65 Matching Annotations
  1. Jan 2026
  2. elifesciences.org elifesciences.org
    Neisseria gonorrhoeae LIN codes provide a robust, multi-resolution lineage nomenclature
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    elifesciences.org/articles/107758
  3. Aug 2025
  4. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Whole genome sequencing and assembly of the house sparrow, Passer domesticus
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    pmc.ncbi.nlm.nih.gov/articles/PMC12308067/
  5. Jul 2025
  6. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Bacteriophage infection drives loss of β-lactam resistance in methicillin-resistant Staphylococcus aureus
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    pmc.ncbi.nlm.nih.gov/articles/PMC12245174/
  7. May 2025
  8. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Efficiently constructing complete genomes with CycloneSEQ to fill gaps in bacterial draft assemblies
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    pmc.ncbi.nlm.nih.gov/articles/PMC12051259/
  9. Jan 2025
  10. www.sciencedirect.com www.sciencedirect.com
    Multiple plastid losses within photosynthetic stramenopiles revealed by comprehensive phylogenomics
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S0960982224016324
  11. Dec 2024
  12. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The telomere-to-telomere (T2T) genome provides insights into the evolution of specialized centromere sequences in sandalwood
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    pmc.ncbi.nlm.nih.gov/articles/PMC11633456/
  13. www.sciencedirect.com www.sciencedirect.com
    Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S0092867424012728
  14. Sep 2024
  15. www.sciencedirect.com www.sciencedirect.com
    Genomic surveillance as a scalable framework for precision phage therapy against antibiotic-resistant pathogens
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S0092867424010274
  16. Jul 2024
  17. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC11212070/
  18. May 2024
  19. 52.53.155.43 52.53.155.43
    Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    52.53.155.43/cd1f9c7be80d56e211920ba04afd056c82fa391f/2024.02.19.579948.full-html.html
  20. Apr 2024
  21. academic.oup.com academic.oup.com
    IPEV: identification of prokaryotic and eukaryotic virus-derived sequences in virome using deep learning
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giae018/7655775
  22. Mar 2024
  23. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptomic analysis using RNA sequencing and phenotypic analysis of Salmonella enterica after acid exposure for different time durations using adaptive laboratory evolution
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC10929716/
  24. www.sciencedirect.com www.sciencedirect.com
    A simple method for rapid cloning of complete herpesvirus genomes
    2
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S266723752400002X
  25. Dec 2023
  26. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    APGW/AKH Precursor from Rotifer Brachionus plicatilis and the DNA Loss Model Explain Evolutionary Trends of the Neuropeptide LWamide, APGWamide, RPCH, AKH, ACP, CRZ, and GnRH Families
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC10730642/
  27. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Adaptive laboratory evolution of Salmonella enterica in acid stress
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC10687551/
  28. Oct 2023
  29. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Biosynthetic gene profiling and genomic potential of the novel photosynthetic marine bacterium Roseibaca domitiana
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC10584327/
  30. Sep 2023
  31. 52.53.155.43 52.53.155.43
    jkad214-html.html
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    52.53.155.43/3d9dadcff91e2baad90f130c0ca8d0eaf7826014/jkad214-html.html
  32. Jul 2023
  33. www.sciencedirect.com www.sciencedirect.com
    Bacterial clade-specific analysis identifies distinct epithelial responses in inflammatory bowel disease
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S2666379123002525
  34. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Characterization of Shigella flexneri in northern Vietnam in 2012–2016
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC10323796/
  35. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An initial genomic blueprint of the healthy human oesophageal microbiome
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC10323806/
  36. Jun 2023
  37. www.sciencedirect.com www.sciencedirect.com
    Fatal neonatal listeriosis following L. monocytogenes horizontal transmission highlights neonatal susceptibility to orally acquired listeriosis
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S2666379123002136
  38. Apr 2023
  39. academic.oup.com academic.oup.com
    GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad022/7111624
  40. 52.53.155.43 52.53.155.43
    pdis-09-22-2093-a-html.html
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    52.53.155.43/9d9728e9e39875218e8195f6816d86b75479975e/pdis-09-22-2093-a-html.html
  41. Mar 2023
  42. europepmc.org europepmc.org
    Metagenomic analysis of coastal Kenya female Aedes aegypti mosquito ...
    2
    Visit annotations in context

    Tags

    Annotators

    URL

    europepmc.org/article/ppr/ppr634883
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The first complete mitochondrial genome of Diadema antillarum (Diadematoida, Diadematidae)
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC9693923/
  44. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Long-read assemblies reveal structural diversity in genomes of organelles – an example with Acacia pycnantha
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC9650277/
  45. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic features of Mycobacterium avium subsp. hominissuis isolated from pigs in Japan
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC9650289/
  46. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Infection dynamics, transmission, and evolution after an outbreak of porcine reproductive and respiratory syndrome virus
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC9947509/
  47. Feb 2023
  48. www.sciencedirect.com www.sciencedirect.com
    A reversible mutation in a genomic hotspot saves bacterial swarms from extinction
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S2589004223001207
  49. Jan 2023
  50. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic study and lipidomic bioassay of Leeuwenhoekiella parthenopeia: A novel rare biosphere marine bacterium that inhibits tumor cell viability
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC9859067/
  51. Dec 2022
  52. 52.53.155.43 52.53.155.43
    acmi.0.000493.v1-html.html
    2
    Visit annotations in context

    Tags

    Annotators

    URL

    52.53.155.43/db95533f8bf5a4bf086e0118a8e2955f165a587d/acmi.0.000493.v1 (1)-html.html
  53. www.frontiersin.org www.frontiersin.org
    Occurrence of mcr-1 and mcr-2 colistin resistance genes in porcine Escherichia coli isolates (2010–2020) and genomic characterization of mcr-2-positive E. coli
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    frontiersin.org/articles/10.3389/fmicb.2022.1076315/full
  54. Nov 2022
  55. 52.53.155.43 52.53.155.43
    acmi.0.000493.v1-html.html
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    52.53.155.43/db95533f8bf5a4bf086e0118a8e2955f165a587d/acmi.0.000493.v1 (1)-html.html
  56. May 2022
  57. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Global Phylogeny of Mycobacterium avium and Identification of Mutation Hotspots During Niche Adaptation
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC9121174/
  58. Mar 2022
  59. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome size evolution in the diverse insect order Trichoptera
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC8881205/
  60. Jan 2022
  61. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Highly diverged lineages of Saccharomyces paradoxus in temperate to subtropical climate zones in China
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    onlinelibrary.wiley.com/doi/10.1002/yea.3688
  62. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Pan-genome analysis identifies intersecting roles for Pseudomonas specialized metabolites in potato pathogen inhibition
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC8719888/
  63. Aug 2021
  64. www.frontiersin.org www.frontiersin.org
    Ammonia Oxidation by the Arctic Terrestrial Thaumarchaeote Candidatus Nitrosocosmicus arcticus Is Stimulated by Increasing Temperatures
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    frontiersin.org/article/10.3389/fmicb.2019.01571/full
  65. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC6175580/
  66. academic.oup.com academic.oup.com
    De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    academic.oup.com/gigascience/article/8/5/giz039/5488105
  67. Jul 2021
  68. academic.oup.com academic.oup.com
    Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    academic.oup.com/gigascience/article/8/4/giy158/5241890
  69. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Major genetic discontinuity and novel toxigenic species in Clostridioides difficile taxonomy
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC8241443/
  70. Jun 2021
  71. academic.oup.com academic.oup.com
    A hybrid de novo assembly of the sea pansy (Renilla muelleri) genome
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    academic.oup.com/gigascience/article/8/4/giz026/5426564
  72. elifesciences.org elifesciences.org
    Myoglobin primary structure reveals multiple convergent transitions to semi-aquatic life in the world's smallest mammalian divers
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    elifesciences.org/articles/66797
  73. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    De novo genome assemblies of butterflies
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC8170690/
  74. Apr 2021
  75. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic Diversity and Virulence Potential of ESBL- and AmpC-β-Lactamase-Producing Escherichia coli Strains From Healthy Food Animals Across Europe
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC8047082/
  76. Mar 2021
  77. www.frontiersin.org www.frontiersin.org
    Comparative Genomics of Mycobacterium avium Subspecies Paratuberculosis Sheep Strains
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    frontiersin.org/article/10.3389/fvets.2021.637637/full
  78. Feb 2021
  79. academic.oup.com academic.oup.com
    Comparison of long-read methods for sequencing and assembly of a plant genome
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    academic.oup.com/gigascience/article/9/12/giaa146/6042729
  80. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC6998412/
  81. Nov 2020
  82. www.frontiersin.org www.frontiersin.org
    Employing MIC Data for Mink Pathogens to Propose Tentative Epidemiological Cut-Off Values: A Step Toward Rationalizing Antimicrobial Use in Mink
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    frontiersin.org/article/10.3389/fvets.2020.544594/full
  83. Oct 2020
  84. academic.oup.com academic.oup.com
    IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    academic.oup.com/gigascience/article/9/10/giaa111/5918865
  85. Sep 2020
  86. elifesciences.org elifesciences.org
    Discovery of several thousand highly diverse circular DNA viruses
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    elifesciences.org/articles/51971
  87. www.sciencedirect.com www.sciencedirect.com
    Acquisition and Adaptation of Ultra-small Parasitic Reduced Genome Bacteria to Mammalian Hosts
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S2211124720309207
  88. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identification of scavenger receptor B1 as the airway microfold cell receptor for Mycobacterium tuberculosis
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC7065847/
  89. Jan 2020
  90. www.sciencedirect.com www.sciencedirect.com
    Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S1931312819305335
  91. www.frontiersin.org www.frontiersin.org
    Ammonia Oxidation by the Arctic Terrestrial Thaumarchaeote Candidatus Nitrosocosmicus arcticus Is Stimulated by Increasing Temperatures
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    frontiersin.org/article/10.3389/fmicb.2019.01571/full
  92. academic.oup.com academic.oup.com
    Comparison of single-nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga toxin–producing Escherichia coli
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    academic.oup.com/gigascience/article/8/8/giz104/5552683
  93. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC6275457/
  94. academic.oup.com academic.oup.com
    De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    academic.oup.com/gigascience/article/8/5/giz039/5488105
  95. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    ncbi.nlm.nih.gov/pmc/articles/PMC6446218/
  96. Nov 2018
  97. www.sciencedirect.com www.sciencedirect.com
    A Novel Eukaryotic Denitrification Pathway in Foraminifera
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S0960982218308182
  98. Nov 2017
  99. www.sciencedirect.com www.sciencedirect.com
    Deciphering the Origin and Evolution of Hepatitis B Viruses by Means of a Family of Non-enveloped Fish Viruses - ScienceDirect
    1
    Visit annotations in context

    Tags

    Annotators

    URL

    sciencedirect.com/science/article/pii/S1931312817303025