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Mar 2026
www.biorxiv.org www.biorxiv.org

Cell-type specific impact of opioid use disorder and HIV on the human forebrain and cerebellum

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1. scibot 12 Mar 2026
  
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  RRID:SCR_002001
  
  DOI: 10.64898/2026.03.01.708876
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
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biorxiv.org/content/10.64898/2026.03.01.708876v1
Jan 2026
www.sciencedirect.com www.sciencedirect.com

Reactive oligodendrocytes promote glioblastoma progression through CCL5/CCR5-mediated glioma stem cell maintenance

1
1. scibot 22 Jan 2026
  
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  RRID:SCR_002001
  
  DOI: 10.1016/j.neuron.2025.12.012
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
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sciencedirect.com/science/article/pii/S0896627325009390
Nov 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Deciphering cell-type-and temporally specific matrisome expression signatures in human cortical development and neurodevelopmental disorders via scRNA-seq meta-analysis

1
1. scibot 14 Nov 2025
  
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  RRID:SCR_002001
  
  DOI: 10.1038/s41467-025-64381-3
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12606316/
Aug 2025
www.sciencedirect.com www.sciencedirect.com

Quantitative profiling of human brain organoid cell diversity across four protocols and multiple cell lines

1
1. scibot 27 Aug 2025
  
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  RRID:SCR_002001
  
  DOI: 10.1016/j.celrep.2025.116168
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
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sciencedirect.com/science/article/pii/S2211124725009398
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Spatial transcriptomics reveals human cortical layer and area specification

1
1. scibot 12 Aug 2025
  
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  RRID:SCR_002001
  
  DOI: 10.1038/s41586-025-09010-1
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12328223/
Jun 2025
www.cell.com www.cell.com

Exploring brain circuits, one cell type—or more— at a time

1
1. scibot 26 Jun 2025
  
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  RRID:SCR_002001
  
  DOI: 10.1016/j.neuron.2025.05.001
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
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cell.com/neuron/abstract/S0896-6273(25)00348-4
Mar 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Multi-omic Characterization of HIV Effects at Single Cell Level across Human Brain Regions

1
1. scibot 21 Mar 2025
  
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  RRID:SCR_002001
  
  DOI: 10.1101/2025.02.05.636707
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11839123/
Jan 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Cortical arealization of interneurons defines shared and distinct molecular programs in developing human and macaque brains

1
1. scibot 18 Jan 2025
  
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  RRID:SCR_002001
  
  DOI: 10.1038/s41467-025-56058-8
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
  Curator: @scibot
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11733295/
Dec 2024
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Rapid effects of valproic acid on the fetal brain transcriptome: implications for brain development and autism

1
1. scibot 11 Dec 2024
  
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  RRID:SCR_002001
  
  DOI: 10.1038/s41398-024-03179-1
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
  Curator: @scibot
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11618798/
May 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Improving replicability in single-cell RNA-Seq cell type discovery with Dune

1
1. scibot 30 May 2024
  
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  RRID:SCR_002001
  
  DOI: 10.1186/s12859-024-05814-6
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
  Curator: @scibot
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11127396/
Jan 2024
www.sciencedirect.com www.sciencedirect.com

Human fetal brain self-organizes into long-term expanding organoids

1
1. scibot 09 Jan 2024
  
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  RRID:SCR_002001
  
  DOI: 10.1016/j.cell.2023.12.012
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
  Curator: @scibot
  
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sciencedirect.com/science/article/pii/S0092867423013442
Dec 2023
www.nature.com www.nature.com

Molecularly defined and spatially resolved cell atlas of the whole mouse brain

1
1. scibot 14 Dec 2023
  
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  https://assets.nemoarchive.org/dat-qg7n1b0.
  
  DOI: 10.1038/s41586-023-06808-9
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
  Curator: @bandrow
  
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  RRID:SCR_002001 RRIDCUR:Missing
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nature.com/articles/s41586-023-06808-9
www.biorxiv.org www.biorxiv.org

Improving replicability in single-cell RNA-Seq cell type discovery with Dune

1
1. scibot 09 Dec 2023
  
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  SCR_002001
  
  DOI: 10.1101/2020.03.03.974220
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
  Curator: @scibot
  
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biorxiv.org/content/10.1101/2020.03.03.974220v2
www.biorxiv.org www.biorxiv.org

Epigenomic complexity of the human brain revealed by single-cell DNA methylomes and 3D genome structures

1
1. scibot 09 Dec 2023
  
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  RRID:SCR_002001
  
  DOI: 10.1101/2022.11.30.518285
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
  Curator: @scibot
  
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biorxiv.org/content/10.1101/2022.11.30.518285v1
Oct 2023
www.science.org www.science.org

Single Cell DNA Methylation and 3D Genome Architecture in the Human Brain

3
1. scibot 28 Oct 2023
  
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  RRID:SCR_002001
  
  DOI: 10.1126/science.adf5357
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
  Curator: @jmitrevska
  
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  RRID:SCR_002001
2. scibot 28 Oct 2023
  
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  RRID:SCR_002001
  
  DOI: 10.1126/science.adf5357
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
  Curator: @scibot
  
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  RRID:SCR_002001
3. scibot 18 Oct 2023
  
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  RRID:SCR_002001
  
  DOI: 10.1126/science.adf5357
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
  Curator: @scibot
  
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science.org/doi/10.1126/science.adf5357
www.science.org www.science.org

Molecular programs of regional specification and neural stem cell fate progression in macaque telencephalon

1
1. scibot 28 Oct 2023
  
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  RRID:SCR_002001
  
  DOI: 10.1126/science.adf3786
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
  Curator: @scibot
  
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science.org/doi/10.1126/science.adf3786
Apr 2023
www.science.org www.science.org

Molecular and cellular evolution of the primate dorsolateral prefrontal cortex

1
1. scibot 05 Apr 2023
  
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  RRID:SCR_002001
  
  DOI: 10.1126/science.abo7257
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
  Curator: @scibot
  
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science.org/doi/10.1126/science.abo7257
Dec 2022
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding

1
1. scibot 13 Dec 2022
  
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  RRID:SCR_002001
  
  DOI: 10.1038/s41467-022-35288-0
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
  Curator: @scibot
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9741613/
Jul 2022
onlinelibrary.wiley.com onlinelibrary.wiley.com

Evolutionary innovations of human cerebral cortex viewed through the lens of high-throughput sequencing

1
1. scibot 27 Jul 2022
  
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  RRID:SCR_002001
  
  DOI: 10.1002/dneu.22893
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
  Curator: @sophiastull
  
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onlinelibrary.wiley.com/doi/10.1002/dneu.22893
May 2022
onlinelibrary.wiley.com onlinelibrary.wiley.com

The spectrum of data sharing policies in neuroimaging data repositories

1
1. scibot 28 May 2022
  
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  (nemoarchive.org)
  
  DOI: 10.1002/hbm.25803
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
  Curator: @bandrow
  
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onlinelibrary.wiley.com/doi/full/10.1002/hbm.25803
www.biorxiv.org www.biorxiv.org

Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes

1
1. scibot 14 May 2022
  
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  RRID:SCR_002001
  
  DOI: 10.1101/2021.10.25.465795
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
  Curator: @scibot
  
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biorxiv.org/content/10.1101/2021.10.25.465795v1
www.biorxiv.org www.biorxiv.org

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

1
1. scibot 14 May 2022
  
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  RRID:SCR_002001
  
  DOI: 10.1101/2020.02.29.970558
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
  Curator: @scibot
  
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biorxiv.org/content/10.1101/2020.02.29.970558v2
Oct 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Graded heterogeneity of metabotropic signaling underlies a continuum of cell-intrinsic temporal responses in unipolar brush cells

1
1. scibot 28 Oct 2021
  
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  RRID:SCR_002001
  
  DOI: 10.1038/s41467-021-22893-8
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
  Curator: @scibot
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8497507/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

An atlas of cortical arealization identifies dynamic molecular signatures

1
1. scibot 21 Oct 2021
  
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  RRID:SCR_002001
  
  DOI: 10.1038/s41586-021-03910-8
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
  Curator: @scibot
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8494648/
Jul 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Interdisciplinary perspectives on the development, integration, and application of cognitive ontologies

1
1. scibot 27 Jul 2021
  
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  Neural Electromagnetic Ontologies
  
  DOI: 10.3389/fninf.2014.00062
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
  Curator: @gabimpine
  
  SciCrunch record: RRID:SCR_002001
  
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  RRIDCUR:Unrecognized RRID:SCR_002001
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ncbi.nlm.nih.gov/pmc/articles/PMC4064452/
Apr 2021
www.nature.com www.nature.com

Single-cell atlas of early human brain development highlights heterogeneity of human neuroepithelial cells and early radial glia

1
1. scibot 17 Apr 2021
  
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  RRID:SCR_002001
  
  DOI: 10.1038/s41593-020-00794-1
  
  Resource: Neural ElectroMagnetic Ontologies (NEMO) (RRID:SCR_002001)
  
  Curator: @evieth
  
  SciCrunch record: RRID:SCR_002001
  
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  RRIDCUR:Validated RRID:SCR_002001
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nature.com/articles/s41593-020-00794-1