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113 Matching Annotations

Mar 2026
54.241.53.176 54.241.53.176

1-s2.0-S2589004226006188-main-html.html

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1. scibot 06 Mar 2026
  
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  RRID:SCR_003302
  
  DOI: 10.1016/j.isci.2026.115243
  
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54.241.53.176/0bda0410859d180544ef1478de34a7e54f282e4a/1-s2.0-S2589004226006188-main-html.html
Jan 2026
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Early transcriptomic perturbations highlight the spinal cord as a key pathogenic region in spinocerebellar ataxia type 3

1
1. scibot 30 Jan 2026
  
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  RRID:SCR_003302
  
  DOI: 10.3389/fncel.2025.1735225
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12846992/
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Dissociation of the mTOR Protein Interaction Network Following Neuronal Activation Is Altered by Shank3 Mutation

1
1. scibot 22 Jan 2026
  
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  RRID:SCR_003302
  
  DOI: 10.1111/jnc.70353
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12802388/
Dec 2025
54.241.53.176 54.241.53.176

2025.12.03.691098.full-html.html

1
1. scibot 16 Dec 2025
  
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  RRID:SCR_003302
  
  DOI: 10.64898/2025.12.03.691098
  
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54.241.53.176/a14999d788478dac1395f9a023b690b5f769408a/2025.12.03.691098.full-html.html
Oct 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Cancer-associated fibroblasts expressing FSTL3 promote vasculogenic mimicry formation and drive colon cancer malignancy

1
1. scibot 17 Oct 2025
  
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  RRID:SCR_003302
  
  DOI: 10.1038/s41419-025-08009-w
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12501291/
www.biorxiv.org www.biorxiv.org

Unveiling the temporal impact: Exploring dynamic changes in the paediatric solid tumour immune microenvironment through time

1
1. scibot 14 Oct 2025
  
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  RRID:SCR_003302
  
  DOI: 10.1101/2025.10.07.680325
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
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biorxiv.org/content/10.1101/2025.10.07.680325v1
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Integrative machine learning and transcriptomic analysis identifies key molecular targets in MNPN-associated oral squamous cell carcinoma pathogenesis

1
1. scibot 11 Oct 2025
  
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  RRID:SCR_003302
  
  DOI: 10.3389/fbinf.2025.1664576
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12508658/
Sep 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Genetic parallels in biomineralization of the calcareous sponge Sycon ciliatum and stony corals

1
1. scibot 11 Sep 2025
  
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  RRID:SCR_003302
  
  DOI: 10.7554/eLife.106239
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12419799/
www.mdpi.com www.mdpi.com

Deciphering the Heterogeneity of Pancreatic Cancer: DNA Methylation-Based Cell Type Deconvolution Unveils Distinct Subgroups and Immune Landscapes

1
1. scibot 10 Sep 2025
  
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  RRID:SCR_003302
  
  DOI: 10.3390/epigenomes9030034
  
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mdpi.com/2075-4655/9/3/34
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Parp7 generates an ADP-ribosyl degron that controls negative feedback of androgen signaling

1
1. scibot 06 Sep 2025
  
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  RRID:SCR_003302
  
  DOI: 10.1038/s44318-025-00510-4
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12402299/
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Potential role of immune-related LncRNAs in prognosis of hepatocellular carcinoma: an integrative study

1
1. scibot 05 Sep 2025
  
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  RRID:SCR_003302
  
  DOI: 10.1007/s12672-025-03497-w
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12399479/
Aug 2025
febs.onlinelibrary.wiley.com febs.onlinelibrary.wiley.com

FEBS Press

1
1. scibot 14 Aug 2025
  
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  RRID:SCR_003302
  
  DOI: 10.1002/1878-0261.70107
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
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febs.onlinelibrary.wiley.com/doi/full/10.1002/1878-0261.70107
Jul 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Human gut microbiome gene co-expression network reveals a loss in taxonomic and functional diversity in Parkinson’s disease

1
1. scibot 30 Jul 2025
  
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  RRID:SCR_003302
  
  DOI: 10.1038/s41522-025-00780-0
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12289924/
May 2025
www.sciencedirect.com www.sciencedirect.com

Enhanced B cell and complement cascade gene signatures in patients with neuropsychiatric systemic lupus erythematosus

1
1. scibot 16 May 2025
  
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  RRID:SCR_003302
  
  DOI: 10.1016/j.ard.2025.04.006
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
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sciencedirect.com/science/article/pii/S0003496725008933
Mar 2025
www.nature.com www.nature.com

Comparative analysis of Parkinson’s and inflammatory bowel disease gut microbiomes reveals shared butyrate-producing bacteria depletion

1
1. scibot 23 Mar 2025
  
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  RRID:SCR_003302
  
  DOI: 10.1038/s41531-025-00894-4
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
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nature.com/articles/s41531-025-00894-4
Feb 2025
www.sciencedirect.com www.sciencedirect.com

Systems immunology analysis of human immune organoids identifies host-specific correlates of protection to different influenza vaccines

1
1. scibot 25 Feb 2025
  
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  RRID:SCR_003302
  
  DOI: 10.1016/j.stem.2025.01.014
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
  Curator: @scibot
  
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sciencedirect.com/science/article/pii/S1934590925000141
www.sciencedirect.com www.sciencedirect.com

Distinct mismatch-repair complex genes set neuronal CAG-repeat expansion rate to drive selective pathogenesis in HD mice

1
1. scibot 13 Feb 2025
  
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  RRID:SCR_003302
  
  DOI: 10.1016/j.cell.2025.01.031
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
  Curator: @scibot
  
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sciencedirect.com/science/article/pii/S009286742500100X
www.sciencedirect.com www.sciencedirect.com

Using multiomic integration to improve blood biomarkers of major depressive disorder: a case-control study

1
1. scibot 06 Feb 2025
  
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  RRID:SCR_003302
  
  DOI: 10.1016/j.ebiom.2025.105569
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
  Curator: @scibot
  
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sciencedirect.com/science/article/pii/S2352396425000131
Dec 2024
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Dual gene set enrichment analysis (dualGSEA); an R function that enables more robust biological discovery and pre-clinical model alignment from transcriptomics data

1
1. scibot 11 Dec 2024
  
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  RRID:SCR_003302
  
  DOI: 10.1038/s41598-024-80534-8
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11618328/
Nov 2024
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Building a community-driven bioinformatics platform to facilitate Cannabis sativa multi-omics research

1
1. scibot 07 Nov 2024
  
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  RRID:SCR_003302
  
  DOI: 10.46471/gigabyte.137
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11515022/
Sep 2024
www.biorxiv.org www.biorxiv.org

A Comprehensive Proteogenomic and Spatial Analysis of Innate and Acquired Resistance of Metastatic Melanoma to Immune Checkpoint Blockade Therapies

1
1. scibot 29 Sep 2024
  
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  RRID:SCR_003302
  
  DOI: 10.1101/2024.09.12.612675
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
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biorxiv.org/content/10.1101/2024.09.12.612675v1
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Disentangling the riddle of systemic lupus erythematosus with antiphospholipid syndrome: blood transcriptome analysis reveals a less-pronounced IFN-signature and distinct molecular profiles in venous versus arterial events

1
1. scibot 26 Sep 2024
  
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  RRID:SCR_003302
  
  DOI: 10.1136/ard-2024-225664
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11420729/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The Proteogenomics of Prostate Cancer Radioresistance

1
1. scibot 25 Sep 2024
  
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  RRID:SCR_003302
  
  DOI: 10.1158/2767-9764.CRC-24-0292
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11411600/
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The Role of MFN2 in Regulating Endothelial Cell Senescence: Implications for Vascular Aging

1
1. scibot 25 Sep 2024
  
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  RRID:SCR_003302
  
  DOI: 10.1016/j.isci.2024.110809
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
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sciencedirect.com/science/article/pii/S2589004224020340
link.springer.com link.springer.com

Significance of tumor mutation burden combined with immune infiltrates in the progression and prognosis of ovarian cancer

1
1. scibot 25 Sep 2024
  
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  RRID:SCR_003302
  
  DOI: 10.1186/s12935-020-01472-9
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
  Curator: @Naa003
  
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  RRID:SCR_003302 RRID:SCR_001905 RRIDCUR:Incorrect
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link.springer.com/article/10.1186/s12935-020-01472-9
Aug 2024
www.tandfonline.com www.tandfonline.com

Drought-induced molecular changes in crown of various barley phytohormone mutants

1
1. scibot 18 Aug 2024
  
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  RRID:SCR_003302
  
  DOI: 10.1080/15592324.2024.2371693
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
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tandfonline.com/doi/abs/10.1080/15592324.2024.2371693
Jul 2024
www.sciencedirect.com www.sciencedirect.com

Analyzing embryo dormancy at single-cell resolution reveals dynamic transcriptional responses and activation of integrin-Yap/Taz prosurvival signaling

1
1. scibot 25 Jul 2024
  
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  RRID:SCR_003302
  
  DOI: 10.1016/j.stem.2024.06.015
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
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sciencedirect.com/science/article/pii/S1934590924002509
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Drought-induced molecular changes in crown of various barley phytohormone mutants

1
1. scibot 02 Jul 2024
  
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  RRID:SCR_003302
  
  DOI: 10.1080/15592324.2024.2371693
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
  Curator: @scibot
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11210921/
Jun 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The telomere-to-telomere (T2T) genome of Peucedanum praeruptorum Dunn provides insights into the genome evolution and coumarin biosynthesis

1
1. scibot 08 Jun 2024
  
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  RRID:SCR_003302
  
  DOI: 10.1093/gigascience/giae025
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11152176/
May 2024
www.biorxiv.org www.biorxiv.org

Evaluation of Gene Set Enrichment Analysis (GSEA) tools highlights the value of single sample approaches over pairwise for robust biological discovery

1
1. scibot 29 May 2024
  
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  RRID:SCR_003302
  
  DOI: 10.1101/2024.03.15.585228
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
  Curator: @abever99
  
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  DOI:10.1101/2024.03.15.585228 RRID:SCR_003302
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DOI:10.1101/2024.03.15.585228

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biorxiv.org/content/10.1101/2024.03.15.585228v1
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Novel Spirocyclic Dimer, SpiD3, Targets Chronic Lymphocytic Leukemia Survival Pathways with Potent Preclinical Effects

1
1. scibot 24 May 2024
  
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  RRID:SCR_003302
  
  DOI: 10.1158/2767-9764.CRC-24-0071
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
  Curator: @scibot
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11110724/
www.sciencedirect.com www.sciencedirect.com

Phenotypic and spatial heterogeneity of brain myeloid cells after stroke is associated with cell ontogeny, tissue damage, and brain connectivity

1
1. scibot 21 May 2024
  
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  RRID:SCR_003302
  
  DOI: 10.1016/j.celrep.2024.114250
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
  Curator: @scibot
  
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sciencedirect.com/science/article/pii/S2211124724005783
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Transcriptional profiles associated with coronary artery disease in type 2 diabetes mellitus

1
1. scibot 08 May 2024
  
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  SCR_003302
  
  DOI: 10.3389/fendo.2024.1323168
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11066158/
Apr 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Mapping brain gene coexpression in daytime transcriptomes unveils diurnal molecular networks and deciphers perturbation gene signatures

1
1. scibot 11 Apr 2024
  
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  RRID:SCR_003302
  
  DOI: 10.1016/j.neuron.2022.09.028
  
  Resource: Weighted Gene Co-expression Network Analysis (RRID:SCR_003302)
  
  Curator: @scibot
  
  SciCrunch record: RRID:SCR_003302
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9665885/
Mar 2024
www.mdpi.com www.mdpi.com

The Chronic Effects of a Single Low-Intensity Blast Exposure on Phosphoproteome Networks and Cognitive Function Influenced by Mutant Tau Overexpression

1
1. scibot 19 Mar 2024
  
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HIV-2 MEDIATED EFFECTS ON TARGET AND BYSTANDER CELLS INDUCE PLASMA PROTEOME REMODELLING

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Feb 2024
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The Immunogenomic Landscape of Neuroendocrine Prostate Cancer

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A new genomic framework to categorize pediatric acute myeloid leukemia

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Abnormal functional connectivity within the prefrontal cortex is associated with multiple plasma lipid species in major depressive disorder

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Pharmacogenomic Analysis of Combined Therapies against Glioblastoma Based on Cell Markers from Single-Cell Sequencing

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Precision Medicine and Complex Disease: Blood pressure and the kidney cortex transcriptome response to high-sodium diet challenge in female nonhuman primates

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Oct 2023
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Prenatal alcohol alters inflammatory signatures in enteric portal tissues following adult-onset cerebrovascular ischemic stroke

1
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Network analysis identifies strain-dependent response to tau and tau seeding-associated genes

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Gene expression genetics of the striatum of Diversity Outbred mice

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Proteomic analysis of the human hippocampus identifies neuronal pentraxin 1 (NPTX1) as synapto-axonal target in late-stage Parkinson's disease

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Jul 2023
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A network-based approach reveals long non-coding RNAs associated with disease activity in lupus nephritis: key pathways for flare and potential biomarkers to be used as liquid biopsies

1
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Jun 2023
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hdWGCNA identifies co-expression networks in high-dimensional transcriptomics data

1
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Gene expression genetics of the striatum of Diversity Outbred mice

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Transcriptome network analysis implicates CX3CR1-positive type 3 dendritic cells in non-infectious uveitis

1
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An in vivo neuroimmune organoid model to study human microglia phenotypes

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Genes critical for development and differentiation of dopaminergic neurons are downregulated in Parkinson’s disease

1
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Transcriptome profiling disclosed the effect of single and combined drought and heat stress on reprogramming of genes expression in barley flag leaf

1
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Nov 2022
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Identification and Application of a Novel Immune-Related lncRNA Signature on the Prognosis and Immunotherapy for Lung Adenocarcinoma

1
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Single-cell RNA sequencing reveals different signatures of mesenchymal stromal cell pluripotent-like and multipotent populations

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Oct 2022
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Mapping brain gene coexpression in daytime transcriptomes unveils diurnal molecular networks and deciphers perturbation gene signatures

1
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Sep 2022
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Biological misinterpretation of transcriptional signatures in tumor samples can unknowingly undermine mechanistic understanding and faithful alignment with preclinical data

1
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Combined – whole blood and skin fibroblasts- transcriptomic analysis in Psoriatic Arthritis reveals molecular signatures of activity, resistance and early response to treatment

1
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A combination of neuroimaging and plasma metabolomic analysis suggests inflammation is associated with white matter structural connectivity in major depressive disorder

1
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Interrogation of T Cell-Enriched Tumors Reveals Prognostic and Immunotherapeutic Implications of Polyamine Metabolism

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Aug 2022
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LncRNA and mRNA expression profiles in brown adipose tissue of obesity-prone and obesity-resistant mice

1
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Absence of microglia promotes diverse pathologies and early lethality in Alzheimer’s disease mice

1
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A Whole Transcriptome Analysis in Peripheral Blood Suggests That Energy Metabolism and Inflammation Are Involved in Major Depressive Disorder

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May 2022
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Regionally defined proteomic profiles of human cerebral tissue and organoids reveal conserved molecular modules of neurodevelopment

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Isolation disrupts social interactions and destabilizes brain development in bumblebees

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Apr 2022
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A conditional gene-based association framework integrating isoform-level eQTL data reveals new susceptibility genes for schizophrenia

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ncbi.nlm.nih.gov/pmc/articles/PMC9005191/
Mar 2022
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Human pancreatic islet miRNA-mRNA networks of altered miRNAs due to glycaemic status

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Feb 2022
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Uninterrupted CAG repeat drives striatum-selective transcriptionopathy and nuclear pathogenesis in human Huntingtin BAC mice

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  DOI: 10.1016/j.neuron.2022.01.006
  
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Multi-Omics Profiling Suggesting Intratumoral Mast Cells as Predictive Index of Breast Cancer Lung Metastasis

1
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  DOI: 10.3389/fonc.2021.788778
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8801492/
Dec 2021
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Wnt signaling mediates acquisition of blood–brain barrier properties in naïve endothelium derived from human pluripotent stem cells

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Epigenome-wide analysis of DNA methylation and coronary heart disease: a nested case-control study

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Pan-cancer analysis combined with experiments predicts CTHRC1 as a therapeutic target for human cancers

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Subventricular zone/white matter microglia reconstitute the empty adult microglial niche in a dynamic wave

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Uncoupling of gene expression from copy number presents therapeutic opportunities in aneuploid cancers

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Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease

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Inducible and reversible phenotypes in a novel mouse model of Friedreich's Ataxia.

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Follicular lymphoma triggers phenotypic and functional remodeling of the human lymphoid stromal cell landscape

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As above, so below: Whole transcriptome profiling demonstrates strong molecular similarities between avian dorsal and ventral pallial subdivisions

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Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation

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Distinct Transcriptional Responses across Tissue-Resident Macrophages to Short-Term and Long-Term Metabolic Challenge

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The leukocyte non-coding RNA landscape in critically ill patients with sepsis

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16p11.2 microdeletion imparts transcriptional alterations in human iPSC-derived models of early neural development

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De novo genome assembly and Hi-C analysis reveal an association between chromatin architecture alterations and sex differentiation in the woody plant Jatropha curcas

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Postprandial Hypoglycemia in Patients after Gastric Bypass Surgery Is Mediated by Glucose-Induced IL-1β

1
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Paclitaxel Promotes Tumor-Infiltrating Macrophages in Breast Cancer - Jun Shen, Cong Chen, Zhaoqing Li, Shufang Hu, 2020

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Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease

1
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Temporal network analysis identifies early physiological and transcriptomic indicators of mild drought in Brassica rapa

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Distinct Transcriptional Responses across Tissue-Resident Macrophages to Short-Term and Long-Term Metabolic Challenge

1
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The pearl oyster Pinctada fucata martensii genome and multi-omic analyses provide insights into biomineralization

1
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Untitled document

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Nov 2018
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Human Huntington’s Disease iPSC-Derived Cortical Neurons Display Altered Transcriptomics, Morphology, and Maturation

1
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Identification of Therapeutic Targets in Rhabdomyosarcoma through Integrated Genomic, Epigenomic, and Proteomic Analyses

1
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Early Transcriptional Divergence Marks Virus-Specific Primary Human CD8+ T Cells in Chronic versus Acute Infection

1
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Epigenetic drift of H3K27me3 in aging links glycolysis to healthy longevity in Drosophila

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Dissecting the Causal Mechanism of X-Linked Dystonia-Parkinsonism by Integrating Genome and Transcriptome Assembly

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FoxP2 isoforms delineate spatiotemporal transcriptional networks for vocal learning in the zebra finch

1
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The Immune Landscape of Cancer

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Microbiome Influences Prenatal and Adult Microglia in a Sex-Specific Manner

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ncbi.nlm.nih.gov/pmc/articles/PMC5628015/
europepmc.org europepmc.org

Untitled document

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europepmc.org/articles/PMC5628015/
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Untitled document

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europepmc.org/articles/PMC5597905/
Nov 2017
elifesciences.org elifesciences.org

Neuropathological and transcriptomic characteristics of the aged brain

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1. tgilhou 13 Nov 2017
  
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  weighted gene co-expression network analysis (WGCNA)
  
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elifesciences.org/articles/31126
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A transcriptome‐based assessment of the astrocytic dystrophin‐associated complex in the developing human brain

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onlinelibrary.wiley.com/doi/10.1002/jnr.24082/full
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A Multi-network Approach Identifies Protein-Specific Co-expression in Asymptomatic and Symptomatic Alzheimer’s Disease

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sciencedirect.com/science/article/pii/S2405471216303702

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