58 Matching Annotations
  1. Sep 2024
  2. www.sciencedirect.com www.sciencedirect.com
    Genomic surveillance as a scalable framework for precision phage therapy against antibiotic-resistant pathogens
    1
    1. scibot 27 Sep 2024
      RRID:SCR_000131

      DOI: 10.1016/j.cell.2024.09.009

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    sciencedirect.com/science/article/pii/S0092867424010274
  3. Jul 2024
  4. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi
    1
    1. scibot 02 Jul 2024
      RRID:SCR_000131

      DOI: 10.1093/gigascience/giae036

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    ncbi.nlm.nih.gov/pmc/articles/PMC11212070/
  5. May 2024
  6. 52.53.155.43 52.53.155.43
    Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
    1
    1. scibot 10 May 2024
      RRID:SCR_000131

      DOI: 10.1101/2024.02.19.579948

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    52.53.155.43/cd1f9c7be80d56e211920ba04afd056c82fa391f/2024.02.19.579948.full-html.html
  7. Apr 2024
  8. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    IPEV: identification of prokaryotic and eukaryotic virus-derived sequences in virome using deep learning
    1
    1. scibot 24 Apr 2024
      RRID:SCR_000131

      DOI: 10.1093/gigascience/giae018

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    ncbi.nlm.nih.gov/pmc/articles/PMC11034026/
  9. Mar 2024
  10. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptomic analysis using RNA sequencing and phenotypic analysis of Salmonella enterica after acid exposure for different time durations using adaptive laboratory evolution
    1
    1. scibot 17 Mar 2024
      RRID:SCR_000131

      DOI: 10.3389/fmicb.2024.1348063

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    ncbi.nlm.nih.gov/pmc/articles/PMC10929716/
  11. www.sciencedirect.com www.sciencedirect.com
    A simple method for rapid cloning of complete herpesvirus genomes
    2
    1. scibot 06 Mar 2024
      RRID:SCR_000131

      DOI: 10.1016/j.crmeth.2024.100696

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    2. scibot 06 Mar 2024
      RRID:SCR_000131

      DOI: 10.1016/j.crmeth.2024.100696

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    sciencedirect.com/science/article/pii/S266723752400002X
  12. Dec 2023
  13. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    APGW/AKH Precursor from Rotifer Brachionus plicatilis and the DNA Loss Model Explain Evolutionary Trends of the Neuropeptide LWamide, APGWamide, RPCH, AKH, ACP, CRZ, and GnRH Families
    1
    1. scibot 22 Dec 2023
      RRID:SCR_000131

      DOI: 10.1007/s00239-023-10146-9

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    ncbi.nlm.nih.gov/pmc/articles/PMC10730642/
  14. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Adaptive laboratory evolution of Salmonella enterica in acid stress
    1
    1. scibot 02 Dec 2023
      RRID:SCR_000131

      DOI: 10.3389/fmicb.2023.1285421

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    ncbi.nlm.nih.gov/pmc/articles/PMC10687551/
  15. Oct 2023
  16. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Biosynthetic gene profiling and genomic potential of the novel photosynthetic marine bacterium Roseibaca domitiana
    1
    1. scibot 20 Oct 2023
      RRID:SCR_000131

      DOI: 10.3389/fmicb.2023.1238779

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    ncbi.nlm.nih.gov/pmc/articles/PMC10584327/
  17. Sep 2023
  18. 52.53.155.43 52.53.155.43
    jkad214-html.html
    1
    1. scibot 29 Sep 2023
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      DOI: 10.1093/g3journal/jkad214

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    52.53.155.43/3d9dadcff91e2baad90f130c0ca8d0eaf7826014/jkad214-html.html
  19. Jul 2023
  20. www.sciencedirect.com www.sciencedirect.com
    Bacterial clade-specific analysis identifies distinct epithelial responses in inflammatory bowel disease
    1
    1. scibot 25 Jul 2023
      RRID:SCR_000131

      DOI: 10.1016/j.xcrm.2023.101124

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    sciencedirect.com/science/article/pii/S2666379123002525
  21. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Characterization of Shigella flexneri in northern Vietnam in 2012–2016
    1
    1. scibot 08 Jul 2023
      RRID:SCR_000131

      DOI: 10.1099/acmi.0.000493.v4

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    ncbi.nlm.nih.gov/pmc/articles/PMC10323796/
  22. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An initial genomic blueprint of the healthy human oesophageal microbiome
    1
    1. scibot 08 Jul 2023
      RRID:SCR_000131

      DOI: 10.1099/acmi.0.000558.v3

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    ncbi.nlm.nih.gov/pmc/articles/PMC10323806/
  23. Jun 2023
  24. www.sciencedirect.com www.sciencedirect.com
    Fatal neonatal listeriosis following L. monocytogenes horizontal transmission highlights neonatal susceptibility to orally acquired listeriosis
    1
    1. scibot 29 Jun 2023
      RRID:SCR_000131

      DOI: 10.1016/j.xcrm.2023.101094

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    sciencedirect.com/science/article/pii/S2666379123002136
  25. Apr 2023
  26. academic.oup.com academic.oup.com
    GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
    1
    1. scibot 11 Apr 2023
      RRID:SCR_000131

      DOI: 10.1093/gigascience/giad022

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad022/7111624
  27. 52.53.155.43 52.53.155.43
    pdis-09-22-2093-a-html.html
    1
    1. scibot 07 Apr 2023
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      DOI: 10.1094/PDIS-09-22-2093-A

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    52.53.155.43/9d9728e9e39875218e8195f6816d86b75479975e/pdis-09-22-2093-a-html.html
  28. Mar 2023
  29. europepmc.org europepmc.org
    Metagenomic analysis of coastal Kenya female Aedes aegypti mosquito ...
    2
    1. scibot 30 Mar 2023
      RRID:SCR_000131

      DOI: 10.12688/wellcomeopenres.18868.1

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    2. scibot 30 Mar 2023
      RRID:SCR_000131

      DOI: 10.12688/wellcomeopenres.18868.1

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    europepmc.org/article/ppr/ppr634883
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The first complete mitochondrial genome of Diadema antillarum (Diadematoida, Diadematidae)
    1
    1. scibot 02 Mar 2023
      RRID:SCR_000131

      DOI: 10.46471/gigabyte.73

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    ncbi.nlm.nih.gov/pmc/articles/PMC9693923/
  31. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Long-read assemblies reveal structural diversity in genomes of organelles – an example with Acacia pycnantha
    1
    1. scibot 02 Mar 2023
      RRID:SCR_000131

      DOI: 10.46471/gigabyte.36

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650277/
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic features of Mycobacterium avium subsp. hominissuis isolated from pigs in Japan
    1
    1. scibot 02 Mar 2023
      RRID:SCR_000131

      DOI: 10.46471/gigabyte.33

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650289/
  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Infection dynamics, transmission, and evolution after an outbreak of porcine reproductive and respiratory syndrome virus
    1
    1. scibot 02 Mar 2023
      RRID:SCR_000131

      DOI: 10.3389/fmicb.2023.1109881

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    ncbi.nlm.nih.gov/pmc/articles/PMC9947509/
  34. Feb 2023
  35. www.sciencedirect.com www.sciencedirect.com
    A reversible mutation in a genomic hotspot saves bacterial swarms from extinction
    1
    1. scibot 09 Feb 2023
      RRID:SCR_000131

      DOI: 10.1016/j.isci.2023.106043

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    sciencedirect.com/science/article/pii/S2589004223001207
  36. Jan 2023
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic study and lipidomic bioassay of Leeuwenhoekiella parthenopeia: A novel rare biosphere marine bacterium that inhibits tumor cell viability
    1
    1. scibot 25 Jan 2023
      RRID:SCR_000131

      DOI: 10.3389/fmicb.2022.1090197

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    ncbi.nlm.nih.gov/pmc/articles/PMC9859067/
  38. Dec 2022
  39. 52.53.155.43 52.53.155.43
    acmi.0.000493.v1-html.html
    2
    1. scibot 29 Dec 2022
      RRID:SCR_000131

      DOI: 10.1093/bioinformatics/btr039

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    2. scibot 03 Dec 2022
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      DOI: 10.1099/acmi.0.000493.v1

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    52.53.155.43/db95533f8bf5a4bf086e0118a8e2955f165a587d/acmi.0.000493.v1 (1)-html.html
  40. www.frontiersin.org www.frontiersin.org
    Occurrence of mcr-1 and mcr-2 colistin resistance genes in porcine Escherichia coli isolates (2010–2020) and genomic characterization of mcr-2-positive E. coli
    1
    1. scibot 13 Dec 2022
      RRID:SCR_000131

      DOI: 10.3389/fmicb.2022.1076315

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    frontiersin.org/articles/10.3389/fmicb.2022.1076315/full
  41. Nov 2022
  42. 52.53.155.43 52.53.155.43
    acmi.0.000493.v1-html.html
    1
    1. scibot 22 Nov 2022
      RRID:SCR_000131

      DOI: 10.1093/bioinformatics/btr039

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    52.53.155.43/db95533f8bf5a4bf086e0118a8e2955f165a587d/acmi.0.000493.v1 (1)-html.html
  43. May 2022
  44. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Global Phylogeny of Mycobacterium avium and Identification of Mutation Hotspots During Niche Adaptation
    1
    1. scibot 24 May 2022
      RRID:SCR_000131

      DOI: 10.3389/fmicb.2022.892333

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    ncbi.nlm.nih.gov/pmc/articles/PMC9121174/
  45. Mar 2022
  46. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome size evolution in the diverse insect order Trichoptera
    1
    1. scibot 03 Mar 2022
      RRID:SCR_000131

      DOI: 10.1093/gigascience/giac011

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    ncbi.nlm.nih.gov/pmc/articles/PMC8881205/
  47. Jan 2022
  48. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Highly diverged lineages of Saccharomyces paradoxus in temperate to subtropical climate zones in China
    1
    1. scibot 12 Jan 2022
      RRID:SCR_000131

      DOI: 10.1002/yea.3688

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    onlinelibrary.wiley.com/doi/10.1002/yea.3688
  49. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Pan-genome analysis identifies intersecting roles for Pseudomonas specialized metabolites in potato pathogen inhibition
    1
    1. scibot 07 Jan 2022
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      DOI: 10.7554/eLife.71900

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    ncbi.nlm.nih.gov/pmc/articles/PMC8719888/
  50. Aug 2021
  51. www.frontiersin.org www.frontiersin.org
    Ammonia Oxidation by the Arctic Terrestrial Thaumarchaeote Candidatus Nitrosocosmicus arcticus Is Stimulated by Increasing Temperatures
    1
    1. scibot 14 Aug 2021
      RRID:SCR_000131

      DOI: 10.3389/fmicb.2019.01571

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    frontiersin.org/article/10.3389/fmicb.2019.01571/full
  52. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    1. scibot 08 Aug 2021
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      DOI: 10.7554/eLife.34364

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    ncbi.nlm.nih.gov/pmc/articles/PMC6175580/
  53. academic.oup.com academic.oup.com
    De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers
    1
    1. scibot 04 Aug 2021
      RRID:SCR_000131

      DOI: 10.1093/gigascience/giz039

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    academic.oup.com/gigascience/article/8/5/giz039/5488105
  54. Jul 2021
  55. academic.oup.com academic.oup.com
    Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes
    1
    1. scibot 28 Jul 2021
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      DOI: 10.1093/gigascience/giy158

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    academic.oup.com/gigascience/article/8/4/giy158/5241890
  56. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Major genetic discontinuity and novel toxigenic species in Clostridioides difficile taxonomy
    1
    1. scibot 03 Jul 2021
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      DOI: 10.7554/eLife.64325

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    ncbi.nlm.nih.gov/pmc/articles/PMC8241443/
  57. Jun 2021
  58. academic.oup.com academic.oup.com
    A hybrid de novo assembly of the sea pansy (Renilla muelleri) genome
    1
    1. scibot 23 Jun 2021
      RRID:SCR_000131

      DOI: 10.1093/gigascience/giz026

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    academic.oup.com/gigascience/article/8/4/giz026/5426564
  59. elifesciences.org elifesciences.org
    Myoglobin primary structure reveals multiple convergent transitions to semi-aquatic life in the world's smallest mammalian divers
    1
    1. scibot 18 Jun 2021
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      DOI: 10.7554/eLife.66797

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    elifesciences.org/articles/66797
  60. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    De novo genome assemblies of butterflies
    1
    1. scibot 04 Jun 2021
      RRID:SCR_000131

      DOI: 10.1093/gigascience/giab041

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    ncbi.nlm.nih.gov/pmc/articles/PMC8170690/
  61. Apr 2021
  62. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic Diversity and Virulence Potential of ESBL- and AmpC-β-Lactamase-Producing Escherichia coli Strains From Healthy Food Animals Across Europe
    1
    1. scibot 17 Apr 2021
      RRID:SCR_000131

      DOI: 10.3389/fmicb.2021.626774

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    ncbi.nlm.nih.gov/pmc/articles/PMC8047082/
  63. Mar 2021
  64. www.frontiersin.org www.frontiersin.org
    Comparative Genomics of Mycobacterium avium Subspecies Paratuberculosis Sheep Strains
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    1. scibot 03 Mar 2021
      RRID:SCR_000131

      DOI: 10.3389/fvets.2021.637637

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    frontiersin.org/article/10.3389/fvets.2021.637637/full
  65. Feb 2021
  66. academic.oup.com academic.oup.com
    Comparison of long-read methods for sequencing and assembly of a plant genome
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    1. scibot 27 Feb 2021
      RRID:SCR_000131

      DOI: 10.1093/gigascience/giaa146

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    academic.oup.com/gigascience/article/9/12/giaa146/6042729
  67. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing
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    1. scibot 24 Feb 2021
      RRID:SCR_000131

      DOI: 10.1093/gigascience/giaa002

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    ncbi.nlm.nih.gov/pmc/articles/PMC6998412/
  68. Nov 2020
  69. www.frontiersin.org www.frontiersin.org
    Employing MIC Data for Mink Pathogens to Propose Tentative Epidemiological Cut-Off Values: A Step Toward Rationalizing Antimicrobial Use in Mink
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    1. scibot 19 Nov 2020
      RRID:SCR_000131

      DOI: 10.3389/fvets.2020.544594

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  70. Oct 2020
  71. academic.oup.com academic.oup.com
    IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring
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    1. scibot 24 Oct 2020
      RRID:SCR_000131

      DOI: 10.1093/gigascience/giaa111

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    academic.oup.com/gigascience/article/9/10/giaa111/5918865
  72. Sep 2020
  73. elifesciences.org elifesciences.org
    Discovery of several thousand highly diverse circular DNA viruses
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    1. scibot 16 Sep 2020
      RRID:SCR_000131

      DOI: 10.7554/eLife.51971

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  74. www.sciencedirect.com www.sciencedirect.com
    Acquisition and Adaptation of Ultra-small Parasitic Reduced Genome Bacteria to Mammalian Hosts
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    1. scibot 16 Sep 2020
      RRID:SCR_000131

      DOI: 10.1016/j.celrep.2020.107939

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    sciencedirect.com/science/article/pii/S2211124720309207
  75. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identification of scavenger receptor B1 as the airway microfold cell receptor for Mycobacterium tuberculosis
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    1. scibot 04 Sep 2020
      RRID:SCR_000131

      DOI: 10.7554/eLife.52551

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    ncbi.nlm.nih.gov/pmc/articles/PMC7065847/
  76. Jan 2020
  77. www.sciencedirect.com www.sciencedirect.com
    Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease
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    1. scibot 13 Jan 2020
      RRID:SCR_000131

      DOI: 10.1016/j.chom.2019.10.009

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    sciencedirect.com/science/article/pii/S1931312819305335
  78. www.frontiersin.org www.frontiersin.org
    Ammonia Oxidation by the Arctic Terrestrial Thaumarchaeote Candidatus Nitrosocosmicus arcticus Is Stimulated by Increasing Temperatures
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    1. scibot 13 Jan 2020
      RRID:SCR_000131

      DOI: 10.3389/fmicb.2019.01571

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  79. academic.oup.com academic.oup.com
    Comparison of single-nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga toxin–producing Escherichia coli
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    1. scibot 13 Jan 2020
      RRID:SCR_000131

      DOI: 10.1093/gigascience/giz104

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    academic.oup.com/gigascience/article/8/8/giz104/5552683
  80. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    1. scibot 13 Jan 2020
      RRID:SCR_000131

      DOI: 10.1093/gigascience/giy127

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    ncbi.nlm.nih.gov/pmc/articles/PMC6275457/
  81. academic.oup.com academic.oup.com
    De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers
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    1. scibot 13 Jan 2020
      RRID:SCR_000131

      DOI: 10.1093/gigascience/giz039

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  82. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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      RRID:SCR_000131

      DOI: 10.1093/gigascience/giz026

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    ncbi.nlm.nih.gov/pmc/articles/PMC6446218/
  83. Nov 2018
  84. www.sciencedirect.com www.sciencedirect.com
    A Novel Eukaryotic Denitrification Pathway in Foraminifera
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    sciencedirect.com/science/article/pii/S0960982218308182
  85. Nov 2017
  86. www.sciencedirect.com www.sciencedirect.com
    Deciphering the Origin and Evolution of Hepatitis B Viruses by Means of a Family of Non-enveloped Fish Viruses - ScienceDirect
    1
    1. scibot 08 Nov 2017
      RRID:SCR_000131

      Curator: @Jmenke

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    sciencedirect.com/science/article/pii/S1931312817303025