64 Matching Annotations
  1. Aug 2025
  2. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Whole genome sequencing and assembly of the house sparrow, Passer domesticus
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    pmc.ncbi.nlm.nih.gov/articles/PMC12308067/
  3. Jul 2025
  4. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Bacteriophage infection drives loss of β-lactam resistance in methicillin-resistant Staphylococcus aureus
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    pmc.ncbi.nlm.nih.gov/articles/PMC12245174/
  5. May 2025
  6. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Efficiently constructing complete genomes with CycloneSEQ to fill gaps in bacterial draft assemblies
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    pmc.ncbi.nlm.nih.gov/articles/PMC12051259/
  7. Jan 2025
  8. www.sciencedirect.com www.sciencedirect.com
    Multiple plastid losses within photosynthetic stramenopiles revealed by comprehensive phylogenomics
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    sciencedirect.com/science/article/pii/S0960982224016324
  9. Dec 2024
  10. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The telomere-to-telomere (T2T) genome provides insights into the evolution of specialized centromere sequences in sandalwood
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    pmc.ncbi.nlm.nih.gov/articles/PMC11633456/
  11. www.sciencedirect.com www.sciencedirect.com
    Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
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    sciencedirect.com/science/article/pii/S0092867424012728
  12. Sep 2024
  13. www.sciencedirect.com www.sciencedirect.com
    Genomic surveillance as a scalable framework for precision phage therapy against antibiotic-resistant pathogens
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    sciencedirect.com/science/article/pii/S0092867424010274
  14. Jul 2024
  15. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi
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    ncbi.nlm.nih.gov/pmc/articles/PMC11212070/
  16. May 2024
  17. 52.53.155.43 52.53.155.43
    Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
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    52.53.155.43/cd1f9c7be80d56e211920ba04afd056c82fa391f/2024.02.19.579948.full-html.html
  18. Apr 2024
  19. academic.oup.com academic.oup.com
    IPEV: identification of prokaryotic and eukaryotic virus-derived sequences in virome using deep learning
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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giae018/7655775
  20. Mar 2024
  21. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptomic analysis using RNA sequencing and phenotypic analysis of Salmonella enterica after acid exposure for different time durations using adaptive laboratory evolution
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    ncbi.nlm.nih.gov/pmc/articles/PMC10929716/
  22. www.sciencedirect.com www.sciencedirect.com
    A simple method for rapid cloning of complete herpesvirus genomes
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    sciencedirect.com/science/article/pii/S266723752400002X
  23. Dec 2023
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    APGW/AKH Precursor from Rotifer Brachionus plicatilis and the DNA Loss Model Explain Evolutionary Trends of the Neuropeptide LWamide, APGWamide, RPCH, AKH, ACP, CRZ, and GnRH Families
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    ncbi.nlm.nih.gov/pmc/articles/PMC10730642/
  25. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Adaptive laboratory evolution of Salmonella enterica in acid stress
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    ncbi.nlm.nih.gov/pmc/articles/PMC10687551/
  26. Oct 2023
  27. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Biosynthetic gene profiling and genomic potential of the novel photosynthetic marine bacterium Roseibaca domitiana
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    ncbi.nlm.nih.gov/pmc/articles/PMC10584327/
  28. Sep 2023
  29. 52.53.155.43 52.53.155.43
    jkad214-html.html
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  30. Jul 2023
  31. www.sciencedirect.com www.sciencedirect.com
    Bacterial clade-specific analysis identifies distinct epithelial responses in inflammatory bowel disease
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    sciencedirect.com/science/article/pii/S2666379123002525
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Characterization of Shigella flexneri in northern Vietnam in 2012–2016
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    ncbi.nlm.nih.gov/pmc/articles/PMC10323796/
  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An initial genomic blueprint of the healthy human oesophageal microbiome
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    ncbi.nlm.nih.gov/pmc/articles/PMC10323806/
  34. Jun 2023
  35. www.sciencedirect.com www.sciencedirect.com
    Fatal neonatal listeriosis following L. monocytogenes horizontal transmission highlights neonatal susceptibility to orally acquired listeriosis
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    sciencedirect.com/science/article/pii/S2666379123002136
  36. Apr 2023
  37. academic.oup.com academic.oup.com
    GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad022/7111624
  38. 52.53.155.43 52.53.155.43
    pdis-09-22-2093-a-html.html
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  39. Mar 2023
  40. europepmc.org europepmc.org
    Metagenomic analysis of coastal Kenya female Aedes aegypti mosquito ...
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    europepmc.org/article/ppr/ppr634883
  41. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The first complete mitochondrial genome of Diadema antillarum (Diadematoida, Diadematidae)
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    ncbi.nlm.nih.gov/pmc/articles/PMC9693923/
  42. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Long-read assemblies reveal structural diversity in genomes of organelles – an example with Acacia pycnantha
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    ncbi.nlm.nih.gov/pmc/articles/PMC9650277/
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic features of Mycobacterium avium subsp. hominissuis isolated from pigs in Japan
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    ncbi.nlm.nih.gov/pmc/articles/PMC9650289/
  44. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Infection dynamics, transmission, and evolution after an outbreak of porcine reproductive and respiratory syndrome virus
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    ncbi.nlm.nih.gov/pmc/articles/PMC9947509/
  45. Feb 2023
  46. www.sciencedirect.com www.sciencedirect.com
    A reversible mutation in a genomic hotspot saves bacterial swarms from extinction
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    sciencedirect.com/science/article/pii/S2589004223001207
  47. Jan 2023
  48. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic study and lipidomic bioassay of Leeuwenhoekiella parthenopeia: A novel rare biosphere marine bacterium that inhibits tumor cell viability
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    ncbi.nlm.nih.gov/pmc/articles/PMC9859067/
  49. Dec 2022
  50. 52.53.155.43 52.53.155.43
    acmi.0.000493.v1-html.html
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    52.53.155.43/db95533f8bf5a4bf086e0118a8e2955f165a587d/acmi.0.000493.v1 (1)-html.html
  51. www.frontiersin.org www.frontiersin.org
    Occurrence of mcr-1 and mcr-2 colistin resistance genes in porcine Escherichia coli isolates (2010–2020) and genomic characterization of mcr-2-positive E. coli
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    frontiersin.org/articles/10.3389/fmicb.2022.1076315/full
  52. Nov 2022
  53. 52.53.155.43 52.53.155.43
    acmi.0.000493.v1-html.html
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  54. May 2022
  55. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Global Phylogeny of Mycobacterium avium and Identification of Mutation Hotspots During Niche Adaptation
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    ncbi.nlm.nih.gov/pmc/articles/PMC9121174/
  56. Mar 2022
  57. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome size evolution in the diverse insect order Trichoptera
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    ncbi.nlm.nih.gov/pmc/articles/PMC8881205/
  58. Jan 2022
  59. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Highly diverged lineages of Saccharomyces paradoxus in temperate to subtropical climate zones in China
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    onlinelibrary.wiley.com/doi/10.1002/yea.3688
  60. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Pan-genome analysis identifies intersecting roles for Pseudomonas specialized metabolites in potato pathogen inhibition
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    ncbi.nlm.nih.gov/pmc/articles/PMC8719888/
  61. Aug 2021
  62. www.frontiersin.org www.frontiersin.org
    Ammonia Oxidation by the Arctic Terrestrial Thaumarchaeote Candidatus Nitrosocosmicus arcticus Is Stimulated by Increasing Temperatures
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    frontiersin.org/article/10.3389/fmicb.2019.01571/full
  63. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    ncbi.nlm.nih.gov/pmc/articles/PMC6175580/
  64. academic.oup.com academic.oup.com
    De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers
    1
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    academic.oup.com/gigascience/article/8/5/giz039/5488105
  65. Jul 2021
  66. academic.oup.com academic.oup.com
    Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes
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    academic.oup.com/gigascience/article/8/4/giy158/5241890
  67. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Major genetic discontinuity and novel toxigenic species in Clostridioides difficile taxonomy
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    ncbi.nlm.nih.gov/pmc/articles/PMC8241443/
  68. Jun 2021
  69. academic.oup.com academic.oup.com
    A hybrid de novo assembly of the sea pansy (Renilla muelleri) genome
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    academic.oup.com/gigascience/article/8/4/giz026/5426564
  70. elifesciences.org elifesciences.org
    Myoglobin primary structure reveals multiple convergent transitions to semi-aquatic life in the world's smallest mammalian divers
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    elifesciences.org/articles/66797
  71. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    De novo genome assemblies of butterflies
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    ncbi.nlm.nih.gov/pmc/articles/PMC8170690/
  72. Apr 2021
  73. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic Diversity and Virulence Potential of ESBL- and AmpC-β-Lactamase-Producing Escherichia coli Strains From Healthy Food Animals Across Europe
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    ncbi.nlm.nih.gov/pmc/articles/PMC8047082/
  74. Mar 2021
  75. www.frontiersin.org www.frontiersin.org
    Comparative Genomics of Mycobacterium avium Subspecies Paratuberculosis Sheep Strains
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    frontiersin.org/article/10.3389/fvets.2021.637637/full
  76. Feb 2021
  77. academic.oup.com academic.oup.com
    Comparison of long-read methods for sequencing and assembly of a plant genome
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    academic.oup.com/gigascience/article/9/12/giaa146/6042729
  78. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing
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    ncbi.nlm.nih.gov/pmc/articles/PMC6998412/
  79. Nov 2020
  80. www.frontiersin.org www.frontiersin.org
    Employing MIC Data for Mink Pathogens to Propose Tentative Epidemiological Cut-Off Values: A Step Toward Rationalizing Antimicrobial Use in Mink
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    frontiersin.org/article/10.3389/fvets.2020.544594/full
  81. Oct 2020
  82. academic.oup.com academic.oup.com
    IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring
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    academic.oup.com/gigascience/article/9/10/giaa111/5918865
  83. Sep 2020
  84. elifesciences.org elifesciences.org
    Discovery of several thousand highly diverse circular DNA viruses
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    elifesciences.org/articles/51971
  85. www.sciencedirect.com www.sciencedirect.com
    Acquisition and Adaptation of Ultra-small Parasitic Reduced Genome Bacteria to Mammalian Hosts
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    sciencedirect.com/science/article/pii/S2211124720309207
  86. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identification of scavenger receptor B1 as the airway microfold cell receptor for Mycobacterium tuberculosis
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    ncbi.nlm.nih.gov/pmc/articles/PMC7065847/
  87. Jan 2020
  88. www.sciencedirect.com www.sciencedirect.com
    Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease
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    sciencedirect.com/science/article/pii/S1931312819305335
  89. www.frontiersin.org www.frontiersin.org
    Ammonia Oxidation by the Arctic Terrestrial Thaumarchaeote Candidatus Nitrosocosmicus arcticus Is Stimulated by Increasing Temperatures
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    frontiersin.org/article/10.3389/fmicb.2019.01571/full
  90. academic.oup.com academic.oup.com
    Comparison of single-nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga toxin–producing Escherichia coli
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    academic.oup.com/gigascience/article/8/8/giz104/5552683
  91. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    ncbi.nlm.nih.gov/pmc/articles/PMC6275457/
  92. academic.oup.com academic.oup.com
    De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers
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    academic.oup.com/gigascience/article/8/5/giz039/5488105
  93. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    ncbi.nlm.nih.gov/pmc/articles/PMC6446218/
  94. Nov 2018
  95. www.sciencedirect.com www.sciencedirect.com
    A Novel Eukaryotic Denitrification Pathway in Foraminifera
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    sciencedirect.com/science/article/pii/S0960982218308182
  96. Nov 2017
  97. www.sciencedirect.com www.sciencedirect.com
    Deciphering the Origin and Evolution of Hepatitis B Viruses by Means of a Family of Non-enveloped Fish Viruses - ScienceDirect
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    sciencedirect.com/science/article/pii/S1931312817303025