59 Matching Annotations
  1. Dec 2024
  2. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Near telomere-to-telomere genome assembly of Mongolian cattle: implications for population genetic variation and beef quality
    1
    1. scibot 21 Dec 2024
      RRID:SCR_001235

      DOI: 10.1093/gigascience/giae099

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    pmc.ncbi.nlm.nih.gov/articles/PMC11653892/
  3. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    The chromosome-level genome assembly of an endangered herb Bergenia scopulosa provides insights into local adaptation and genomic vulnerability under climate change
    1
    1. scibot 21 Dec 2024
      RRID:SCR_001235

      DOI: 10.1093/gigascience/giae091

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    pmc.ncbi.nlm.nih.gov/articles/PMC11604060/
  4. www.sciencedirect.com www.sciencedirect.com
    Genomic insights into Neolithic founding paternal lineages around the Qinghai-Xizang Plateau using integrated YanHuang resource
    1
    1. scibot 14 Dec 2024
      RRID:SCR_001235

      DOI: 10.1016/j.isci.2024.111456

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    sciencedirect.com/science/article/pii/S258900422402683X
  5. Nov 2024
  6. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    CannSeek? Yes we Can! An open-source single nucleotide polymorphism database and analysis portal for Cannabis sativa
    1
    1. scibot 07 Nov 2024
      RRID:SCR_001235

      DOI: 10.46471/gigabyte.135

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    pmc.ncbi.nlm.nih.gov/articles/PMC11480739/
  7. Sep 2024
  8. academic.oup.com academic.oup.com
    Genomic insights into endangerment and conservation of the garlic-fruit tree (Malania oleifera), a plant species with extremely small populations
    1
    1. scibot 26 Sep 2024
      RRID:SCR_001235

      DOI: 10.1093/gigascience/giae070

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giae070/7765447
  9. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Whole-genome sequencing of the invasive golden apple snail Pomacea canaliculata from Asia reveals rapid expansion and adaptive evolution
    1
    1. scibot 26 Sep 2024
      RRID:SCR_001235

      DOI: 10.1093/gigascience/giae064

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    ncbi.nlm.nih.gov/pmc/articles/PMC11417965/
  10. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The selected genes NR6A1, RSAD2-CMPK2, and COL3A1 contribute to body size variation in Meishan pigs through different patterns
    1
    1. scibot 26 Sep 2024
      RRID:SCR_001235

      DOI: 10.1093/jas/skad304

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    ncbi.nlm.nih.gov/pmc/articles/PMC10548407/
  11. Jul 2024
  12. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosomal-level genome assembly and single-nucleotide polymorphism sites of black-faced spoonbill Platalea minor
    1
    1. scibot 31 Jul 2024
      RRID:SCR_001235

      DOI: 10.46471/gigabyte.130

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    ncbi.nlm.nih.gov/pmc/articles/PMC11273517/
  13. www.sciencedirect.com www.sciencedirect.com
    Evolutionary and biomedical implications of sex differences in the primate brain transcriptome
    1
    1. scibot 23 Jul 2024
      RRID:SCR_001235

      DOI: 10.1016/j.xgen.2024.100589

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    sciencedirect.com/science/article/pii/S2666979X24001733
  14. Mar 2024
  15. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptomic analysis using RNA sequencing and phenotypic analysis of Salmonella enterica after acid exposure for different time durations using adaptive laboratory evolution
    1
    1. scibot 17 Mar 2024
      RRID:SCR_001235

      DOI: 10.3389/fmicb.2024.1348063

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    ncbi.nlm.nih.gov/pmc/articles/PMC10929716/
  16. Jan 2024
  17. dx.doi.org dx.doi.org
    The chromosome-scale genome of Magnolia sinica (Magnoliaceae) provides insights into the conservation of plant species with extremely small populations (PSESP)
    1
    1. scibot 18 Jan 2024
      RRID:SCR_001235

      DOI: 10.1093/gigascience/giad110

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    dx.doi.org/10.1093/gigascience/giad110
  18. Dec 2023
  19. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Introgression of pigs in Taihu Lake region possibly contributed to the improvement of fertility in Danish Large White pigs
    1
    1. scibot 07 Dec 2023
      RRID:SCR_001235

      DOI: 10.1186/s12864-023-09860-x

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    ncbi.nlm.nih.gov/pmc/articles/PMC10694980/
  20. www.sciencedirect.com www.sciencedirect.com
    Genetic swamping of the critically endangered Scottish wildcat was recent and accelerated by disease
    1
    1. scibot 02 Dec 2023
      RRID:SCR_001235

      DOI: 10.1016/j.cub.2023.10.026

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    sciencedirect.com/science/article/pii/S0960982223014240
  21. Oct 2023
  22. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Construction and analysis of the chromosome-level haplotype-resolved genomes of two Crassostrea oyster congeners: Crassostrea angulata and Crassostrea gigas
    1
    1. scibot 05 Oct 2023
      RRID:SCR_001235

      DOI: 10.1093/gigascience/giad077

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    ncbi.nlm.nih.gov/pmc/articles/PMC10546077/
  23. Sep 2023
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Peeling back the layers of coral holobiont multi-omics data
    1
    1. scibot 09 Sep 2023
      RRID:SCR_001235

      DOI: 10.1016/j.isci.2023.107623

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    ncbi.nlm.nih.gov/pmc/articles/PMC10482995/
  25. www.sciencedirect.com www.sciencedirect.com
    Integration of eQTL and machine learning to dissect causal genes with pleiotropic effects in genetic regulation networks of seed cotton yield
    1
    1. scibot 08 Sep 2023
      RRID:SCR_001235

      DOI: 10.1016/j.celrep.2023.113111

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    sciencedirect.com/science/article/pii/S2211124723011221
  26. Aug 2023
  27. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome resequencing reveals independent domestication and breeding improvement of naked oat
    1
    1. scibot 03 Aug 2023
      RRID:SCR_001235

      DOI: 10.1093/gigascience/giad061

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    ncbi.nlm.nih.gov/pmc/articles/PMC10390318/
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome-Wide SNP and Indel Discovery in Abaca (Musa textilis Née) and among Other Musa spp. for Abaca Genetic Resources Management
    1
    1. scibot 01 Aug 2023
      RRID:SCR_001235

      DOI: 10.3390/cimb45070365

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    ncbi.nlm.nih.gov/pmc/articles/PMC10377871/
  29. May 2023
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A workflow reproducibility scale for automatic validation of biological interpretation results
    1
    1. scibot 09 May 2023
      RRID:SCR_001235

      DOI: 10.1093/gigascience/giad031

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    ncbi.nlm.nih.gov/pmc/articles/PMC10164546/
  31. Mar 2023
  32. academic.oup.com academic.oup.com
    Resequencing of a Pekin duck breeding population provides insights into the genomic response to short-term artificial selection
    1
    1. scibot 30 Mar 2023
      RRID:SCR_001235

      DOI: 10.1093/gigascience/giad016

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad016/7086661
  33. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genome assembly of the roundjaw bonefish (Albula glossodonta), a vulnerable circumtropical sportfish
    1
    1. scibot 29 Mar 2023
      RRID:SCR_001235

      DOI: 10.46471/gigabyte.44

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    ncbi.nlm.nih.gov/pmc/articles/PMC10038134/
  34. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A chromosome-scale draft genome sequence of horsegram (Macrotyloma uniflorum)
    1
    1. scibot 02 Mar 2023
      SCR_001235

      DOI: 10.46471/gigabyte.30

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650294/
  35. Nov 2022
  36. academic.oup.com academic.oup.com
    Selection signatures in goats reveal a novel deletion mutant underlying cashmere yield and diameter
    1
    1. scibot 08 Nov 2022
      RRID:SCR_001235

      DOI: 10.1093/gigascience/giac107

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac107/6795292
  37. Sep 2022
  38. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genetic Diversity and Selective Signature in Dabieshan Cattle Revealed by Whole-Genome Resequencing
    1
    1. scibot 24 Sep 2022
      RRID:SCR_001235

      DOI: 10.3390/biology11091327

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    ncbi.nlm.nih.gov/pmc/articles/PMC9495734/
  39. Jun 2022
  40. www.nature.com www.nature.com
    The first long-read nuclear genome assembly of Oryza australiensis, a wild rice from northern Australia
    1
    1. scibot 28 Jun 2022
      RRID:SCR_001235

      DOI: 10.1038/s41598-022-14893-5

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    nature.com/articles/s41598-022-14893-5
  41. Apr 2022
  42. www.sciencedirect.com www.sciencedirect.com
    A chromosome-level genome of the human blood fluke Schistosoma japonicum identifies the genomic basis of host-switching
    1
    1. scibot 07 Apr 2022
      RRID:SCR_001235

      DOI: 10.1016/j.celrep.2022.110638

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    sciencedirect.com/science/article/pii/S2211124722003904
  43. Nov 2021
  44. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A sex-specific evolutionary interaction between ADCY9 and CETP
    1
    1. scibot 19 Nov 2021
      RRID:SCR_001235

      DOI: 10.7554/eLife.69198

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    ncbi.nlm.nih.gov/pmc/articles/PMC8594919/
  45. Oct 2021
  46. www.sciencedirect.com www.sciencedirect.com
    Evolutionary history of the extinct Sardinian dhole
    1
    1. scibot 16 Oct 2021
      RRID:SCR_001235

      DOI: 10.1016/j.cub.2021.09.059

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    sciencedirect.com/science/article/pii/S0960982221013154
  47. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    OptM: estimating the optimal number of migration edges on population trees using Treemix
    1
    1. scibot 02 Oct 2021
      RRID:SCR_001235

      DOI: 10.1093/biomethods/bpab017

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    ncbi.nlm.nih.gov/pmc/articles/PMC8476930/
  48. Aug 2021
  49. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Gigwa v2—Extended and improved genotype investigator
    1
    1. scibot 13 Aug 2021
      RRID:SCR_001235

      DOI: 10.1093/gigascience/giz051

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    ncbi.nlm.nih.gov/pmc/articles/PMC6511067/
  50. www.sciencedirect.com www.sciencedirect.com
    Untitled document
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    1. scibot 02 Aug 2021
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      DOI: 10.1016/j.cub.2018.11.055

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    sciencedirect.com/science/article/pii/S0960982218315549
  51. Jul 2021
  52. elifesciences.org elifesciences.org
    Extensive intraspecies cryptic variation in an ancient embryonic gene regulatory network
    1
    1. scibot 30 Jul 2021
      vcftools

      DOI: 10.7554/eLife.48220

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    elifesciences.org/articles/48220
  53. genome.cshlp.org genome.cshlp.org
    A chromosome-scale assembly of the axolotl genome
    1
    1. scibot 29 Jul 2021
      VCFtools

      DOI: 10.1101/gr.241901.118

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    genome.cshlp.org/content/29/2/317.full
  54. elifesciences.org elifesciences.org
    Analysis of the genomic architecture of a complex trait locus in hypertensive rat models links Tmem63c to kidney damage
    1
    1. scibot 28 Jul 2021
      vcftools

      DOI: 10.7554/eLife.42068

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    elifesciences.org/articles/42068
  55. academic.oup.com academic.oup.com
    Sex-Biased Gene Expression and Dosage Compensation on the Artemia franciscana Z-Chromosome
    1
    1. scibot 28 Jul 2021
      VCFtools

      DOI: 10.1093/gbe/evz053

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    academic.oup.com/gbe/article/11/4/1033/5378701
  56. May 2021
  57. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Morphological and genomic shifts in mole-rat ‘queens’ increase fecundity but reduce skeletal integrity
    1
    1. scibot 13 May 2021
      RRID:SCR_001235

      DOI: 10.7554/eLife.65760

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    ncbi.nlm.nih.gov/pmc/articles/PMC8104968/
  58. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Nested association mapping reveals the genetic architecture of spike emergence and anthesis timing in intermediate wheatgrass
    1
    1. scibot 01 May 2021
      RRID:SCR_001235

      DOI: 10.1093/g3journal/jkab025

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    ncbi.nlm.nih.gov/pmc/articles/PMC8063084/
  59. Feb 2021
  60. elifesciences.org elifesciences.org
    Dyshomeostatic modulation of Ca2+-activated K+ channels in a human neuronal model of KCNQ2 encephalopathy
    1
    1. scibot 11 Feb 2021
      RRID:SCR_001235

      DOI: 10.7554/eLife.64434

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    elifesciences.org/articles/64434
  61. Sep 2020
  62. elifesciences.org elifesciences.org
    Temporal network analysis identifies early physiological and transcriptomic indicators of mild drought in Brassica rapa
    1
    1. scibot 26 Sep 2020
      RRID:SCR_001235

      DOI: 10.7554/eLife.29655

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    elifesciences.org/articles/29655
  63. academic.oup.com academic.oup.com
    Genomic analyses reveal distinct genetic architectures and selective pressures in buffaloes
    1
    1. scibot 26 Sep 2020
      RRID:SCR_001235

      DOI: 10.1093/gigascience/giz166

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    academic.oup.com/gigascience/article/9/2/giz166/5743106
  64. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Global genome diversity of the Leishmania donovani complex
    1
    1. scibot 17 Sep 2020
      RRID:SCR_001235

      DOI: 10.7554/eLife.51243

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  65. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning
    1
    1. scibot 16 Sep 2020
      RRID:SCR_001235

      DOI: 10.1093/gigascience/giaa088

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  66. Jan 2020
  67. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A haplotype-resolved draft genome of the European sardine (Sardina pilchardus)
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      RRID:SCR_001235

      DOI: 10.1093/gigascience/giz059

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  68. www.sciencedirect.com www.sciencedirect.com
    A Patient-Derived Glioblastoma Organoid Model and Biobank Recapitulates Inter- and Intra-tumoral Heterogeneity
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    1. scibot 13 Jan 2020
      RRID:SCR_001235

      DOI: 10.1016/j.cell.2019.11.036

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  69. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Human pancreatic cancer cell exosomes, but not human normal cell exosomes, act as an initiator in cell transformation
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    1. scibot 13 Jan 2020
      RRID:SCR_001235

      DOI: 10.7554/eLife.40226

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  70. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Conversion of random X-inactivation to imprinted X-inactivation by maternal PRC2
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    1. scibot 13 Jan 2020
      RRID:SCR_001235

      DOI: 10.7554/eLife.44258

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  71. academic.oup.com academic.oup.com
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      RRID:SCR_001235

      DOI: 10.1093/gigascience/giz051

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  72. Nov 2018
  73. academic.oup.com academic.oup.com
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  74. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  75. www.sciencedirect.com www.sciencedirect.com
    The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes
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    sciencedirect.com/science/article/pii/S0960982218307024
  76. academic.oup.com academic.oup.com
    Innovative assembly strategy contributes to understanding the evolution and conservation genetics of the endangered Solenodon paradoxus from the island of Hispaniola
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      RRID:SCR_001235

      Curator: @evieth

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  77. www.sciencedirect.com www.sciencedirect.com
    Bottlenose Dolphins Retain Individual Vocal Labels in Multi-level Alliances
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  78. academic.oup.com academic.oup.com
    Whole-genome resequencing reveals signatures of selection and timing of duck domestication
    1
    1. scibot 05 Nov 2018
      VCFtools

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  79. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  80. europepmc.org europepmc.org
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  81. Nov 2017
  82. www.sciencedirect.com www.sciencedirect.com
    The Discovery of Wild Date Palms in Oman Reveals a Complex Domestication History Involving Centers in the Middle East and Africa
    1
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      SCR_001235

      Curator: @chewbeccax

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  83. www.cell.com www.cell.com
    Mutation of the Human Circadian Clock Gene CRY1 in Familial Delayed Sleep Phase Disorder
    1
    1. scibot 08 Nov 2017
      VCFtools (version 0.1.11)

      Curator: @Zeljana_Babic

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  84. www.sciencedirect.com www.sciencedirect.com
    Mutation of the Human Circadian Clock Gene CRY1 in Familial Delayed Sleep Phase Disorder
    1
    1. scibot 08 Nov 2017
      VCFtools

      Curator: @gabimpine

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  85. www.sciencedirect.com www.sciencedirect.com
    Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts
    1
    1. scibot 08 Nov 2017
      SCR_001235

      Curator: @chewbeccax

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