25627
  
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onlinelibrary.wiley.com/doi/10.1002/cne.25627
May 2024
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ARID1B controls transcriptional programs of axon projection in an organoid model of the human corpus callosum

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  DOI: 10.1016/j.stem.2024.04.014
  
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Beyond Glycolysis: Aldolase A is a Novel Effector in Reelin Mediated Dendritic Development

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  DOI: 10.1101/2024.01.12.575269
  
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Epistatic interactions between NMD and TRP53 control progenitor cell maintenance and brain size

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Apr 2024
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KCNJ2 inhibition mitigates mechanical injury in a human brain organoid model of traumatic brain injury

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  DOI: 10.1016/j.stem.2024.03.004
  
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sciencedirect.com/science/article/pii/S1934590924000857
Mar 2024
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Impaired oxysterol-liver X receptor signaling underlies aberrant cortical neurogenesis in a stem cell model of neurodevelopmental disorder

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  DOI: 10.1016/j.celrep.2024.113946
  
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sciencedirect.com/science/article/pii/S2211124724002742
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Human cortical neurogenesis is altered via glucocorticoid-mediated regulation of ZBTB16 expression

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  DOI: 10.1016/j.neuron.2024.02.005
  
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sciencedirect.com/science/article/pii/S0896627324000898
Feb 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Modulation of neuronal activity in cortical organoids with bioelectronic delivery of ions and neurotransmitters

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  DOI: 10.1016/j.crmeth.2023.100686
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10831944/
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3D bioprinting of human neural tissues with functional connectivity

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  RRID:AB_882455
  
  DOI: 10.1016/j.stem.2023.12.009
  
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sciencedirect.com/science/article/pii/S1934590923004393
Jan 2024
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Origin and development of the claustrum in rhesus macaque

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Human fetal brain self-organizes into long-term expanding organoids

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Histone methylation mediated by NSD1 is required for the establishment and maintenance of neuronal identities

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Truncated radial glia as a common precursor in the late corticogenesis of gyrencephalic mammals

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Single-cell long-read sequencing in human cerebral organoids uncovers cell-type-specific and autism-associated exons

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PCDH12 loss results in premature neuronal differentiation and impeded migration in a cortical organoid model

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Loss of Twist1 and balanced retinoic acid signaling from the meninges causes cortical folding in mice

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Neuronal miR-17-5p contributes to interhemispheric cortical connectivity defects induced by prenatal alcohol exposure

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Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex

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A novel mechanism for T1R-independent taste responses to concentrated sugars

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Apr 2023
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Origin and Development of the Claustrum in Rhesus Macaque

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Mar 2023
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Inter-axonal molecular crosstalk via Lumican proteoglycan sculpts murine cervical corticospinal innervation by distinct subpopulations

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Prenatal low-dose methylmercury exposure causes premature neuronal differentiation and autism-like behaviors in a rodent model

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Centrosomal microtubule nucleation regulates radial migration of projection neurons independently of polarization in the developing brain

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Epitranscriptomic regulation of cortical neurogenesis via Mettl8-dependent mitochondrial tRNA m3C modification

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Structural and functional integration of human forebrain organoids with the injured adult rat visual system

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Reversibility and developmental neuropathology of linear nevus sebaceous syndrome caused by dysregulation of the RAS pathway

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Temporal and sequential transcriptional dynamics define lineage shifts in corticogenesis

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A reference human induced pluripotent stem cell line for large-scale collaborative studies

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De-erosion of X chromosome dosage compensation by the editing of XIST regulatory regions restores the differentiation potential in hPSCs

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miR-409-3p represses Cited2 to refine neocortical layer V projection neuron identity

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Loss of non-motor kinesin KIF26A causes congenital brain malformations via dysregulated neuronal migration and axonal growth as well as apoptosis

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Integrin-KCNB1 potassium channel complexes regulate neocortical neuronal development and are implicated in epilepsy

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Subclass-specific expression patterns of MET receptor tyrosine kinase during development in medial prefrontal and visual cortices

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Ensembles of endothelial and mural cells promote angiogenesis in prenatal human brain

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Proper acquisition of cell class identity in organoids allows definition of fate specification programs of the human cerebral cortex

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Microglial control of neuronal development via somatic purinergic junctions

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Endothelial cells regulated by RNF20 orchestrate the proliferation and differentiation of neural precursor cells during embryonic development

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Human-specific ARHGAP11B ensures human-like basal progenitor levels in hominid cerebral organoids

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Aug 2022
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A microcarrier-based protocol for scalable generation and purification of human induced pluripotent stem cell-derived neurons and astrocytes

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Features of the Development of the Human Cerebral Cortex during the Second Trimester of Gestation

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Developmental cell death of cortical projection neurons is controlled by a Bcl11a/Bcl6‐dependent pathway

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Ubiquitination and deubiquitination of 4E-T regulate neural progenitor cell maintenance and neurogenesis by controlling P-body formation

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Hyperoxygenation During Mid-Neurogenesis Accelerates Cortical Development in the Fetal Mouse Brain

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Feb 2022
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miR-137 and miR-122, two outer subventricular zone non-coding RNAs, regulate basal progenitor expansion and neuronal differentiation

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Giant ankyrin-B mediates transduction of axon guidance and collateral branch pruning factor sema 3A

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Developmental defects in Huntington’s disease show that axonal growth and microtubule reorganization require NUMA1

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Crim1 and Kelch-like 14 exert complementary dual-directional developmental control over segmentally specific corticospinal axon projection targeting

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Corticospinal neuron subpopulation-specific developmental genes prospectively indicate mature segmentally specific axon projection targeting

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FLRT2 and FLRT3 cooperate in maintaining the tangential migratory streams of cortical interneurons during development

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Integration of Human Induced Pluripotent Stem Cell (hiPSC)-Derived Neurons into Rat Brain Circuits

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Rewiring of human neurodevelopmental gene regulatory programs by human accelerated regions

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Stem cell-derived neurons reflect features of protein networks, neuropathology, and cognitive outcome of their aged human donors

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Proneural genes define ground-state rules to regulate neurogenic patterning and cortical folding

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Method of Reduction Background Fluorescence in Human Fetal Brain Tissue and Quantitative Estimate of the Effect of Photobleaching

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Expression of transcription factors divides retinal ganglion cells into distinct classes

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ELAVL4, splicing, and glutamatergic dysfunction precede neuron loss in MAPT mutation cerebral organoids

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FOXG1 Orchestrates Neocortical Organization and Cortico-Cortical Connections

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The Hippo Pathway Prevents YAP/TAZ-Driven Hypertranscription and Controls Neural Progenitor Number

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The related neuronal endosomal proteins NEEP21 (Nsg1) and P19 (Nsg2) have divergent expression profiles in vivo

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Patient-derived iPSC-cerebral organoid modeling of the 17q11.2 microdeletion syndrome establishes CRLF3 as a critical regulator of neurogenesis

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A cerebellar-thalamocortical pathway drives behavioral context-dependent movement initiation

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Role of Satb1 and Satb2 Transcription Factors in the Glutamate Receptors Expression and Ca2+ Signaling in the Cortical Neurons In Vitro

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NeuroGT: A brain atlas of neurogenic tagging CreER drivers for birthdate-based classification and manipulation of mouse neurons

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Expression of human‐specific ARHGAP11B in mice leads to neocortex expansion and increased memory flexibility

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Multimerization of Zika Virus-NS5 Causes Ciliopathy and Forces Premature Neurogenesis

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The Zika Virus Capsid Disrupts Corticogenesis by Suppressing Dicer Activity and miRNA Biogenesis

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Serotonin Receptor 2A Activation Promotes Evolutionarily Relevant Basal Progenitor Proliferation in the Developing Neocortex

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Mutations in Spliceosomal Genes PPIL1 and PRP17 Cause Neurodegenerative Pontocerebellar Hypoplasia with Microcephaly

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Developmental Attenuation of Neuronal Apoptosis by Neural-Specific Splicing of Bak1 Microexon

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A Multiplex Human Pluripotent Stem Cell Platform Defines Molecular and Functional Subclasses of Autism-Related Genes

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Lengthening Neurogenic Period during Neocortical Development Causes a Hallmark of Neocortex Expansion

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Single-cell atlas of early human brain development highlights heterogeneity of human neuroepithelial cells and early radial glia

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Mosaic Analysis with Double Markers Reveals Distinct Sequential Functions of Lgl1 in Neural Stem Cells

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Unexpected Rule-Changes in a Working Memory Task Shape the Firing of Histologically Identified Delay-Tuned Neurons in the Prefrontal Cortex

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Identification of retinal ganglion cell types expressing the transcription factor Satb2 in three primate species

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A cell atlas of the chick retina based on single-cell transcriptomics

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LRIG1-Mediated Inhibition of EGF Receptor Signaling Regulates Neural Precursor Cell Proliferation in the Neocortex

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A transient role of the ciliary gene Inpp5e in controlling direct versus indirect neurogenesis in cortical development

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Tead transcription factors differentially regulate cortical development

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Smad Anchor for Receptor Activation (SARA) nuclear localization during development identifies layers V and VI of the neocortex

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A stochastic framework of neurogenesis underlies the assembly of neocortical cytoarchitecture

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Unexpected Rule-Changes in a Working Memory Task Shape the Firing of Histologically Identified Delay-Tuned Neurons in the Prefrontal Cortex

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Extracellular Vesicles Isolated from Human Induced Pluripotent Stem Cell-Derived Neurons Contain a Transcriptional Network

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Sliced Human Cortical Organoids for Modeling Distinct Cortical Layer Formation

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Tuba8 Drives Differentiation of Cortical Radial Glia into Apical Intermediate Progenitors by Tuning Modifications of Tubulin C Termini

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Cell Metabolic Alterations due to Mcph1 Mutation in Microcephaly

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Dorsal-to-Ventral Cortical Expansion Is Physically Primed by Ventral Streaming of Early Embryonic Preplate Neurons

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RhoA Controls Axon Extension Independent of Specification in the Developing Brain

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Neurons Derived from Human Induced Pluripotent Stem Cells Integrate into Rat Brain Circuits and Maintain both Excitatory and Inhibitory Synaptic Activities

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SETD5 Regulates Chromatin Methylation State and Preserves Global Transcriptional Fidelity during Brain Development and Neuronal Wiring

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PI3K-Yap activity drives cortical gyrification and hydrocephalus in mice

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Developmental Cytoplasmic-to-Nuclear Translocation of RNA-Binding Protein HuR Is Required for Adult Neurogenesis

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PlexinD1 and Sema3E determine laminar positioning of heterotopically projecting callosal neurons

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<Emphasis Type="Italic">SATB2</Emphasis> and <Emphasis Type="Italic">NGR1</Emphasis>: potential upstream regulatory factors in uterine leiomyomas

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The Protein Tyrosine Phosphatase Receptor Delta Regulates Developmental Neurogenesis

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N-cadherin-regulated FGFR ubiquitination and degradation control mammalian neocortical projection neuron migration

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Identification of Spinal Neurons Contributing to the Dorsal Column Projection Mediating Fine Touch and Corrective Motor Movements

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Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes

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Inducing Different Neuronal Subtypes from Astrocytes in the Injured Mouse Cerebral Cortex

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In Vivo Single-Cell Genotyping of Mouse Cortical Neurons Transfected with CRISPR/Cas9

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Long-term adult human brain slice cultures as a model system to study human CNS circuitry and disease

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ZEB1 Represses Neural Differentiation and Cooperates with CTBP2 to Dynamically Regulate Cell Migration during Neocortex Development

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Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina

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Ferret brain possesses young interneuron collections equivalent to human postnatal migratory streams

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  DOI: 10.1002/cne.24711
  
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Human-specific ARHGAP11B induces hallmarks of neocortical expansion in developing ferret neocortex

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  DOI: 10.7554/eLife.41241
  
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Human Huntington’s Disease iPSC-Derived Cortical Neurons Display Altered Transcriptomics, Morphology, and Maturation

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3D Culture Method for Alzheimer's Disease Modeling Reveals Interleukin-4 Rescues Aβ42-Induced Loss of Human Neural Stem Cell Plasticity

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Defects in the Alternative Splicing-Dependent Regulation of REST Cause Deafness

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hPSC Modeling Reveals that Fate Selection of Cortical Deep Projection Neurons Occurs in the Subplate

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Cross Talk between One-Carbon Metabolism, Eph Signaling, and Histone Methylation Promotes Neural Stem Cell Differentiation

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Developmental Upregulation of Ephrin-B1 Silences Sema3C/Neuropilin-1 Signaling during Post-crossing Navigation of Corpus Callosum Axons

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Kv2 Ion Channels Determine the Expression and Localization of the Associated AMIGO-1 Cell Adhesion Molecule in Adult Brain Neurons

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Transplantation of feeder‐free human induced pluripotent stem cell–derived cortical neuron progenitors in adult male Wistar rats with focal brain ischemia

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Mosaic Analysis with Double Markers Reveals Distinct Sequential Functions of Lgl1 in Neural Stem Cells

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Tridimensional Visualization and Analysis of Early Human Development

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Corticothalamic Projection Neuron Development beyond Subtype Specification: Fog2 and Intersectional Controls Regulate Intraclass Neuronal Diversity

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  mouse anti-SATB2, 1:200 (RRID:AB_882455);
  
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Combination of the clustered regularly interspaced short palindromic repeats (CRISPR)‐associated 9 technique with the piggybac transposon system for mouse in utero electroporation to study cortical development

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Developmental and adult expression patterns of the G‐protein‐coupled receptor GPR88 in the rat: Establishment of a dual nuclear–cytoplasmic localization

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Fezf2 expression in layer 5 projection neurons of mature mouse motor cortex

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