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Protocol for characterization of spatiotemporal network dynamics in cortical and hippocampal assembloids

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Hippocampal place code plasticity in CA1 requires postsynaptic membrane fusion

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sciencedirect.com/science/article/pii/S0896627326001704
Mar 2026
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Basal ganglia output dynamically controls skilled forelimb kinematics in real time

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biorxiv.org/content/10.64898/2026.03.09.710687v2
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Altered sensory neuron activity in a mouse model of post-burn pain and itch

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Nucleus accumbens shell activity reflects reward magnitude and training duration during Pavlovian and operant conditioning

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sciencedirect.com/science/article/pii/S1074742726000146
Feb 2026
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YORU: Animal behavior detection with object-based approach for real-time closed-loop feedback

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  DOI: 10.1126/sciadv.adw2109
  
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science.org/doi/10.1126/sciadv.adw2109
Dec 2025
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Hybrid Optogenetic and Electrical Stimulation of Retinal Ganglion Cells for Artificial Vision

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sciencedirect.com/science/article/pii/S1935861X25004140
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Protocol for wide-field brainstem imaging largely preserving the overlying cerebellum

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sciencedirect.com:5037/science/article/pii/S2666166725006641
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Parvalbumin interneurons drive depth-dependent vascular responses

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pmc.ncbi.nlm.nih.gov/articles/PMC12681769/
Nov 2025
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Distinct roles of prefrontal subregion feedback to the primary visual cortex across behavioral states

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sciencedirect.com:5037/science/article/pii/S089662732500844X
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In vivo two-photon microscopy for studies of neurovascular coupling in rodents: a beginner’s guide

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pmc.ncbi.nlm.nih.gov/articles/PMC12585108/
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Ex Vivo Modulation of the BNST by Parabrachial CGRP Projections Is Decreased After a History of Stress‐Induced Anxiety

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1. scibot 24 Nov 2025
  
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  AAV9‐hSyn‐Gcamp7f
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12597655/
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miR-199a functions downstream of MeCP2 in neurons of MECP2 duplication syndrome models

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1. scibot 24 Nov 2025
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12613072/
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Hippocampal sequences represent working memory and implicit timing

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pmc.ncbi.nlm.nih.gov/articles/PMC12588557/
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Responses to conflicting binocular stimuli in mouse primary visual cortex

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1. scibot 23 Nov 2025
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11722220/
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A real-time all-optical interface for dynamic perturbation of neural activity during behavior

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1. scibot 23 Nov 2025
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12570328/
Oct 2025
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Erasable hippocampal neural signatures predict memory discrimination

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1. scibot 16 Oct 2025
  
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  DOI: 10.1016/j.celrep.2025.115391
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12517107/
Aug 2025
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Directed cell-type recruitment during consolidation of a remote memory

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pmc.ncbi.nlm.nih.gov/articles/PMC12259166/
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A dedicated skin-to-brain circuit for cool sensation in mice

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1. scibot 11 Aug 2025
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12304207/
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Open-source, high performance miniature 2-photon microscopy systems for freely behaving animals

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pmc.ncbi.nlm.nih.gov/articles/PMC12318034/
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Separable dorsal raphe dopamine projections mimic the facets of a loneliness-like state

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pmc.ncbi.nlm.nih.gov/articles/PMC12316461/
Jul 2025
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Distinct Inhibitory Neurons Differently Shape Neuronal Codes for Sound Intensity in the Auditory Cortex

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pmc.ncbi.nlm.nih.gov/articles/PMC11714344/
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A flexible hippocampal population code for experience relative to reward

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pmc.ncbi.nlm.nih.gov/articles/PMC12229899/
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An optical brain-machine interface reveals a causal role of posterior parietal cortex in goal-directed navigation

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sciencedirect.com/science/article/pii/S2211124725006333
Jun 2025
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Prefrontal correlates of fear generalization during endocannabinoid depletion

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pmc.ncbi.nlm.nih.gov/articles/PMC12126220/
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Social Exclusion Amplifies Behavioral Responses to Physical Pain via Insular Neuromodulation

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  AAV1-Syn-jGCaMP7f-WPRE
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12132339/
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Glioma-neuronal circuit remodeling induces regional immunosuppression

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pmc.ncbi.nlm.nih.gov/articles/PMC12098748/
May 2025
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Aberration correction in long GRIN lens-based microendoscopes for extended field-of-view two-photon imaging in deep brain regions

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pmc.ncbi.nlm.nih.gov/articles/PMC12048154/
Apr 2025
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Reward integration in prefrontal-cortical and ventral-hippocampal nucleus accumbens inputs cooperatively modulates engagement

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pmc.ncbi.nlm.nih.gov/articles/PMC12000462/
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Minimally invasive, wide-field two-photon imaging of the brainstem at cellular resolution

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sciencedirect.com/science/article/pii/S2667237525000463
Mar 2025
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Microglia regulate nucleus accumbens synaptic development and circuit function underlying threat avoidance behaviors

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pmc.ncbi.nlm.nih.gov/articles/PMC11838711/
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Microglia regulate nucleus accumbens synaptic development and circuit function underlying threat avoidance behaviors

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pmc.ncbi.nlm.nih.gov/articles/PMC11761117/
Jan 2025
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Vectorized instructive signals in cortical dendrites during a brain-computer interface task

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pmc.ncbi.nlm.nih.gov/articles/PMC10635122/
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Kilohertz electrical stimulation evokes robust cellular responses like conventional frequencies but distinct population dynamics

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pmc.ncbi.nlm.nih.gov/articles/PMC11706954/
Dec 2024
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An optical brain-machine interface reveals a causal role of posterior parietal cortex in goal-directed navigation

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biorxiv.org/content/10.1101/2024.11.29.626034v1
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Sexually dimorphic neural encoding of threat discrimination in nucleus accumbens afferents drives suppression of reward behavior

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  DOI: 10.1101/2022.10.04.510865
  
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biorxiv.org/content/10.1101/2022.10.04.510865v1
Nov 2024
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Stress disrupts engram ensembles in lateral amygdala to generalize threat memory in mice

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Ultrasound pulse repetition frequency preferentially activates different neuron populations independent of cell type

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Oxytocin induces the formation of distinctive cortical representations and cognitions biased toward familiar mice

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State- and Circuit-Dependent Opponent Processing of Fear

1
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Aug 2024
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Cl−-dependent amplification of excitatory synaptic potentials at distal dendrites revealed by voltage imaging

1
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Prefrontal Cortex subregions provide distinct visual and behavioral feedback modulation to the Primary Visual Cortex

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Aberrant hippocampal Ca2+ microwaves following synapsin-dependent adeno-associated viral expression of Ca2+ indicators

1
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Prediction-error signals in anterior cingulate cortex drive task-switching

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Uncertainty gates redundancy in reward integration in prefrontal-cortical and ventral-hippocampal nucleus accumbens inputs to tune engagement

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Deletion of VPS50 protein in mouse brain impairs synaptic function and behavior

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Increased reactivity of the paraventricular nucleus of the hypothalamus and decreased threat responding in male rats following psilocin administration

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Glioblastoma disrupts cortical network activity at multiple spatial and temporal scales

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May 2024
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Topography and Ensemble Activity in the Auditory Cortex of a Mouse Model of Fragile X Syndrome

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State- and circuit-dependent opponent-processing of fear

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Highly local activation of inhibition at the seizure wavefront in vivo

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Locus Ceruleus Dynamics Are Suppressed during Licking and Enhanced Postlicking Independent of Taste Novelty

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Learning enhances representations of taste-guided decisions in the mouse gustatory insular cortex

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Prefrontal cortical dynorphin peptidergic transmission constrains threat-driven behavioral and network states

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Exploration biases forelimb reaching strategies

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Dynamic and selective engrams emerge with memory consolidation

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Large-scale cranial window for in vivo mouse brain imaging utilizing fluoropolymer nanosheet and light-curable resin

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Feb 2024
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Hippocampal sequences span experience relative to rewards

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Aberrant hippocampal Ca2+ micro-waves following synapsin-dependent adeno-associated viral expression of Ca2+ indicators

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Distinct topographic organization and network activity patterns of corticocollicular neurons within layer 5 auditory cortex

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Mar 2023
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Pain related neuronal ensembles in the primary somatosensory cortex contribute to hyperalgesia and anxiety

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Feb 2023
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An updated suite of viral vectors for in vivo calcium imaging using intracerebral and retro-orbital injections in male mice

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Jan 2023
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SSRN-id4267403-html.html

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Dec 2022
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Bonding of Neuropeptide Y on Graphene Oxide for Drug Delivery Applications to the Central Nervous System

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Calcium activity is a degraded estimate of spikes

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Oct 2022
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µ-Opioid Receptor Activation Reduces Glutamate Release in the preBötzinger Complex in Organotypic Slice Cultures

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Sep 2022
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Classical center-surround receptive fields facilitate novel object detection in retinal bipolar cells

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Aug 2022
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Distributed interfacing by nanoscale photodiodes enables single-neuron light activation and sensory enhancement in 3D spinal explants

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May 2022
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KCNJ8/ABCC9-containing K-ATP channel modulates brain vascular smooth muscle development and neurovascular coupling

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Apr 2022
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A corticothalamic circuit trades off speed for safety during decision-making under motivational conflict

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Mar 2022
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Large-scale two-photon calcium imaging in freely moving mice

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Nov 2021
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Long-term selective stimulation of transplanted neural stem/progenitor cells for spinal cord injury improves locomotor function

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scibot

URL

sciencedirect.com/science/article/pii/S2211124721015011
Sep 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

GABAergic inhibition of presynaptic Ca2+ transients in respiratory preBötzinger neurons in organotypic slice cultures

1
1. scibot 03 Sep 2021
  
  in Public
  
  RRID:Addgene_104488
  
  DOI: 10.1523/ENEURO.0154-21.2021
  
  Resource: RRID:Addgene_104488
  
  Curator: @scibot
  
  SciCrunch record: RRID:Addgene_104488
  
  What is this?
  
  RRID:Addgene_104488
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RRID:Addgene_104488

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scibot

URL

ncbi.nlm.nih.gov/pmc/articles/PMC8387147/
Feb 2021
www.sciencedirect.com www.sciencedirect.com

Extracting meaningful circuit-based calcium dynamics in astrocytes and neurons from adult mouse brain slices using single-photon GCaMP imaging

1
1. scibot 09 Feb 2021
  
  in Public
  
  RRID:AddGene_104488
  
  DOI: 10.1016/j.xpro.2021.100306
  
  Resource: RRID:Addgene_104488
  
  Curator: @Naa003
  
  SciCrunch record: RRID:Addgene_104488
  
  What is this?
  
  RRID:Addgene_104488 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:Addgene_104488

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scibot

URL

sciencedirect.com/science/article/pii/S2666166721000137
Dec 2020
www.cell.com www.cell.com

Neuropeptides Modulate Local Astrocytes to Regulate Adult Hippocampal Neural Stem Cells

1
1. scibot 19 Dec 2020
  
  in Public
  
  RRID:AddGene_104488
  
  DOI: 10.1016/j.neuron.2020.07.039
  
  Resource: RRID:Addgene_104488
  
  Curator: @Naa003
  
  SciCrunch record: RRID:Addgene_104488
  
  What is this?
  
  RRIDCUR:Validated RRID:Addgene_104488
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RRIDCUR:Validated

RRID:Addgene_104488

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scibot

URL

cell.com/neuron/abstract/S0896-6273(20)30604-8
Jan 2020
www.sciencedirect.com www.sciencedirect.com

Precise Coordination of Three-Dimensional Rotational Kinematics by Ventral Tegmental Area GABAergic Neurons

1
1. scibot 13 Jan 2020
  
  in Public
  
  RRID:Addgene_104488
  
  DOI: 10.1016/j.cub.2019.08.022
  
  Resource: RRID:Addgene_104488
  
  Curator: @ethanbadger
  
  SciCrunch record: RRID:Addgene_104488
  
  What is this?
  
  RRID:Addgene_104488 RRIDCUR:Validated
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RRIDCUR:Validated

RRID:Addgene_104488

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scibot

URL

sciencedirect.com/science/article/pii/S0960982219310383

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