77 Matching Annotations
  1. Oct 2025
  2. www.biorxiv.org www.biorxiv.org
    A de novo reference genome of the golden jackal, Canis aureus
    1
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    biorxiv.org/content/10.1101/2025.10.09.681322v2
  3. Aug 2025
  4. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Whole genome sequencing and assembly of the house sparrow, Passer domesticus
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12308067/
  5. Jun 2025
  6. gigabytejournal.com gigabytejournal.com
    A draft genome assembly for the dart-poison frog Phyllobates terribilis
    1
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    gigabytejournal.com/articles/157
  7. 52.53.155.43 52.53.155.43
    Chromosome-Level genome assembly and transcriptome analysis of the ural owl, Strix uralensis Pallas, 1771
    2
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    52.53.155.43/7dabfbbd9bff9fd118ed366d51d2c9d870afbb9e/PDF-html.html
  8. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of the lemon sole, Microstomus kitt (Pleuronectiformes: Pleuronectidae)
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12135936/
  9. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Chromosome-level genome assembly and methylome profile yield insights for the conservation of endangered loggerhead sea turtles
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12143204/
  10. May 2025
  11. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Efficiently constructing complete genomes with CycloneSEQ to fill gaps in bacterial draft assemblies
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12051259/
  12. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    A near telomere-to-telomere genome assembly of the Jinhua pig: enabling more accurate genetic research
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC12080228/
  13. Apr 2025
  14. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Genome assembly and annotation of Acropora pulchra from Mo’orea French Polynesia
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11985253/
  15. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Control of pili synthesis and putrescine homeostasis in Escherichia coli
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11968103/
  16. 52.53.155.43 52.53.155.43
    PDF-html.html
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    52.53.155.43/55258fb7cbb5129b8f6a80aa9ec7947c8b76a265/PDF-html.html
  17. Mar 2025
  18. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    A telomere-to-telomere phased genome of an octoploid strawberry reveals a receptor kinase conferring anthracnose resistance
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11899574/
  19. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Long-read metagenomic sequencing negates inferred loss of cytosine methylation in Myxosporea (Cnidaria: Myxozoa)
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11905887/
  20. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Draft genome of the endangered visayan spotted deer (Rusa alfredi), a Philippine endemic species
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11876970/
  21. Jan 2025
  22. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The genome of the sapphire damselfish Chrysiptera cyanea: a new resource to support further investigation of the evolution of Pomacentrids
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11711634/
  23. Dec 2024
  24. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Near telomere-to-telomere genome assembly of Mongolian cattle: implications for population genetic variation and beef quality
    1
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    pmc.ncbi.nlm.nih.gov/articles/PMC11653892/
  25. Sep 2024
  26. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Disentangling river and swamp buffalo genetic diversity: initial insights from the 1000 Buffalo Genomes Project
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11382405/
  27. Aug 2024
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome report: First reference genome of Vaccinium floribundum Kunth, an emblematic Andean species
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11304950/
  29. Jun 2024
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A haplotype-resolved chromosome-level assembly and annotation of European hazelnut (C. avellana cv. Jefferson) provides insight into mechanisms of eastern filbert blight resistance
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11152071/
  31. May 2024
  32. www.microbiologyresearch.org www.microbiologyresearch.org
    Psychrobacter raelei sp. nov., isolated from a dog with peritonitis
    1
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    microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.006353
  33. Apr 2024
  34. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Snakemake workflows for long-read bacterial genome assembly and evaluation
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC11000499/
  35. Mar 2024
  36. www.sciencedirect.com www.sciencedirect.com
    Chromosome level genome assembly and transcriptome analysis of E11 cells infected by tilapia lake virus
    1
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    sciencedirect.com/science/article/pii/S1050464824001499
  37. Jan 2024
  38. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Near chromosome-level and highly repetitive genome assembly of the snake pipefish Entelurus aequoreus (Syngnathiformes: Syngnathidae)
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10795108/
  39. Nov 2023
  40. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10673639/
  41. Oct 2023
  42. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Biosynthetic gene profiling and genomic potential of the novel photosynthetic marine bacterium Roseibaca domitiana
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10584327/
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome of the venomous snail Kalloconus canariensis: a valuable model for venomics and comparative genomics
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10541794/
  44. Sep 2023
  45. www.biorxiv.org www.biorxiv.org
    A haplotype-resolved chromosome-level assembly and annotation of European hazelnut (C. avellana cv. Jefferson) provides insight into mechanisms of eastern filbert blight resistance
    1
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    biorxiv.org/content/10.1101/2023.09.21.558899v1
  46. 52.53.155.43 52.53.155.43
    jkad214-html.html
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    52.53.155.43/3d9dadcff91e2baad90f130c0ca8d0eaf7826014/jkad214-html.html
  47. 52.53.155.43 52.53.155.43
    jkad203-html.html
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    52.53.155.43/213eef494e744243d5c25ee25ef9fbca7c526326/jkad203-html.html
  48. Aug 2023
  49. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Haplogenome assembly reveals structural variation in Eucalyptus interspecific hybrids
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10460159/
  50. Jul 2023
  51. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Salmonella gallinarum strains from outbreaks of fowl typhoid fever in Southern Africa closely related to SG9R vaccines
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10354334/
  52. May 2023
  53. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Crown Pearl V2: an improved genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758)
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10189783/
  54. Apr 2023
  55. academic.oup.com academic.oup.com
    GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
    1
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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad022/7111624
  56. academic.oup.com academic.oup.com
    A chromosome-scale high-contiguity genome assembly of the cheetah (Acinonyx jubatus)
    1
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    academic.oup.com/jhered/advance-article/doi/10.1093/jhered/esad015/7069302
  57. Mar 2023
  58. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Improvements to the Gulf pipefish Syngnathus scovelli genome
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10038202/
  59. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the deep-sea coral Lophelia pertusa
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC10022433/
  60. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of a benthic associated Syngnathiformes species: the common dragonet, Callionymus lyra
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9631949/
  61. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic Resources for the North American Water Vole (Microtus richardsoni) and the Montane Vole (Microtus montanus)
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9631978/
  62. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A genome assembly of the Atlantic chub mackerel (Scomber colias): a valuable teleost fishing resource
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9650269/
  63. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-quality draft genome for Melaleuca alternifolia (tea tree): a new platform for evolutionary genomics of myrtaceous terpene-rich species
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9650293/
  64. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Optimizing experimental design for genome sequencing and assembly with Oxford Nanopore Technologies
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9650304/
  65. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    First De novo whole genome sequencing and assembly of mutant Dendrobium hybrid cultivar ‘Emma White’
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9694038/
  66. 52.53.155.43 52.53.155.43
    A chromosome-scale reference genome assembly of the great sand eel, Hyperoplus lanceolatus
    1
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    52.53.155.43/c66fa9b2ea7c129831e4f3a5d878c6edc0d7a347/esad003-html.html
  67. Feb 2023
  68. www.sciencedirect.com www.sciencedirect.com
    A chromosome-level genome assembly of Ostrea denselamellosa provides initial insights into its evolution
    1
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    sciencedirect.com/science/article/pii/S0888754323000265
  69. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome and the identification of sex chromosomes in Uloborus diversus
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9912274/
  70. Jan 2023
  71. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic study and lipidomic bioassay of Leeuwenhoekiella parthenopeia: A novel rare biosphere marine bacterium that inhibits tumor cell viability
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9859067/
  72. Oct 2022
  73. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    BOA: A partitioned view of genome assembly
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9593263/
  74. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly for the Aldabra giant tortoise enables insights into the genetic health of a threatened population
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9553416/
  75. Sep 2022
  76. www.sciencedirect.com www.sciencedirect.com
    Genomic analysis reveals cryptic diversity in aphelids and sheds light on the emergence of Fungi
    1
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    sciencedirect.com/science/article/pii/S0960982222013938
  77. Jul 2022
  78. 52.53.155.43 52.53.155.43
    A chromosome-scale genome assembly of the okapi (Okapia johnstoni)
    1
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    52.53.155.43/ca38f07792210b0253061a6791db53fa681aee2f/esac033-html.html
  79. Jun 2022
  80. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9155146/
  81. May 2022
  82. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Global Phylogeny of Mycobacterium avium and Identification of Mutation Hotspots During Niche Adaptation
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC9121174/
  83. Apr 2022
  84. academic.oup.com academic.oup.com
    A high-quality, long-read genome assembly of the endangered ring-tailed lemur (Lemur catta)
    1
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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac026/6562532
  85. Mar 2022
  86. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The haplotype-resolved chromosome pairs of a heterozygous diploid African cassava cultivar reveal novel pan-genome and allele-specific transcriptome features
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC8952263/
  87. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Fully resolved assembly of Cryptosporidium parvum
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC8848321/
  88. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome size evolution in the diverse insect order Trichoptera
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    ncbi.nlm.nih.gov/pmc/articles/PMC8881205/
  89. Jan 2022
  90. academic.oup.com academic.oup.com
    Chromosome-level genome assembly of the shuttles hoppfish, Periophthalmus modestus
    1
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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giab089/6505119
  91. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Highly diverged lineages of Saccharomyces paradoxus in temperate to subtropical climate zones in China
    1
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    onlinelibrary.wiley.com/doi/10.1002/yea.3688
  92. Jul 2021
  93. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Major genetic discontinuity and novel toxigenic species in Clostridioides difficile taxonomy
    1
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    ncbi.nlm.nih.gov/pmc/articles/PMC8241443/
  94. Jun 2021
  95. academic.oup.com academic.oup.com
    The genome of the venomous snail Lautoconus ventricosus sheds light on the origin of conotoxin diversity
    1
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    academic.oup.com/gigascience/article/10/5/giab037/6284011
  96. May 2021
  97. www.sciencedirect.com www.sciencedirect.com
    Whole-genome analysis of giraffe supports four distinct species
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    sciencedirect.com/science/article/pii/S0960982221005467
  98. Mar 2021
  99. www.frontiersin.org www.frontiersin.org
    Comparative Genomics of Mycobacterium avium Subspecies Paratuberculosis Sheep Strains
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    frontiersin.org/article/10.3389/fvets.2021.637637/full
  100. academic.oup.com academic.oup.com
    Accurate Haplotype-Resolved Assembly Reveals The Origin Of Structural Variants For Human Trios
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    academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btab068/6128392
  101. Feb 2021
  102. academic.oup.com academic.oup.com
    The draft genome sequence of the grove snail Cepaea nemoralis
    1
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    academic.oup.com/g3journal/article-abstract/11/2/jkaa071/6080775
  103. academic.oup.com academic.oup.com
    Comparison of long-read methods for sequencing and assembly of a plant genome
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    academic.oup.com/gigascience/article/9/12/giaa146/6042729
  104. Jan 2021
  105. academic.oup.com academic.oup.com
    Chromosome-level reference genome of the European wasp spider Argiope bruennichi: a resource for studies on range expansion and evolutionary adaptation
    1
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    academic.oup.com/gigascience/article/10/1/giaa148/6067174
  106. Dec 2020
  107. academic.oup.com academic.oup.com
    Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore
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    academic.oup.com/gigascience/article/9/12/giaa123/6034784
  108. Nov 2020
  109. www.frontiersin.org www.frontiersin.org
    Employing MIC Data for Mink Pathogens to Propose Tentative Epidemiological Cut-Off Values: A Step Toward Rationalizing Antimicrobial Use in Mink
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    frontiersin.org/article/10.3389/fvets.2020.544594/full
  110. Sep 2020
  111. academic.oup.com academic.oup.com
    De novo genome assembly and Hi-C analysis reveal an association between chromatin architecture alterations and sex differentiation in the woody plant Jatropha curcas
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    academic.oup.com/gigascience/article/9/2/giaa009/5734639
  112. academic.oup.com academic.oup.com
    TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads
    1
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    academic.oup.com/gigascience/article/9/9/giaa094/5902284
  113. Jan 2020
  114. academic.oup.com academic.oup.com
    The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies
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    academic.oup.com/gigascience/article/9/1/giz160/5694103
  115. academic.oup.com academic.oup.com
    Common workflow language (CWL)-based software pipeline for de novo genome assembly from long- and short-read data
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    academic.oup.com/gigascience/article/8/4/giz014/5368071
  116. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    ncbi.nlm.nih.gov/pmc/articles/PMC6451199/
  117. Nov 2018
  118. academic.oup.com academic.oup.com
    Innovative assembly strategy contributes to understanding the evolution and conservation genetics of the endangered Solenodon paradoxus from the island of Hispaniola
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    academic.oup.com/gigascience/article/7/6/giy025/4931057
  119. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    ncbi.nlm.nih.gov/pmc/articles/PMC5747339/
  120. Nov 2017
  121. f1000research.com f1000research.com
    Untitled document
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    f1000research.com/articles/6-1691/v1