69 Matching Annotations
  1. Last 7 days
  2. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Emergence of multidrug-resistant blaCTX-M-65/gyrA_D87Y clones among the circulating Salmonella Infantis population in Mexico
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    pmc.ncbi.nlm.nih.gov/articles/PMC12908943/
  3. Feb 2026
  4. rsnz.onlinelibrary.wiley.com rsnz.onlinelibrary.wiley.com
    Whole Genome Sequencing of a White Color Strain of Pleurotus djamor (Basidiomycota, Fungi) from Sri Lanka: Unveiling the Genes Associated with Bioactive Properties
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    rsnz.onlinelibrary.wiley.com/doi/10.1002/nzb2.70048
  5. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Genomic diversity and clade clustering of Burkholderia pseudomallei and B. thailandensis prophages with soil-derived phages
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    pmc.ncbi.nlm.nih.gov/articles/PMC12860723/
  6. Jan 2026
  7. www.sciencedirect.com www.sciencedirect.com
    Specificities of pediatric listeriosis beyond the neonatal period: A national prospective study
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    sciencedirect.com/science/article/pii/S2666634025003605
  8. elifesciences.org elifesciences.org
    Neisseria gonorrhoeae LIN codes provide a robust, multi-resolution lineage nomenclature
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    elifesciences.org/articles/107758
  9. Aug 2025
  10. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Whole genome sequencing and assembly of the house sparrow, Passer domesticus
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    pmc.ncbi.nlm.nih.gov/articles/PMC12308067/
  11. Jul 2025
  12. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Bacteriophage infection drives loss of β-lactam resistance in methicillin-resistant Staphylococcus aureus
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    pmc.ncbi.nlm.nih.gov/articles/PMC12245174/
  13. May 2025
  14. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Efficiently constructing complete genomes with CycloneSEQ to fill gaps in bacterial draft assemblies
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    pmc.ncbi.nlm.nih.gov/articles/PMC12051259/
  15. Jan 2025
  16. www.sciencedirect.com www.sciencedirect.com
    Multiple plastid losses within photosynthetic stramenopiles revealed by comprehensive phylogenomics
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    sciencedirect.com/science/article/pii/S0960982224016324
  17. Dec 2024
  18. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The telomere-to-telomere (T2T) genome provides insights into the evolution of specialized centromere sequences in sandalwood
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    pmc.ncbi.nlm.nih.gov/articles/PMC11633456/
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    Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
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    sciencedirect.com/science/article/pii/S0092867424012728
  20. Sep 2024
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    Genomic surveillance as a scalable framework for precision phage therapy against antibiotic-resistant pathogens
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    sciencedirect.com/science/article/pii/S0092867424010274
  22. Jul 2024
  23. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi
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    ncbi.nlm.nih.gov/pmc/articles/PMC11212070/
  24. May 2024
  25. 52.53.155.43 52.53.155.43
    Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
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  26. Apr 2024
  27. academic.oup.com academic.oup.com
    IPEV: identification of prokaryotic and eukaryotic virus-derived sequences in virome using deep learning
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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giae018/7655775
  28. Mar 2024
  29. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptomic analysis using RNA sequencing and phenotypic analysis of Salmonella enterica after acid exposure for different time durations using adaptive laboratory evolution
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    ncbi.nlm.nih.gov/pmc/articles/PMC10929716/
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    A simple method for rapid cloning of complete herpesvirus genomes
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    sciencedirect.com/science/article/pii/S266723752400002X
  31. Dec 2023
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    APGW/AKH Precursor from Rotifer Brachionus plicatilis and the DNA Loss Model Explain Evolutionary Trends of the Neuropeptide LWamide, APGWamide, RPCH, AKH, ACP, CRZ, and GnRH Families
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    ncbi.nlm.nih.gov/pmc/articles/PMC10730642/
  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Adaptive laboratory evolution of Salmonella enterica in acid stress
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    ncbi.nlm.nih.gov/pmc/articles/PMC10687551/
  34. Oct 2023
  35. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Biosynthetic gene profiling and genomic potential of the novel photosynthetic marine bacterium Roseibaca domitiana
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    ncbi.nlm.nih.gov/pmc/articles/PMC10584327/
  36. Sep 2023
  37. 52.53.155.43 52.53.155.43
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  38. Jul 2023
  39. www.sciencedirect.com www.sciencedirect.com
    Bacterial clade-specific analysis identifies distinct epithelial responses in inflammatory bowel disease
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  40. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Characterization of Shigella flexneri in northern Vietnam in 2012–2016
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  41. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An initial genomic blueprint of the healthy human oesophageal microbiome
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  42. Jun 2023
  43. www.sciencedirect.com www.sciencedirect.com
    Fatal neonatal listeriosis following L. monocytogenes horizontal transmission highlights neonatal susceptibility to orally acquired listeriosis
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    sciencedirect.com/science/article/pii/S2666379123002136
  44. Apr 2023
  45. academic.oup.com academic.oup.com
    GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad022/7111624
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  47. Mar 2023
  48. europepmc.org europepmc.org
    Metagenomic analysis of coastal Kenya female Aedes aegypti mosquito ...
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    europepmc.org/article/ppr/ppr634883
  49. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The first complete mitochondrial genome of Diadema antillarum (Diadematoida, Diadematidae)
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    ncbi.nlm.nih.gov/pmc/articles/PMC9693923/
  50. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Long-read assemblies reveal structural diversity in genomes of organelles – an example with Acacia pycnantha
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    ncbi.nlm.nih.gov/pmc/articles/PMC9650277/
  51. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic features of Mycobacterium avium subsp. hominissuis isolated from pigs in Japan
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    ncbi.nlm.nih.gov/pmc/articles/PMC9650289/
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    Infection dynamics, transmission, and evolution after an outbreak of porcine reproductive and respiratory syndrome virus
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    ncbi.nlm.nih.gov/pmc/articles/PMC9947509/
  53. Feb 2023
  54. www.sciencedirect.com www.sciencedirect.com
    A reversible mutation in a genomic hotspot saves bacterial swarms from extinction
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  55. Jan 2023
  56. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic study and lipidomic bioassay of Leeuwenhoekiella parthenopeia: A novel rare biosphere marine bacterium that inhibits tumor cell viability
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    ncbi.nlm.nih.gov/pmc/articles/PMC9859067/
  57. Dec 2022
  58. 52.53.155.43 52.53.155.43
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  59. www.frontiersin.org www.frontiersin.org
    Occurrence of mcr-1 and mcr-2 colistin resistance genes in porcine Escherichia coli isolates (2010–2020) and genomic characterization of mcr-2-positive E. coli
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  60. Nov 2022
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  62. May 2022
  63. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Global Phylogeny of Mycobacterium avium and Identification of Mutation Hotspots During Niche Adaptation
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    ncbi.nlm.nih.gov/pmc/articles/PMC9121174/
  64. Mar 2022
  65. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome size evolution in the diverse insect order Trichoptera
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    ncbi.nlm.nih.gov/pmc/articles/PMC8881205/
  66. Jan 2022
  67. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Highly diverged lineages of Saccharomyces paradoxus in temperate to subtropical climate zones in China
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    onlinelibrary.wiley.com/doi/10.1002/yea.3688
  68. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Pan-genome analysis identifies intersecting roles for Pseudomonas specialized metabolites in potato pathogen inhibition
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    ncbi.nlm.nih.gov/pmc/articles/PMC8719888/
  69. Aug 2021
  70. www.frontiersin.org www.frontiersin.org
    Ammonia Oxidation by the Arctic Terrestrial Thaumarchaeote Candidatus Nitrosocosmicus arcticus Is Stimulated by Increasing Temperatures
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    frontiersin.org/article/10.3389/fmicb.2019.01571/full
  71. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    ncbi.nlm.nih.gov/pmc/articles/PMC6175580/
  72. academic.oup.com academic.oup.com
    De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers
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    academic.oup.com/gigascience/article/8/5/giz039/5488105
  73. Jul 2021
  74. academic.oup.com academic.oup.com
    Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes
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    academic.oup.com/gigascience/article/8/4/giy158/5241890
  75. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Major genetic discontinuity and novel toxigenic species in Clostridioides difficile taxonomy
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    ncbi.nlm.nih.gov/pmc/articles/PMC8241443/
  76. Jun 2021
  77. academic.oup.com academic.oup.com
    A hybrid de novo assembly of the sea pansy (Renilla muelleri) genome
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    academic.oup.com/gigascience/article/8/4/giz026/5426564
  78. elifesciences.org elifesciences.org
    Myoglobin primary structure reveals multiple convergent transitions to semi-aquatic life in the world's smallest mammalian divers
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    elifesciences.org/articles/66797
  79. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    De novo genome assemblies of butterflies
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    ncbi.nlm.nih.gov/pmc/articles/PMC8170690/
  80. Apr 2021
  81. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic Diversity and Virulence Potential of ESBL- and AmpC-β-Lactamase-Producing Escherichia coli Strains From Healthy Food Animals Across Europe
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    ncbi.nlm.nih.gov/pmc/articles/PMC8047082/
  82. Mar 2021
  83. www.frontiersin.org www.frontiersin.org
    Comparative Genomics of Mycobacterium avium Subspecies Paratuberculosis Sheep Strains
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    frontiersin.org/article/10.3389/fvets.2021.637637/full
  84. Feb 2021
  85. academic.oup.com academic.oup.com
    Comparison of long-read methods for sequencing and assembly of a plant genome
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    academic.oup.com/gigascience/article/9/12/giaa146/6042729
  86. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing
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    ncbi.nlm.nih.gov/pmc/articles/PMC6998412/
  87. Nov 2020
  88. www.frontiersin.org www.frontiersin.org
    Employing MIC Data for Mink Pathogens to Propose Tentative Epidemiological Cut-Off Values: A Step Toward Rationalizing Antimicrobial Use in Mink
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    frontiersin.org/article/10.3389/fvets.2020.544594/full
  89. Oct 2020
  90. academic.oup.com academic.oup.com
    IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring
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    academic.oup.com/gigascience/article/9/10/giaa111/5918865
  91. Sep 2020
  92. elifesciences.org elifesciences.org
    Discovery of several thousand highly diverse circular DNA viruses
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    elifesciences.org/articles/51971
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    Acquisition and Adaptation of Ultra-small Parasitic Reduced Genome Bacteria to Mammalian Hosts
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    sciencedirect.com/science/article/pii/S2211124720309207
  94. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identification of scavenger receptor B1 as the airway microfold cell receptor for Mycobacterium tuberculosis
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    ncbi.nlm.nih.gov/pmc/articles/PMC7065847/
  95. Jan 2020
  96. www.sciencedirect.com www.sciencedirect.com
    Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease
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    sciencedirect.com/science/article/pii/S1931312819305335
  97. www.frontiersin.org www.frontiersin.org
    Ammonia Oxidation by the Arctic Terrestrial Thaumarchaeote Candidatus Nitrosocosmicus arcticus Is Stimulated by Increasing Temperatures
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    frontiersin.org/article/10.3389/fmicb.2019.01571/full
  98. academic.oup.com academic.oup.com
    Comparison of single-nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga toxin–producing Escherichia coli
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    academic.oup.com/gigascience/article/8/8/giz104/5552683
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    ncbi.nlm.nih.gov/pmc/articles/PMC6275457/
  100. academic.oup.com academic.oup.com
    De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers
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    academic.oup.com/gigascience/article/8/5/giz039/5488105
  101. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    ncbi.nlm.nih.gov/pmc/articles/PMC6446218/
  102. Nov 2018
  103. www.sciencedirect.com www.sciencedirect.com
    A Novel Eukaryotic Denitrification Pathway in Foraminifera
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    sciencedirect.com/science/article/pii/S0960982218308182
  104. Nov 2017
  105. www.sciencedirect.com www.sciencedirect.com
    Deciphering the Origin and Evolution of Hepatitis B Viruses by Means of a Family of Non-enveloped Fish Viruses - ScienceDirect
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    sciencedirect.com/science/article/pii/S1931312817303025