56 Matching Annotations
  1. Apr 2024
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Snakemake workflows for long-read bacterial genome assembly and evaluation
    1
    1. scibot 10 Apr 2024
      RRID:SCR_001228

      DOI: 10.46471/gigabyte.116

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    ncbi.nlm.nih.gov/pmc/articles/PMC11000499/
  3. Mar 2024
  4. www.sciencedirect.com www.sciencedirect.com
    Chromosome level genome assembly and transcriptome analysis of E11 cells infected by tilapia lake virus
    1
    1. scibot 27 Mar 2024
      RRID:SCR_001228

      DOI: 10.1016/j.fsi.2024.109505

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    sciencedirect.com/science/article/pii/S1050464824001499
  5. Jan 2024
  6. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Near chromosome-level and highly repetitive genome assembly of the snake pipefish Entelurus aequoreus (Syngnathiformes: Syngnathidae)
    1
    1. scibot 20 Jan 2024
      RRID:SCR_001228

      DOI: 10.46471/gigabyte.105

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    ncbi.nlm.nih.gov/pmc/articles/PMC10795108/
  7. Nov 2023
  8. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations
    1
    1. scibot 30 Nov 2023
      RRID:SCR_001228

      DOI: 10.1093/gigascience/giad100

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    ncbi.nlm.nih.gov/pmc/articles/PMC10673639/
  9. Oct 2023
  10. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Biosynthetic gene profiling and genomic potential of the novel photosynthetic marine bacterium Roseibaca domitiana
    1
    1. scibot 20 Oct 2023
      RRID:SCR_001228

      DOI: 10.3389/fmicb.2023.1238779

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    ncbi.nlm.nih.gov/pmc/articles/PMC10584327/
  11. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome of the venomous snail Kalloconus canariensis: a valuable model for venomics and comparative genomics
    1
    1. scibot 05 Oct 2023
      RRID:SCR_001228

      DOI: 10.1093/gigascience/giad075

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    ncbi.nlm.nih.gov/pmc/articles/PMC10541794/
  12. Sep 2023
  13. www.biorxiv.org www.biorxiv.org
    A haplotype-resolved chromosome-level assembly and annotation of European hazelnut (C. avellana cv. Jefferson) provides insight into mechanisms of eastern filbert blight resistance
    1
    1. scibot 30 Sep 2023
      RRID:SCR_001228

      DOI: 10.1101/2023.09.21.558899

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    biorxiv.org/content/10.1101/2023.09.21.558899v1
  14. 52.53.155.43 52.53.155.43
    jkad214-html.html
    1
    1. scibot 29 Sep 2023
      RRID:SCR_001228

      DOI: 10.1093/g3journal/jkad214

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    52.53.155.43/3d9dadcff91e2baad90f130c0ca8d0eaf7826014/jkad214-html.html
  15. 52.53.155.43 52.53.155.43
    jkad203-html.html
    1
    1. scibot 22 Sep 2023
      RRID:SCR_001228

      DOI: 10.1093/g3journal/jkad203

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    52.53.155.43/213eef494e744243d5c25ee25ef9fbca7c526326/jkad203-html.html
  16. Aug 2023
  17. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Haplogenome assembly reveals structural variation in Eucalyptus interspecific hybrids
    1
    1. scibot 29 Aug 2023
      RRID:SCR_001228

      DOI: 10.1093/gigascience/giad064

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    ncbi.nlm.nih.gov/pmc/articles/PMC10460159/
  18. Jul 2023
  19. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Salmonella gallinarum strains from outbreaks of fowl typhoid fever in Southern Africa closely related to SG9R vaccines
    1
    1. scibot 21 Jul 2023
      RRID:SCR_001228

      DOI: 10.3389/fvets.2023.1191497

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    ncbi.nlm.nih.gov/pmc/articles/PMC10354334/
  20. May 2023
  21. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Crown Pearl V2: an improved genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758)
    1
    1. scibot 21 May 2023
      RRID:SCR_001228

      DOI: 10.46471/gigabyte.81

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    ncbi.nlm.nih.gov/pmc/articles/PMC10189783/
  22. Apr 2023
  23. academic.oup.com academic.oup.com
    GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
    1
    1. scibot 11 Apr 2023
      RRID:SCR_001228

      DOI: 10.1093/gigascience/giad022

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad022/7111624
  24. academic.oup.com academic.oup.com
    A chromosome-scale high-contiguity genome assembly of the cheetah (Acinonyx jubatus)
    1
    1. scibot 06 Apr 2023
      RRID:SCR_001228

      DOI: 10.1093/jhered/esad015

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    academic.oup.com/jhered/advance-article/doi/10.1093/jhered/esad015/7069302
  25. Mar 2023
  26. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Improvements to the Gulf pipefish Syngnathus scovelli genome
    1
    1. scibot 29 Mar 2023
      RRID:SCR_001228

      DOI: 10.46471/gigabyte.76

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    ncbi.nlm.nih.gov/pmc/articles/PMC10038202/
  27. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the deep-sea coral Lophelia pertusa
    1
    1. scibot 22 Mar 2023
      RRID:SCR_001228

      DOI: 10.46471/gigabyte.78

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    ncbi.nlm.nih.gov/pmc/articles/PMC10022433/
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly of a benthic associated Syngnathiformes species: the common dragonet, Callionymus lyra
    1
    1. scibot 02 Mar 2023
      RRID:SCR_001228

      DOI: 10.46471/gigabyte.6

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    ncbi.nlm.nih.gov/pmc/articles/PMC9631949/
  29. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic Resources for the North American Water Vole (Microtus richardsoni) and the Montane Vole (Microtus montanus)
    1
    1. scibot 02 Mar 2023
      RRID:SCR_001228

      DOI: 10.46471/gigabyte.19

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    ncbi.nlm.nih.gov/pmc/articles/PMC9631978/
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A genome assembly of the Atlantic chub mackerel (Scomber colias): a valuable teleost fishing resource
    1
    1. scibot 02 Mar 2023
      RRID:SCR_001228

      DOI: 10.46471/gigabyte.40

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650269/
  31. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A high-quality draft genome for Melaleuca alternifolia (tea tree): a new platform for evolutionary genomics of myrtaceous terpene-rich species
    1
    1. scibot 02 Mar 2023
      RRID:SCR_001228

      DOI: 10.46471/gigabyte.28

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650293/
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Optimizing experimental design for genome sequencing and assembly with Oxford Nanopore Technologies
    1
    1. scibot 02 Mar 2023
      RRID:SCR_001228

      DOI: 10.46471/gigabyte.27

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650304/
  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    First De novo whole genome sequencing and assembly of mutant Dendrobium hybrid cultivar ‘Emma White’
    1
    1. scibot 02 Mar 2023
      RRID:SCR_001228

      DOI: 10.46471/gigabyte.66

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    ncbi.nlm.nih.gov/pmc/articles/PMC9694038/
  34. 52.53.155.43 52.53.155.43
    A chromosome-scale reference genome assembly of the great sand eel, Hyperoplus lanceolatus
    1
    1. scibot 02 Mar 2023
      RRID:SCR_001228

      DOI: 10.1093/jhered/esad003

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    52.53.155.43/c66fa9b2ea7c129831e4f3a5d878c6edc0d7a347/esad003-html.html
  35. Feb 2023
  36. www.sciencedirect.com www.sciencedirect.com
    A chromosome-level genome assembly of Ostrea denselamellosa provides initial insights into its evolution
    1
    1. scibot 16 Feb 2023
      RRID:SCR_001228

      DOI: 10.1016/j.ygeno.2023.110582

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    sciencedirect.com/science/article/pii/S0888754323000265
  37. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome and the identification of sex chromosomes in Uloborus diversus
    1
    1. scibot 16 Feb 2023
      RRID:SCR_001228

      DOI: 10.1093/gigascience/giad002

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    ncbi.nlm.nih.gov/pmc/articles/PMC9912274/
  38. Jan 2023
  39. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genomic study and lipidomic bioassay of Leeuwenhoekiella parthenopeia: A novel rare biosphere marine bacterium that inhibits tumor cell viability
    1
    1. scibot 25 Jan 2023
      RRID:SCR_001228

      DOI: 10.3389/fmicb.2022.1090197

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    ncbi.nlm.nih.gov/pmc/articles/PMC9859067/
  40. Oct 2022
  41. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    BOA: A partitioned view of genome assembly
    1
    1. scibot 27 Oct 2022
      RRID:SCR_001228

      DOI: 10.1016/j.isci.2022.105273

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    ncbi.nlm.nih.gov/pmc/articles/PMC9593263/
  42. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly for the Aldabra giant tortoise enables insights into the genetic health of a threatened population
    1
    1. scibot 26 Oct 2022
      RRID:SCR_001228

      DOI: 10.1093/gigascience/giac090

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    ncbi.nlm.nih.gov/pmc/articles/PMC9553416/
  43. Sep 2022
  44. www.sciencedirect.com www.sciencedirect.com
    Genomic analysis reveals cryptic diversity in aphelids and sheds light on the emergence of Fungi
    1
    1. scibot 20 Sep 2022
      RRID:SCR_001228

      DOI: 10.1016/j.cub.2022.08.071

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    sciencedirect.com/science/article/pii/S0960982222013938
  45. Jul 2022
  46. 52.53.155.43 52.53.155.43
    A chromosome-scale genome assembly of the okapi (Okapia johnstoni)
    1
    1. scibot 27 Jul 2022
      RRID:SCR_001228

      DOI: 10.1093/jhered/esac033

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    52.53.155.43/ca38f07792210b0253061a6791db53fa681aee2f/esac033-html.html
  47. Jun 2022
  48. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus
    1
    1. scibot 09 Jun 2022
      RRID:SCR_001228

      DOI: 10.1093/gigascience/giac039

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    ncbi.nlm.nih.gov/pmc/articles/PMC9155146/
  49. May 2022
  50. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Global Phylogeny of Mycobacterium avium and Identification of Mutation Hotspots During Niche Adaptation
    1
    1. scibot 24 May 2022
      RRID:SCR_001228

      DOI: 10.3389/fmicb.2022.892333

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    ncbi.nlm.nih.gov/pmc/articles/PMC9121174/
  51. Apr 2022
  52. academic.oup.com academic.oup.com
    A high-quality, long-read genome assembly of the endangered ring-tailed lemur (Lemur catta)
    1
    1. scibot 05 Apr 2022
      RRID:SCR_001228

      DOI: 10.1093/gigascience/giac026

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac026/6562532
  53. Mar 2022
  54. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The haplotype-resolved chromosome pairs of a heterozygous diploid African cassava cultivar reveal novel pan-genome and allele-specific transcriptome features
    1
    1. scibot 31 Mar 2022
      RRID:SCR_001228

      DOI: 10.1093/gigascience/giac028

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    ncbi.nlm.nih.gov/pmc/articles/PMC8952263/
  55. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Fully resolved assembly of Cryptosporidium parvum
    1
    1. scibot 04 Mar 2022
      RRID:SCR_001228

      DOI: 10.1093/gigascience/giac010

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    ncbi.nlm.nih.gov/pmc/articles/PMC8848321/
  56. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome size evolution in the diverse insect order Trichoptera
    1
    1. scibot 03 Mar 2022
      RRID:SCR_001228

      DOI: 10.1093/gigascience/giac011

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    ncbi.nlm.nih.gov/pmc/articles/PMC8881205/
  57. Jan 2022
  58. academic.oup.com academic.oup.com
    Chromosome-level genome assembly of the shuttles hoppfish, Periophthalmus modestus
    1
    1. scibot 15 Jan 2022
      RRID:SCR_001228

      DOI: 10.1093/gigascience/giab089

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giab089/6505119
  59. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Highly diverged lineages of Saccharomyces paradoxus in temperate to subtropical climate zones in China
    1
    1. scibot 12 Jan 2022
      RRID:SCR_001228

      DOI: 10.1002/yea.3688

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    onlinelibrary.wiley.com/doi/10.1002/yea.3688
  60. Jul 2021
  61. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Major genetic discontinuity and novel toxigenic species in Clostridioides difficile taxonomy
    1
    1. scibot 03 Jul 2021
      RRID:SCR_001228

      DOI: 10.7554/eLife.64325

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    ncbi.nlm.nih.gov/pmc/articles/PMC8241443/
  62. Jun 2021
  63. academic.oup.com academic.oup.com
    The genome of the venomous snail Lautoconus ventricosus sheds light on the origin of conotoxin diversity
    1
    1. scibot 02 Jun 2021
      RRID:SCR_001228

      DOI: 10.1093/gigascience/giab037

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    academic.oup.com/gigascience/article/10/5/giab037/6284011
  64. May 2021
  65. www.sciencedirect.com www.sciencedirect.com
    Whole-genome analysis of giraffe supports four distinct species
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    1. scibot 06 May 2021
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      DOI: 10.1016/j.cub.2021.04.033

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    sciencedirect.com/science/article/pii/S0960982221005467
  66. Mar 2021
  67. www.frontiersin.org www.frontiersin.org
    Comparative Genomics of Mycobacterium avium Subspecies Paratuberculosis Sheep Strains
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    1. scibot 03 Mar 2021
      RRID:SCR_001228

      DOI: 10.3389/fvets.2021.637637

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  68. academic.oup.com academic.oup.com
    Accurate Haplotype-Resolved Assembly Reveals The Origin Of Structural Variants For Human Trios
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      DOI: 10.1093/bioinformatics/btab068

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    academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btab068/6128392
  69. Feb 2021
  70. academic.oup.com academic.oup.com
    The draft genome sequence of the grove snail Cepaea nemoralis
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    1. scibot 28 Feb 2021
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      DOI: 10.1093/g3journal/jkaa071

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  71. academic.oup.com academic.oup.com
    Comparison of long-read methods for sequencing and assembly of a plant genome
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    1. scibot 27 Feb 2021
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      DOI: 10.1093/gigascience/giaa146

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    academic.oup.com/gigascience/article/9/12/giaa146/6042729
  72. Jan 2021
  73. academic.oup.com academic.oup.com
    Chromosome-level reference genome of the European wasp spider Argiope bruennichi: a resource for studies on range expansion and evolutionary adaptation
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    1. scibot 14 Jan 2021
      RRID:SCR_001228

      DOI: 10.1093/gigascience/giaa148

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    academic.oup.com/gigascience/article/10/1/giaa148/6067174
  74. Dec 2020
  75. academic.oup.com academic.oup.com
    Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore
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    1. scibot 19 Dec 2020
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      DOI: 10.1093/gigascience/giaa123

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  76. Nov 2020
  77. www.frontiersin.org www.frontiersin.org
    Employing MIC Data for Mink Pathogens to Propose Tentative Epidemiological Cut-Off Values: A Step Toward Rationalizing Antimicrobial Use in Mink
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      RRID:SCR_001228

      DOI: 10.3389/fvets.2020.544594

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  78. Sep 2020
  79. academic.oup.com academic.oup.com
    De novo genome assembly and Hi-C analysis reveal an association between chromatin architecture alterations and sex differentiation in the woody plant Jatropha curcas
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    1. scibot 17 Sep 2020
      RRID:SCR_001228

      DOI: 10.1093/gigascience/giaa009

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  80. academic.oup.com academic.oup.com
    TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads
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    1. scibot 12 Sep 2020
      RRID:SCR_001228

      DOI: 10.1093/gigascience/giaa094

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  81. Jan 2020
  82. academic.oup.com academic.oup.com
    The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies
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    1. scibot 13 Jan 2020
      RRID:SCR_001228

      DOI: 10.1093/gigascience/giz160

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  83. academic.oup.com academic.oup.com
    Common workflow language (CWL)-based software pipeline for de novo genome assembly from long- and short-read data
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    1. scibot 13 Jan 2020
      RRID:SCR_001228

      DOI: 10.1093/gigascience/giz014

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  84. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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      DOI: 10.1093/gigascience/giz014

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    ncbi.nlm.nih.gov/pmc/articles/PMC6451199/
  85. Nov 2018
  86. academic.oup.com academic.oup.com
    Innovative assembly strategy contributes to understanding the evolution and conservation genetics of the endangered Solenodon paradoxus from the island of Hispaniola
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    1. scibot 05 Nov 2018
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  87. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    ncbi.nlm.nih.gov/pmc/articles/PMC5747339/
  88. Nov 2017
  89. f1000research.com f1000research.com
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    f1000research.com/articles/6-1691/v1