102 Matching Annotations
  1. Aug 2025
  2. febs.onlinelibrary.wiley.com febs.onlinelibrary.wiley.com
    FEBS Press
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    febs.onlinelibrary.wiley.com/doi/full/10.1002/1878-0261.70107
  3. Jul 2025
  4. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Human gut microbiome gene co-expression network reveals a loss in taxonomic and functional diversity in Parkinson’s disease
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    pmc.ncbi.nlm.nih.gov/articles/PMC12289924/
  5. May 2025
  6. www.sciencedirect.com www.sciencedirect.com
    Enhanced B cell and complement cascade gene signatures in patients with neuropsychiatric systemic lupus erythematosus
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    sciencedirect.com/science/article/pii/S0003496725008933
  7. Mar 2025
  8. www.nature.com www.nature.com
    Comparative analysis of Parkinson’s and inflammatory bowel disease gut microbiomes reveals shared butyrate-producing bacteria depletion
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    nature.com/articles/s41531-025-00894-4
  9. Feb 2025
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    Systems immunology analysis of human immune organoids identifies host-specific correlates of protection to different influenza vaccines
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    sciencedirect.com/science/article/pii/S1934590925000141
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    Distinct mismatch-repair complex genes set neuronal CAG-repeat expansion rate to drive selective pathogenesis in HD mice
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    sciencedirect.com/science/article/pii/S009286742500100X
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    Using multiomic integration to improve blood biomarkers of major depressive disorder: a case-control study
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    sciencedirect.com/science/article/pii/S2352396425000131
  13. Dec 2024
  14. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Dual gene set enrichment analysis (dualGSEA); an R function that enables more robust biological discovery and pre-clinical model alignment from transcriptomics data
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    pmc.ncbi.nlm.nih.gov/articles/PMC11618328/
  15. Nov 2024
  16. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Building a community-driven bioinformatics platform to facilitate Cannabis sativa multi-omics research
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    pmc.ncbi.nlm.nih.gov/articles/PMC11515022/
  17. Sep 2024
  18. www.biorxiv.org www.biorxiv.org
    A Comprehensive Proteogenomic and Spatial Analysis of Innate and Acquired Resistance of Metastatic Melanoma to Immune Checkpoint Blockade Therapies
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    biorxiv.org/content/10.1101/2024.09.12.612675v1
  19. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Disentangling the riddle of systemic lupus erythematosus with antiphospholipid syndrome: blood transcriptome analysis reveals a less-pronounced IFN-signature and distinct molecular profiles in venous versus arterial events
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    ncbi.nlm.nih.gov/pmc/articles/PMC11420729/
  20. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Proteogenomics of Prostate Cancer Radioresistance
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    ncbi.nlm.nih.gov/pmc/articles/PMC11411600/
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    The Role of MFN2 in Regulating Endothelial Cell Senescence: Implications for Vascular Aging
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    sciencedirect.com/science/article/pii/S2589004224020340
  22. link.springer.com link.springer.com
    Significance of tumor mutation burden combined with immune infiltrates in the progression and prognosis of ovarian cancer
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    link.springer.com/article/10.1186/s12935-020-01472-9
  23. Aug 2024
  24. www.tandfonline.com www.tandfonline.com
    Drought-induced molecular changes in crown of various barley phytohormone mutants
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    tandfonline.com/doi/abs/10.1080/15592324.2024.2371693
  25. Jul 2024
  26. www.sciencedirect.com www.sciencedirect.com
    Analyzing embryo dormancy at single-cell resolution reveals dynamic transcriptional responses and activation of integrin-Yap/Taz prosurvival signaling
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    sciencedirect.com/science/article/pii/S1934590924002509
  27. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Drought-induced molecular changes in crown of various barley phytohormone mutants
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    ncbi.nlm.nih.gov/pmc/articles/PMC11210921/
  28. Jun 2024
  29. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The telomere-to-telomere (T2T) genome of Peucedanum praeruptorum Dunn provides insights into the genome evolution and coumarin biosynthesis
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    ncbi.nlm.nih.gov/pmc/articles/PMC11152176/
  30. May 2024
  31. www.biorxiv.org www.biorxiv.org
    Evaluation of Gene Set Enrichment Analysis (GSEA) tools highlights the value of single sample approaches over pairwise for robust biological discovery
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    biorxiv.org/content/10.1101/2024.03.15.585228v1
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Novel Spirocyclic Dimer, SpiD3, Targets Chronic Lymphocytic Leukemia Survival Pathways with Potent Preclinical Effects
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    ncbi.nlm.nih.gov/pmc/articles/PMC11110724/
  33. www.sciencedirect.com www.sciencedirect.com
    Phenotypic and spatial heterogeneity of brain myeloid cells after stroke is associated with cell ontogeny, tissue damage, and brain connectivity
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    sciencedirect.com/science/article/pii/S2211124724005783
  34. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptional profiles associated with coronary artery disease in type 2 diabetes mellitus
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    ncbi.nlm.nih.gov/pmc/articles/PMC11066158/
  35. Apr 2024
  36. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mapping brain gene coexpression in daytime transcriptomes unveils diurnal molecular networks and deciphers perturbation gene signatures
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    ncbi.nlm.nih.gov/pmc/articles/PMC9665885/
  37. Mar 2024
  38. www.mdpi.com www.mdpi.com
    The Chronic Effects of a Single Low-Intensity Blast Exposure on Phosphoproteome Networks and Cognitive Function Influenced by Mutant Tau Overexpression
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    mdpi.com/1422-0067/25/6/3338
  39. 52.53.155.43 52.53.155.43
    HIV-2 MEDIATED EFFECTS ON TARGET AND BYSTANDER CELLS INDUCE PLASMA PROTEOME REMODELLING
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    52.53.155.43/da786418a5084198f16fc997d2c488ca198df32d/1-s2.0-S2589004224005650-main-html.html
  40. Feb 2024
  41. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Immunogenomic Landscape of Neuroendocrine Prostate Cancer
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    ncbi.nlm.nih.gov/pmc/articles/PMC10524949/
  42. Jan 2024
  43. www.nature.com www.nature.com
    A new genomic framework to categorize pediatric acute myeloid leukemia
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    nature.com/articles/s41588-023-01640-3
  44. www.sciencedirect.com www.sciencedirect.com
    Abnormal functional connectivity within the prefrontal cortex is associated with multiple plasma lipid species in major depressive disorder
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    sciencedirect.com/science/article/pii/S0165032723015409
  45. Dec 2023
  46. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Pharmacogenomic Analysis of Combined Therapies against Glioblastoma Based on Cell Markers from Single-Cell Sequencing
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    ncbi.nlm.nih.gov/pmc/articles/PMC10675611/
  47. Nov 2023
  48. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Precision Medicine and Complex Disease: Blood pressure and the kidney cortex transcriptome response to high-sodium diet challenge in female nonhuman primates
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    ncbi.nlm.nih.gov/pmc/articles/PMC9639778/
  49. Oct 2023
  50. www.sciencedirect.com www.sciencedirect.com
    Prenatal alcohol alters inflammatory signatures in enteric portal tissues following adult-onset cerebrovascular ischemic stroke
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    sciencedirect.com/science/article/pii/S2589004223019971
  51. Aug 2023
  52. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Network analysis identifies strain-dependent response to tau and tau seeding-associated genes
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    ncbi.nlm.nih.gov/pmc/articles/PMC10443211/
  53. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Gene expression genetics of the striatum of Diversity Outbred mice
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    ncbi.nlm.nih.gov/pmc/articles/PMC10404230/
  54. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Proteomic analysis of the human hippocampus identifies neuronal pentraxin 1 (NPTX1) as synapto-axonal target in late-stage Parkinson's disease
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    onlinelibrary.wiley.com/doi/10.1111/jnc.15924
  55. Jul 2023
  56. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A network-based approach reveals long non-coding RNAs associated with disease activity in lupus nephritis: key pathways for flare and potential biomarkers to be used as liquid biopsies
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    ncbi.nlm.nih.gov/pmc/articles/PMC10355154/
  57. Jun 2023
  58. www.sciencedirect.com www.sciencedirect.com
    hdWGCNA identifies co-expression networks in high-dimensional transcriptomics data
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    sciencedirect.com/science/article/pii/S2667237523001273
  59. May 2023
  60. www.biorxiv.org www.biorxiv.org
    Gene expression genetics of the striatum of Diversity Outbred mice
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    biorxiv.org/content/10.1101/2023.05.11.540390v1
  61. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptome network analysis implicates CX3CR1-positive type 3 dendritic cells in non-infectious uveitis
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    ncbi.nlm.nih.gov/pmc/articles/PMC10185339/
  62. www.sciencedirect.com www.sciencedirect.com
    An in vivo neuroimmune organoid model to study human microglia phenotypes
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    sciencedirect.com/science/article/pii/S009286742300418X
  63. Feb 2023
  64. link.springer.com link.springer.com
    Genes critical for development and differentiation of dopaminergic neurons are downregulated in Parkinson’s disease
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    link.springer.com/article/10.1007/s00702-023-02604-x
  65. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptome profiling disclosed the effect of single and combined drought and heat stress on reprogramming of genes expression in barley flag leaf
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    ncbi.nlm.nih.gov/pmc/articles/PMC9885109/
  66. Nov 2022
  67. www.mdpi.com www.mdpi.com
    Identification and Application of a Novel Immune-Related lncRNA Signature on the Prognosis and Immunotherapy for Lung Adenocarcinoma
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    mdpi.com/2075-4418/12/11/2891
  68. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-cell RNA sequencing reveals different signatures of mesenchymal stromal cell pluripotent-like and multipotent populations
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    ncbi.nlm.nih.gov/pmc/articles/PMC9633745/
  69. Oct 2022
  70. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mapping brain gene coexpression in daytime transcriptomes unveils diurnal molecular networks and deciphers perturbation gene signatures
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    ncbi.nlm.nih.gov/pmc/articles/PMC9665885/
  71. Sep 2022
  72. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Biological misinterpretation of transcriptional signatures in tumor samples can unknowingly undermine mechanistic understanding and faithful alignment with preclinical data
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    ncbi.nlm.nih.gov/pmc/articles/PMC9475248/
  73. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Combined – whole blood and skin fibroblasts- transcriptomic analysis in Psoriatic Arthritis reveals molecular signatures of activity, resistance and early response to treatment
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    ncbi.nlm.nih.gov/pmc/articles/PMC9493103/
  74. www.sciencedirect.com www.sciencedirect.com
    A combination of neuroimaging and plasma metabolomic analysis suggests inflammation is associated with white matter structural connectivity in major depressive disorder
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    sciencedirect.com/science/article/pii/S0165032722009624
  75. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Interrogation of T Cell-Enriched Tumors Reveals Prognostic and Immunotherapeutic Implications of Polyamine Metabolism
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    ncbi.nlm.nih.gov/pmc/articles/PMC9432485/
  76. Aug 2022
  77. www.sciencedirect.com www.sciencedirect.com
    LncRNA and mRNA expression profiles in brown adipose tissue of obesity-prone and obesity-resistant mice
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    sciencedirect.com/science/article/pii/S2589004222010811
  78. Jun 2022
  79. www.sciencedirect.com www.sciencedirect.com
    Absence of microglia promotes diverse pathologies and early lethality in Alzheimer’s disease mice
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    sciencedirect.com/science/article/pii/S2211124722007434
  80. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A Whole Transcriptome Analysis in Peripheral Blood Suggests That Energy Metabolism and Inflammation Are Involved in Major Depressive Disorder
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    ncbi.nlm.nih.gov/pmc/articles/PMC9136012/
  81. May 2022
  82. www.sciencedirect.com www.sciencedirect.com
    Regionally defined proteomic profiles of human cerebral tissue and organoids reveal conserved molecular modules of neurodevelopment
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    sciencedirect.com/science/article/pii/S2211124722006192
  83. www.sciencedirect.com www.sciencedirect.com
    Isolation disrupts social interactions and destabilizes brain development in bumblebees
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    sciencedirect.com/science/article/pii/S0960982222007023
  84. Apr 2022
  85. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A conditional gene-based association framework integrating isoform-level eQTL data reveals new susceptibility genes for schizophrenia
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    ncbi.nlm.nih.gov/pmc/articles/PMC9005191/
  86. Mar 2022
  87. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Human pancreatic islet miRNA-mRNA networks of altered miRNAs due to glycaemic status
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    ncbi.nlm.nih.gov/pmc/articles/PMC8927907/
  88. Feb 2022
  89. www.sciencedirect.com www.sciencedirect.com
    Uninterrupted CAG repeat drives striatum-selective transcriptionopathy and nuclear pathogenesis in human Huntingtin BAC mice
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    sciencedirect.com/science/article/pii/S089662732200006X
  90. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multi-Omics Profiling Suggesting Intratumoral Mast Cells as Predictive Index of Breast Cancer Lung Metastasis
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    ncbi.nlm.nih.gov/pmc/articles/PMC8801492/
  91. Dec 2021
  92. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Wnt signaling mediates acquisition of blood–brain barrier properties in naïve endothelium derived from human pluripotent stem cells
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    ncbi.nlm.nih.gov/pmc/articles/PMC8664294/
  93. Nov 2021
  94. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Epigenome-wide analysis of DNA methylation and coronary heart disease: a nested case-control study
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    ncbi.nlm.nih.gov/pmc/articles/PMC8585480/
  95. Oct 2021
  96. link.springer.com link.springer.com
    Pan-cancer analysis combined with experiments predicts CTHRC1 as a therapeutic target for human cancers
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    link.springer.com/article/10.1186/s12935-021-02266-3
  97. Sep 2021
  98. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Subventricular zone/white matter microglia reconstitute the empty adult microglial niche in a dynamic wave
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    ncbi.nlm.nih.gov/pmc/articles/PMC8425950/
  99. Aug 2021
  100. onlinelibrary.wiley.com onlinelibrary.wiley.com
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    onlinelibrary.wiley.com/doi/full/10.1002/jcb.27567
  101. www.ncbi.nlm.nih.govhttp: www.ncbi.nlm.nih.govhttp:
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    ncbi.nlm.nih.govhttp://europepmc.org/articles/PMC6098119/
  102. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    ncbi.nlm.nih.gov/pmc/articles/PMC5736353/
  103. www.sciencedirect.com www.sciencedirect.com
    Uncoupling of gene expression from copy number presents therapeutic opportunities in aneuploid cancers
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    sciencedirect.com/science/article/pii/S2666379121001981
  104. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease
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    ncbi.nlm.nih.gov/pmc/articles/PMC6176871/
  105. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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    ncbi.nlm.nih.gov/pmc/articles/PMC6098119/
  106. Jul 2021
  107. europepmc.org europepmc.org
    Inducible and reversible phenotypes in a novel mouse model of Friedreich's Ataxia.
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    europepmc.org/articles/PMC5736353/
  108. Jun 2021
  109. www.sciencedirect.com www.sciencedirect.com
    Follicular lymphoma triggers phenotypic and functional remodeling of the human lymphoid stromal cell landscape
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    sciencedirect.com/science/article/pii/S1074761321002259
  110. May 2021
  111. onlinelibrary.wiley.com onlinelibrary.wiley.com
    As above, so below: Whole transcriptome profiling demonstrates strong molecular similarities between avian dorsal and ventral pallial subdivisions
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    onlinelibrary.wiley.com/doi/10.1002/cne.25159
  112. www.sciencedirect.com www.sciencedirect.com
    Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation
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    sciencedirect.com/science/article/pii/S089662732030475X
  113. Feb 2021
  114. www.sciencedirect.com www.sciencedirect.com
    Distinct Transcriptional Responses across Tissue-Resident Macrophages to Short-Term and Long-Term Metabolic Challenge
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    sciencedirect.com/science/article/pii/S2211124720300140
  115. Jan 2021
  116. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The leukocyte non-coding RNA landscape in critically ill patients with sepsis
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    ncbi.nlm.nih.gov/pmc/articles/PMC7775110/
  117. Dec 2020
  118. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    16p11.2 microdeletion imparts transcriptional alterations in human iPSC-derived models of early neural development
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    ncbi.nlm.nih.gov/pmc/articles/PMC7695459/
  119. Sep 2020
  120. academic.oup.com academic.oup.com
    De novo genome assembly and Hi-C analysis reveal an association between chromatin architecture alterations and sex differentiation in the woody plant Jatropha curcas
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    academic.oup.com/gigascience/article/9/2/giaa009/5734639
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    Postprandial Hypoglycemia in Patients after Gastric Bypass Surgery Is Mediated by Glucose-Induced IL-1β
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    sciencedirect.com/science/article/pii/S1550413120300723
  122. journals.sagepub.com journals.sagepub.com
    Paclitaxel Promotes Tumor-Infiltrating Macrophages in Breast Cancer - Jun Shen, Cong Chen, Zhaoqing Li, Shufang Hu, 2020
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    journals.sagepub.com/doi/full/10.1177/1533033820945821
  123. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease
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    ncbi.nlm.nih.gov/pmc/articles/PMC6176871/
  124. elifesciences.org elifesciences.org
    Temporal network analysis identifies early physiological and transcriptomic indicators of mild drought in Brassica rapa
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    elifesciences.org/articles/29655
  125. www.sciencedirect.com www.sciencedirect.com
    Distinct Transcriptional Responses across Tissue-Resident Macrophages to Short-Term and Long-Term Metabolic Challenge
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    sciencedirect.com/science/article/pii/S2211124720300140
  126. academic.oup.com academic.oup.com
    The pearl oyster Pinctada fucata martensii genome and multi-omic analyses provide insights into biomineralization
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    academic.oup.com/gigascience/article/6/8/gix059/4034775
  127. Jan 2020
  128. www.sciencedirect.com www.sciencedirect.com
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    sciencedirect.com/science/article/pii/S2211124719300592
  129. Nov 2018
  130. www.sciencedirect.com www.sciencedirect.com
    Human Huntington’s Disease iPSC-Derived Cortical Neurons Display Altered Transcriptomics, Morphology, and Maturation
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    sciencedirect.com/science/article/pii/S2211124718315365
  131. www.sciencedirect.com www.sciencedirect.com
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