47 Matching Annotations
  1. Mar 2024
  2. www.sciencedirect.com www.sciencedirect.com
    Follicular lymphoma B cells exhibit heterogeneous transcriptional states with associated somatic alterations and tumor microenvironments
    2
    1. scibot 01 Mar 2024
      RRID:SCR_000559

      DOI: 10.1016/j.xcrm.2024.101443

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    2. scibot 01 Mar 2024
      RRID:SCR_000559

      DOI: 10.1016/j.xcrm.2024.101443

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    sciencedirect.com/science/article/pii/S2666379124000661
  3. Feb 2024
  4. 52.53.155.43 52.53.155.43
    can-23-1129-html.html
    1
    1. scibot 23 Feb 2024
      RRID:SCR_000559

      DOI: 10.1158/0008-5472.can-23-1129

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    52.53.155.43/f18faff86a38ad159824c95dcf032e1a8bb0e968/133-html.html
  5. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Immunogenomic Landscape of Neuroendocrine Prostate Cancer
    1
    1. scibot 02 Feb 2024
      RRID:SCR_000559

      DOI: 10.1158/1078-0432.CCR-22-3743

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    ncbi.nlm.nih.gov/pmc/articles/PMC10524949/
  6. Jan 2024
  7. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Leveraging tissue-specific enhancer-target gene regulatory networks identifies enhancer somatic mutations that functionally impact lung cancer
    1
    1. scibot 05 Jan 2024
      RRID:SCR_000559

      DOI: 10.1158/0008-5472.CAN-23-1129

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    ncbi.nlm.nih.gov/pmc/articles/PMC10758689/
  8. Dec 2023
  9. www.sciencedirect.com www.sciencedirect.com
    Integrated multi-omics profiling to dissect the spatiotemporal evolution of metastatic hepatocellular carcinoma
    1
    1. scibot 16 Dec 2023
      RRID:SCR_000559

      DOI: 10.1016/j.ccell.2023.11.010

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    sciencedirect.com/science/article/pii/S1535610823004014
  10. 52.53.155.43 52.53.155.43
    can-23-1129-html.html
    1
    1. scibot 01 Dec 2023
      RRID:SCR_000559

      DOI: 10.1158/0008-5472.can-23-1129

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    52.53.155.43/f18faff86a38ad159824c95dcf032e1a8bb0e968/133-html.html
  11. Nov 2023
  12. www.sciencedirect.com www.sciencedirect.com
    Unveiling the metal mutation nexus: Exploring the genomic impacts of heavy metal exposure in lung adenocarcinoma and colorectal cancer
    1
    1. scibot 04 Nov 2023
      RRID: SCR_000559

      DOI: 10.1016/j.jhazmat.2023.132590

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    sciencedirect.com/science/article/pii/S0304389423018733
  13. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Clinical and Molecular Features of Long-term Response to Immune Checkpoint Inhibitors in Patients with Advanced Non–Small Cell Lung Cancer
    1
    1. scibot 03 Nov 2023
      RRID:SCR_000559

      DOI: 10.1158/1078-0432.CCR-23-1207

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    ncbi.nlm.nih.gov/pmc/articles/PMC10618656/
  14. Oct 2023
  15. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Neoantigen targetability in progressive advanced melanoma
    1
    1. scibot 20 Oct 2023
      RRID:SCR_000559

      DOI: 10.1158/1078-0432.CCR-23-1106

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    ncbi.nlm.nih.gov/pmc/articles/PMC10570682/
  16. 52.53.155.43 52.53.155.43
    ccr-23-1106-html.html
    1
    1. scibot 07 Oct 2023
      RRID:SCR_000559

      DOI: 10.1158/1078-0432.ccr-23-1106

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    52.53.155.43/e699d5a890495f1b3d64be1323ae2437b422136a/ccr-23-1106-html.html
  17. Sep 2023
  18. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identifying mechanisms of resistance by circulating tumour DNA in EVOLVE, a Phase II Trial of Cediranib Plus Olaparib for Ovarian Cancer at time of PARP Inhibitor Progression
    1
    1. scibot 20 Sep 2023
      RRID:SCR_000559

      DOI: 10.1158/1078-0432.CCR-23-0797

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    ncbi.nlm.nih.gov/pmc/articles/PMC10502468/
  19. Aug 2023
  20. 52.53.155.43 52.53.155.43
    ccr-23-1106-html.html
    1
    1. scibot 12 Aug 2023
      RRID:SCR_000559

      DOI: 10.1158/1078-0432.ccr-23-1106

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    52.53.155.43/e699d5a890495f1b3d64be1323ae2437b422136a/ccr-23-1106-html.html
  21. www.sciencedirect.com www.sciencedirect.com
    Early clonal extinction in glioblastoma progression revealed by genetic barcoding
    1
    1. scibot 04 Aug 2023
      RRID:SCR_000559

      DOI: 10.1016/j.ccell.2023.07.001

      Resource: MuTect (RRID:SCR_000559)

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    sciencedirect.com/science/article/pii/S1535610823002416
  22. Jul 2023
  23. 52.53.155.43 52.53.155.43
    ccr-23-0797-html.html
    1
    1. scibot 08 Jul 2023
      RRID:SCR_000559

      DOI: 10.1158/1078-0432.ccr-23-0797

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    52.53.155.43/2c803156d89f9529c07ad3c21352a7e38912e0ae/ccr-23-0797-html.html
  24. Jun 2023
  25. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A platform for efficient establishment and drug-response profiling of high-grade serous ovarian cancer organoids
    1
    1. scibot 22 Jun 2023
      RRID:SCR_000559

      DOI: 10.1016/j.devcel.2023.04.012

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    ncbi.nlm.nih.gov/pmc/articles/PMC10281085/
  26. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic and Transcriptomic Analysis of Relapsed and Refractory Childhood Solid Tumors Reveals a Diverse Molecular Landscape and Mechanisms of Immune Evasion
    1
    1. scibot 08 Jun 2023
      RRID:SCR_000559

      DOI: 10.1158/0008-5472.CAN-21-1033

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    ncbi.nlm.nih.gov/pmc/articles/PMC10240575/
  27. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Clinical Efficacy and Whole Exome Sequencing of Liquid Biopsies in a Phase IB/II study of Bazedoxifene and Palbociclib in Advanced Hormone Receptor-Positive Breast Cancer
    1
    1. scibot 03 Jun 2023
      RRID:SCR_000559

      DOI: 10.1158/1078-0432.CCR-22-2305

      Resource: MuTect (RRID:SCR_000559)

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    ncbi.nlm.nih.gov/pmc/articles/PMC9722539/
  28. Feb 2023
  29. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A molecular phenotypic map of malignant pleural mesothelioma
    1
    1. scibot 02 Feb 2023
      RRID:SCR_000559

      DOI: 10.1093/gigascience/giac128

      Resource: MuTect (RRID:SCR_000559)

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    ncbi.nlm.nih.gov/pmc/articles/PMC9881451/
  30. Jan 2023
  31. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Cancer stem cells, not bulk tumor cells, determine mechanisms of resistance to SMO inhibitors
    1
    1. scibot 25 Jan 2023
      RRID:SCR_000559

      DOI: 10.1158/2767-9764.crc-22-0124

      Resource: MuTect (RRID:SCR_000559)

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    ncbi.nlm.nih.gov/pmc/articles/PMC9853917/
  32. Aug 2022
  33. 52.53.155.43 52.53.155.43
    ccr-22-0391-html.html
    1
    1. scibot 27 Aug 2022
      RRID:SCR_000559

      DOI: 10.1158/1078-0432.ccr-22-0391

      Resource: MuTect (RRID:SCR_000559)

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    52.53.155.43/c08a4046177ce3f856e78888ccc3cb92ddb344fb/ccr-22-0391-html.html
  34. Jul 2022
  35. www.sciencedirect.com www.sciencedirect.com
    Spatiotemporal genomic analysis reveals distinct molecular features in recurrent stage I non-small cell lung cancers
    1
    1. scibot 13 Jul 2022
      RRID:SCR_000559

      DOI: 10.1016/j.celrep.2022.111047

      Resource: MuTect (RRID:SCR_000559)

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    sciencedirect.com/science/article/pii/S2211124722008415
  36. Jun 2022
  37. aacrjournals.org aacrjournals.org
    Quantification of neoantigen-mediated immunoediting in cancer evolution
    1
    1. scibot 18 Jun 2022
      RRID:SCR_000559

      DOI: 10.1158/0008-5472.CAN-21-3717

      Resource: MuTect (RRID:SCR_000559)

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    aacrjournals.org/cancerres/article/82/12/2226/699353/Quantification-of-Neoantigen-Mediated
  38. aacrjournals.org aacrjournals.org
    Cancer Stem Cells, not Bulk Tumor Cells, Determine Mechanisms of Resistance to SMO Inhibitors
    1
    1. scibot 15 Jun 2022
      RRID:SCR_000559

      DOI: 10.1158/2767-9764.CRC-22-0124

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    aacrjournals.org/cancerrescommun/article/2/6/402/699311/Cancer-Stem-Cells-not-Bulk-Tumor-Cells-Determine
  39. aacrjournals.org aacrjournals.org
    Predictive markers of response to neoadjuvant durvalumab with nab-paclitaxel and dose dense doxorubicin/cyclophosphamide in basal-like triple negative breast cancer
    1
    1. scibot 14 Jun 2022
      RRID:SCR_000559

      DOI: 10.1158/1078-0432.CCR-21-3215

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    aacrjournals.org/clincancerres/article/28/12/2587/699273/Predictive-Markers-of-Response-to-Neoadjuvant
  40. Apr 2022
  41. aacrjournals.org aacrjournals.org
    Bone marrow surveillance of pediatric cancer survivors identifies clones that predict therapy-related leukemia
    1
    1. scibot 22 Apr 2022
      RRID:SCR_000559

      DOI: 10.1158/1078-0432.CCR-21-2451

      Resource: MuTect (RRID:SCR_000559)

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    aacrjournals.org/clincancerres/article/28/8/1614/694144/Bone-Marrow-Surveillance-of-Pediatric-Cancer
  42. Feb 2022
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-cell analysis of human glioma and immune cells identifies S100A4 as an immunotherapy target
    1
    1. scibot 17 Feb 2022
      RRID:SCR_000559

      DOI: 10.1038/s41467-022-28372-y

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    ncbi.nlm.nih.gov/pmc/articles/PMC8828877/
  44. Dec 2021
  45. www.sciencedirect.com www.sciencedirect.com
    Stage-stratified molecular profiling of non-muscle-invasive bladder cancer enhances biological, clinical, and therapeutic insight
    1
    1. scibot 22 Dec 2021
      RRID:SCR_000559

      DOI: 10.1016/j.xcrm.2021.100472

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    sciencedirect.com/science/article/pii/S266637912100344X
  46. Oct 2021
  47. clincancerres.aacrjournals.org clincancerres.aacrjournals.org
    Prediction of Immunotherapy Response in Melanoma through Combined Modeling of Neoantigen Burden and Immune-Related Resistance Mechanisms
    1
    1. scibot 01 Oct 2021
      RRID:SCR_000559

      DOI: 10.1158/1078-0432.CCR-20-4314

      Resource: MuTect (RRID:SCR_000559)

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    clincancerres.aacrjournals.org/content/27/15/4265
  48. Aug 2021
  49. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic characterization of de novo metastatic breast cancer
    1
    1. scibot 17 Aug 2021
      RRID:SCR_000559

      DOI: 10.1158/1078-0432.CCR-20-1720

      Resource: MuTect (RRID:SCR_000559)

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    ncbi.nlm.nih.gov/pmc/articles/PMC7887078/
  50. Jul 2021
  51. www.sciencedirect.com www.sciencedirect.com
    Loss of IFN-γ Pathway Genes in Tumor Cells as a Mechanism of Resistance to Anti-CTLA-4 Therapy
    2
    1. scibot 27 Jul 2021
      RRID: SCR_000559

      DOI: 10.1016/j.cell.2016.08.069

      Resource: MuTect (RRID:SCR_000559)

      Curator: @chewbeccax

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      RRIDCUR:Unrecognized RRID:SCR_000559
    2. scibot 27 Jul 2021
      SCR_000559

      DOI: 10.1016/j.cell.2016.08.069

      Resource: MuTect (RRID:SCR_000559)

      Curator: @gabimpine

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      RRID:SCR_000559 RRIDCUR:Validated
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    sciencedirect.com/science/article/pii/S0092867416311679
  52. www.sciencedirect.com www.sciencedirect.com
    Defining T Cell States Associated with Response to Checkpoint Immunotherapy in Melanoma
    1
    1. scibot 27 Jul 2021
      MuTect

      DOI: 10.1016/j.cell.2018.10.038

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    sciencedirect.com/science/article/pii/S0092867418313941
  53. Mar 2021
  54. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Global analysis of shared T cell specificities in human non-small cell lung cancer enables HLA inference and antigen discovery
    1
    1. scibot 21 Mar 2021
      RRID:SCR_000559

      DOI: 10.1016/j.immuni.2021.02.014

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      Curator: @evieth

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    ncbi.nlm.nih.gov/pmc/articles/PMC7960510/
  55. Sep 2020
  56. www.sciencedirect.com www.sciencedirect.com
    Senescence-Induced Vascular Remodeling Creates Therapeutic Vulnerabilities in Pancreas Cancer
    1
    1. scibot 23 Sep 2020
      RRID:SCR_000559

      DOI: 10.1016/j.cell.2020.03.008

      Resource: MuTect (RRID:SCR_000559)

      Curator: @ethanbadger

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    sciencedirect.com/science/article/pii/S0092867420302701
  57. Jan 2020
  58. www.sciencedirect.com www.sciencedirect.com
    A Patient-Derived Glioblastoma Organoid Model and Biobank Recapitulates Inter- and Intra-tumoral Heterogeneity
    1
    1. scibot 13 Jan 2020
      RRID:SCR_000559

      DOI: 10.1016/j.cell.2019.11.036

      Resource: MuTect (RRID:SCR_000559)

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      RRID:SCR_000559 RRIDCUR:Validated
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    sciencedirect.com/science/article/pii/S0092867419313212
  59. Nov 2018
  60. www.sciencedirect.com www.sciencedirect.com
    The Polyploid State Plays a Tumor-Suppressive Role in the Liver
    1
    1. scibot 05 Nov 2018
      Mutect

      Curator: @Jmenke

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    sciencedirect.com/science/article/pii/S1534580718300108
  61. www.sciencedirect.com www.sciencedirect.com
    Patient-Derived Xenografts for Prognostication and Personalized Treatment for Head and Neck Squamous Cell Carcinoma
    1
    1. scibot 05 Nov 2018
      Mutect

      Curator: @evieth

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      (MuTect, RRID:SCR_000559)

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      RRID:SCR_000559 RRIDCUR:Missing
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    sciencedirect.com/science/article/pii/S2211124718315675
  62. www.sciencedirect.com www.sciencedirect.com
    Proteomics, Post-translational Modifications, and Integrative Analyses Reveal Molecular Heterogeneity within Medulloblastoma Subgroups
    1
    1. scibot 05 Nov 2018
      RRID:SCR_000559

      Curator: @Jmenke

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    sciencedirect.com/science/article/pii/S1535610818303581
  63. www.sciencedirect.com www.sciencedirect.com
    Integrated Genomic Analysis of Hürthle Cell Cancer Reveals Oncogenic Drivers, Recurrent Mitochondrial Mutations, and Unique Chromosomal Landscapes
    1
    1. scibot 05 Nov 2018
      MuTect

      Curator: @Jmenke

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      (MuTect, RRID:SCR_000559)

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    sciencedirect.com/science/article/pii/S1535610818303076
  64. www.sciencedirect.com www.sciencedirect.com
    Characterization of BK Polyomaviruses from Kidney Transplant Recipients Suggests a Role for APOBEC3 in Driving In-Host Virus Evolution
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    1. scibot 05 Nov 2018
      RRID:SCR_000559

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    sciencedirect.com/science/article/pii/S1931312818302026
  65. www.sciencedirect.com www.sciencedirect.com
    Chemoresistance Evolution in Triple-Negative Breast Cancer Delineated by Single-Cell Sequencing
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    1. scibot 05 Nov 2018
      RRID:SCR_000559

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    sciencedirect.com/science/article/pii/S0092867418303659
  66. elifesciences.org elifesciences.org
    Untitled document
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      RRID:SCR_000559

      Curator: @evieth

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      RRID:SCR_000559 RRIDCUR:Validated
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    elifesciences.org/articles/31347
  67. elifesciences.org elifesciences.org
    Explosive mutation accumulation triggered by heterozygous human Pol ε proofreading-deficiency is driven by suppression of mismatch repair
    1
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      MuTect

      Curator: @evieth

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    elifesciences.org/articles/32692
  68. www.sciencedirect.com www.sciencedirect.com
    Genetic and Functional Drivers of Diffuse Large B Cell Lymphoma
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  69. Nov 2017
  70. www.sciencedirect.com www.sciencedirect.com
    Heterogeneous Tumor-Immune Microenvironments among Differentially Growing Metastases in an Ovarian Cancer Patient
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      MuTect

      Curator: @Jmenke

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  71. www.sciencedirect.com www.sciencedirect.com
    Stage-Specific Human Induced Pluripotent Stem Cells Map the Progression of Myeloid Transformation to Transplantable Leukemia
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      Mutect

      Curator: @kaitlinsung

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    sciencedirect.com/science/article/pii/S1934590917300310