57 Matching Annotations
  1. May 2024
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Tumor niche network-defined subtypes predict immunotherapy response of esophageal squamous cell cancer
    1
    1. scibot 15 May 2024
      RRID:SCR_002630

      DOI: 10.1016/j.isci.2024.109795

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    ncbi.nlm.nih.gov/pmc/articles/PMC11089351/
  3. Feb 2024
  4. aacrjournals.org aacrjournals.org
    Zoledronic acid add-on therapy for standard-risk Ewing sarcoma patients in the Ewing 2008R1 trial
    1
    1. scibot 24 Feb 2024
      RRID:SCR_002630

      DOI: 10.1158/1078-0432.CCR-23-1966

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    aacrjournals.org/clincancerres/article/29/24/5057/731658/Zoledronic-Acid-Add-on-Therapy-for-Standard-Risk
  5. link.springer.com link.springer.com
    The androgen receptor interacts with GATA3 to transcriptionally regulate a luminal epithelial cell phenotype in breast cancer
    1
    1. scibot 07 Feb 2024
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      DOI: 10.1186/s13059-023-03161-y

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    link.springer.com/article/10.1186/s13059-023-03161-y
  6. Jan 2024
  7. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Computational reproducibility of Jupyter notebooks from biomedical publications
    2
    1. scibot 14 Jan 2024
      RRID:SCR_002630

      DOI: 10.1093/gigascience/giad113

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    2. scibot 14 Jan 2024
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      DOI: 10.1093/gigascience/giad113

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    ncbi.nlm.nih.gov/pmc/articles/PMC10783158/
  8. Dec 2023
  9. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    From policy to practice: Lessons learned from an open science funding initiative
    1
    1. scibot 10 Dec 2023
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      DOI: 10.1371/journal.pcbi.1011626

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    ncbi.nlm.nih.gov/pmc/articles/PMC10703508/
  10. 52.53.155.43 52.53.155.43
    ccr-23-1966-html.html
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    1. scibot 01 Dec 2023
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      DOI: 10.1158/1078-0432.ccr-23-1966

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    52.53.155.43/893de8a6a69d9d19857939f965e6c50c9beedecf/ccr-23-1966-html.html
  11. May 2023
  12. www.sciencedirect.com www.sciencedirect.com
    Tumor biology and immune infiltration define primary liver cancer subsets linked to overall survival after immunotherapy
    1
    1. scibot 24 May 2023
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      DOI: 10.1016/j.xcrm.2023.101052

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    sciencedirect.com/science/article/pii/S2666379123001660
  13. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Patterns of Oncogene Coexpression at Single-Cell Resolution Influence Survival in Lymphoma
    1
    1. scibot 06 May 2023
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      DOI: 10.1158/2159-8290.CD-22-0998

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    ncbi.nlm.nih.gov/pmc/articles/PMC10157367/
  14. Apr 2023
  15. www.sciencedirect.com www.sciencedirect.com
    Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia
    4
    1. scibot 15 Apr 2023
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      DOI: 10.1016/j.celrep.2023.112373

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    2. scibot 15 Apr 2023
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      DOI: 10.1016/j.celrep.2023.112373

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    3. scibot 15 Apr 2023
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      DOI: 10.1016/j.celrep.2023.112373

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    4. scibot 15 Apr 2023
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      DOI: 10.1016/j.celrep.2023.112373

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    sciencedirect.com/science/article/pii/S2211124723003844
  16. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Structurally Complex Osteosarcoma Genomes Exhibit Limited Heterogeneity within Individual Tumors and across Evolutionary Time
    1
    1. scibot 14 Apr 2023
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      DOI: 10.1158/2767-9764.CRC-22-0348

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    ncbi.nlm.nih.gov/pmc/articles/PMC10093779/
  17. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transferred mitochondria accumulate reactive oxygen species, promoting proliferation
    1
    1. scibot 05 Apr 2023
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      DOI: 10.7554/eLife.85494

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    ncbi.nlm.nih.gov/pmc/articles/PMC10042539/
  18. Mar 2023
  19. link.springer.com link.springer.com
    Effect of Dataset Size and Medical Image Modality on Convolutional Neural Network Model Performance for Automated Segmentation: A CT and MR Renal Tumor Imaging Study
    1
    1. scibot 18 Mar 2023
      RRID:SCR_002630

      DOI: 10.1007/s10278-023-00804-1

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    link.springer.com/article/10.1007/s10278-023-00804-1
  20. Nov 2022
  21. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Persistence of hippocampal and striatal multivoxel patterns during awake rest after motor sequence learning
    1
    1. scibot 22 Nov 2022
      RRID:SCR_002630

      DOI: 10.1016/j.isci.2022.105498

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    ncbi.nlm.nih.gov/pmc/articles/PMC9672934/
  22. Sep 2022
  23. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Original research: Extracellular Vesicles from Pancreatic Cancer Stem Cells Lead an Intratumor Communication Network (EVNet) to fuel tumour progression
    1
    1. scibot 22 Sep 2022
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      DOI: 10.1136/gutjnl-2021-324994

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    ncbi.nlm.nih.gov/pmc/articles/PMC9271144/
  24. Apr 2022
  25. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    AP-2α and AP-2β cooperatively function in the craniofacial surface ectoderm to regulate chromatin and gene expression dynamics during facial development
    1
    1. scibot 27 Apr 2022
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      DOI: 10.7554/eLife.70511

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    ncbi.nlm.nih.gov/pmc/articles/PMC9038197/
  26. Mar 2022
  27. www.sciencedirect.com www.sciencedirect.com
    A weakened recurrent circuit in the hippocampus of Rett syndrome mice disrupts long-term memory representations
    1
    1. scibot 26 Mar 2022
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      DOI: 10.1016/j.neuron.2022.02.014

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    sciencedirect.com/science/article/pii/S0896627322001799
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Gut microbial trimethylamine is elevated in alcohol-associated hepatitis and contributes to ethanol-induced liver injury in mice
    1
    1. scibot 04 Mar 2022
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      DOI: 10.7554/eLife.76554

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    ncbi.nlm.nih.gov/pmc/articles/PMC8853661/
  29. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Paired Feed-Forward Excitation With Delayed Inhibition Allows High Frequency Computations Across Brain Regions
    1
    1. scibot 04 Mar 2022
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      DOI: 10.3389/fncir.2021.803065

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    ncbi.nlm.nih.gov/pmc/articles/PMC8862685/
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    NDI: A platform-independent data interface and database for neuroscience physiology and imaging experiments
    1
    1. scibot 04 Mar 2022
      RRID:SCR_002630

      DOI: 10.1523/ENEURO.0073-21.2022

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    ncbi.nlm.nih.gov/pmc/articles/PMC8874953/
  31. Nov 2021
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    LXR directly regulates glycosphingolipid synthesis and affects human CD4+ T cell function
    1
    1. scibot 19 Nov 2021
      RRID:SCR_002630

      DOI: 10.1073/pnas.2017394118

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    ncbi.nlm.nih.gov/pmc/articles/PMC8166169/
  33. Oct 2021
  34. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Optimization-based Eukaryotic Genetic Circuit Design (EuGeneCiD) and modeling (EuGeneCiM) tools: Computational approach to synthetic biology
    1
    1. scibot 08 Oct 2021
      RRID:SCR_002630

      DOI: 10.1016/j.isci.2021.103000

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    ncbi.nlm.nih.gov/pmc/articles/PMC8479143/
  35. Sep 2021
  36. www.sciencedirect.com www.sciencedirect.com
    Using EuGeneCiD and EuGeneCiM computational tools for synthetic biology
    1
    1. scibot 21 Sep 2021
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      DOI: 10.1016/j.xpro.2021.100820

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    sciencedirect.com/science/article/pii/S2666166721005268
  37. Aug 2021
  38. elifesciences.org elifesciences.org
    Untitled document
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    1. scibot 05 Aug 2021
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      DOI: 10.7554/eLife.20944

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    elifesciences.org/articles/20944
  39. Jul 2021
  40. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    1. scibot 31 Jul 2021
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      DOI: 10.7554/eLife.39279

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  41. Jun 2021
  42. elifesciences.org elifesciences.org
    Quantitative mapping of human hair greying and reversal in relation to life stress
    1
    1. scibot 26 Jun 2021
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      DOI: 10.7554/eLife.67437

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    elifesciences.org/articles/67437
  43. May 2021
  44. onlinelibrary.wiley.com onlinelibrary.wiley.com
    C-bouton components on rat extensor digitorum longus motoneurons are resistant to chronic functional overload
    1
    1. scibot 20 May 2021
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      DOI: 10.1111/joa.13439

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    onlinelibrary.wiley.com/doi/10.1111/joa.13439
  45. www.sciencedirect.com www.sciencedirect.com
    Curious Containers: A framework for computational reproducibility in life sciences with support for Deep Learning applications
    1
    1. scibot 06 May 2021
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      DOI: 10.1016/j.future.2020.05.007

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    sciencedirect.com/science/article/pii/S0167739X19318096
  46. Feb 2021
  47. elifesciences.org elifesciences.org
    Synaptic and intrinsic mechanisms underlying development of cortical direction selectivity
    1
    1. scibot 26 Feb 2021
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      DOI: 10.7554/eLife.58509

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  48. www.sciencedirect.com www.sciencedirect.com
    Decoding Natural Sounds in Early “Visual” Cortex of Congenitally Blind Individuals
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    1. scibot 25 Feb 2021
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      DOI: 10.1016/j.cub.2020.05.071

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    sciencedirect.com/science/article/pii/S0960982220307582
  49. www.sciencedirect.com www.sciencedirect.com
    Large, Stable Spikes Exhibit Differential Broadening in Excitatory and Inhibitory Neocortical Boutons
    1
    1. scibot 09 Feb 2021
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      DOI: 10.1016/j.celrep.2020.108612

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    sciencedirect.com/science/article/pii/S2211124720316016
  50. Jan 2021
  51. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Constitutive activation of cellular immunity underlies the evolution of resistance to infection in Drosophila
    1
    1. scibot 08 Jan 2021
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      DOI: 10.7554/eLife.59095

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    ncbi.nlm.nih.gov/pmc/articles/PMC7785293/
  52. Sep 2020
  53. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An early phase of instructive plasticity before the typical onset of sensory experience
    1
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      DOI: 10.1038/s41467-019-13872-1

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  54. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Efficient coding of natural scene statistics predicts discrimination thresholds for grayscale textures
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      DOI: 10.7554/eLife.54347

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  55. academic.oup.com academic.oup.com
    Earliest amyloid and tau deposition modulate the influence of limbic networks during closed-loop hippocampal downregulation
    1
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      DOI: 10.1093/brain/awaa011

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    academic.oup.com/brain/advance-article/doi/10.1093/brain/awaa011/5753887
  56. www.sciencedirect.com www.sciencedirect.com
    Protocol for Genome-Scale Reconstruction and Melanogenesis Analysis of Exophiala dermatitidis
    1
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      DOI: 10.1016/j.xpro.2020.100105

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  57. academic.oup.com academic.oup.com
    CandiMeth: Powerful yet simple visualization and quantification of DNA methylation at candidate genes
    1
    1. scibot 07 Sep 2020
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      DOI: 10.1093/gigascience/giaa066

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    academic.oup.com/gigascience/article/9/6/giaa066/5860739
  58. link.springer.com link.springer.com
    Axonal Tree Morphology and Signal Propagation Dynamics Improve Interneuron Classification
    1
    1. scibot 07 Sep 2020
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      DOI: 10.1007/s12021-020-09466-8

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    link.springer.com/article/10.1007/s12021-020-09466-8
  59. elifesciences.org elifesciences.org
    Synaptic and intrinsic mechanisms underlying development of cortical direction selectivity
    1
    1. scibot 03 Sep 2020
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      DOI: 10.7554/eLife.58509

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  60. Jan 2020
  61. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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      DOI: 10.7554/eLife.39279

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  62. www.sciencedirect.com www.sciencedirect.com
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    1
    1. scibot 12 Jan 2020
      RRID:SCR_002630

      DOI: 10.1016/j.neuroimage.2019.05.008

      Resource: GitHub (RRID:SCR_002630)

      Curator: @ethanbadger

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      RRID:SCR_002630 RRIDCUR:Validated
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    sciencedirect.com/science/article/pii/S105381191930391X
  63. Nov 2018
  64. link.springer.com link.springer.com
    Navigating Xenbase: An Integrated <Emphasis Type="Italic">Xenopus</Emphasis> Genomics and Gene Expression Database
    1
    1. scibot 05 Nov 2018
      GitHub

      Curator: @evieth

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      (GitHub, RRID:SCR_002630)

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    link.springer.com/protocol/10.1007/978-1-4939-7737-6_10
  65. academic.oup.com academic.oup.com
    Untitled document
    1
    1. scibot 05 Nov 2018
      RRID:SCR_002630

      Curator: @anp055

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      (GitHub, RRID:SCR_002630)

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    academic.oup.com/gigascience/article/5/suppl_1/s13742-016-0147-0-u/2965226
  66. www.sciencedirect.com www.sciencedirect.com
    A Nuclear Export Block Triggers the Decay of Newly Synthesized Polyadenylated RNA
    1
    1. scibot 05 Nov 2018
      GitHub

      Curator: @evieth

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      (GitHub, RRID:SCR_002630)

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    sciencedirect.com/science/article/pii/S2211124718312361
  67. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Immunocytochemical organization and sour taste activation in the rostral nucleus of the solitary tract of mice
    1
    1. scibot 05 Nov 2018
      SCR_002630

      Curator: @evieth

      Resource used:

      (GitHub, RRID:SCR_002630)

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    onlinelibrary.wiley.com/wol1/doi/10.1002/cne.24059/full
  68. Nov 2017
  69. academic.oup.com academic.oup.com
    The Neuroimaging Data Model (NIDM) API
    1
    1. scibot 08 Nov 2017
      SCR_002630

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      (GitHub, RRID:SCR_002630)

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    academic.oup.com/gigascience/article/5/suppl_1/23/2965226
  70. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Rules and mechanisms for efficient two-stage learning in neural circuits
    1
    1. scibot 08 Nov 2017
      SCR_002630

      Curator: @gabimpine

      Resource used:

      (GitHub, RRID:SCR_002630)

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    ncbi.nlm.nih.gov/pmc/articles/PMC5380437/
  71. www.sciencedirect.com www.sciencedirect.com
    Context- and Output Layer-Dependent Long-Term Ensemble Plasticity in a Sensory Circuit
    1
    1. scibot 08 Nov 2017
      Moco

      Curator: @kaitlinsung

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      (GitHub, RRID:SCR_002630)

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    sciencedirect.com/science/article/pii/S0896627317300909
  72. www.sciencedirect.com www.sciencedirect.com
    Mechanism of Substrate Translocation in an Alternating Access Transporter
    1
    1. scibot 08 Nov 2017
      RAPD

      Curator: @kaitlinsung

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      (GitHub, RRID:SCR_002630)

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    sciencedirect.com/science/article/pii/S0092867417302891
  73. www.sciencedirect.com www.sciencedirect.com
    MicroRNAs Establish Uniform Traits during the Architecture of Vertebrate Embryos
    1
    1. scibot 08 Nov 2017
      RNA-STAR aligners

      Curator: @kaitlinsung

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      (GitHub, RRID:SCR_002630)

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    sciencedirect.com/science/article/pii/S153458071730117X
  74. www.sciencedirect.com www.sciencedirect.com
    Stage-Specific Human Induced Pluripotent Stem Cells Map the Progression of Myeloid Transformation to Transplantable Leukemia
    1
    1. scibot 08 Nov 2017
      STAR alignment tool

      Curator: @kaitlinsung

      Resource used:

      (GitHub, RRID:SCR_002630)

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    sciencedirect.com/science/article/pii/S1934590917300310
  75. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Experiment Factory: Standardizing Behavioral Experiments
    1
    1. scibot 08 Nov 2017
      SCR_002630

      Curator: @chewbeccax

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      (GitHub, RRID:SCR_002630)

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    ncbi.nlm.nih.gov/pmc/articles/PMC4844768/
  76. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    2015 Brainhack Proceedings
    1
    1. scibot 08 Nov 2017
      SCR_002630

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      (GitHub, RRID:SCR_002630)

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    ncbi.nlm.nih.gov/pmc/articles/PMC5103253/
  77. link.springer.com link.springer.com
    Quantitative Arbor Analytics: Unsupervised Harmonic Co-Clustering of Populations of Brain Cell Arbors Based on L-Measure - Springer
    1
    1. scibot 08 Nov 2017
      GITHUB

      Curator: @jcabotaj

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      (GitHub, RRID:SCR_002630)

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    link.springer.com/article/10.1007/s12021-014-9237-2/fulltext.html