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24 Matching Annotations

Sep 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

The Earth Hologenome Initiative: Data Release 1

1
1. scibot 11 Sep 2025
  
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  RRID:SCR_003475
  
  DOI: 10.1093/gigascience/giaf102
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12412122/
Aug 2025
www.sciencedirect.com www.sciencedirect.com

Bronze Age Yersinia pestis genome from sheep sheds light on hosts and evolution of a prehistoric plague lineage

1
1. scibot 12 Aug 2025
  
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  RRID:SCR_003475
  
  DOI: 10.1016/j.cell.2025.07.029
  
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sciencedirect.com/science/article/pii/S0092867425008517
Jul 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Modular DNA barcoding of nanobodies enables multiplexed in situ protein imaging and high-throughput biomolecule detection

1
1. scibot 25 Jul 2025
  
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  RRID:SCR_003475
  
  DOI: 10.7554/eLife.105225
  
  Resource: Snakemake (RRID:SCR_003475)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12283080/
52.53.155.43 52.53.155.43

1-s2.0-S2589004225014087-main-html.html

1
1. scibot 22 Jul 2025
  
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  RRID:SCR_003475
  
  DOI: 10.1016/j.isci.2025.113147
  
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52.53.155.43/3e67ae4731f75e6f120a4c7a7c507c84a3acae93/1-s2.0-S2589004225014087-main-html.html
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

SeuratExtend: streamlining single-cell RNA-seq analysis through an integrated and intuitive framework

1
1. scibot 10 Jul 2025
  
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  RRID:SCR_003475
  
  DOI: 10.1093/gigascience/giaf076
  
  Resource: Snakemake (RRID:SCR_003475)
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12236070/
Apr 2025
aacrjournals.org aacrjournals.org

A Phase II Study of Abemaciclib for Patients with Retinoblastoma-Positive, Metastatic Triple-Negative Breast Cancer

1
1. scibot 17 Apr 2025
  
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  RRID:SCR_003475
  
  DOI: 10.1158/1078-0432.CCR-24-2647
  
  Resource: Snakemake (RRID:SCR_003475)
  
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aacrjournals.org/clincancerres/article/31/8/1427/754531/A-Phase-II-Study-of-Abemaciclib-for-Patients-with
Oct 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

RiboSnake – a user-friendly, robust, reproducible, multipurpose and documentation-extensive pipeline for 16S rRNA gene microbiome analysis

1
1. scibot 06 Oct 2024
  
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  RRID:SCR_003475
  
  DOI: 10.46471/gigabyte.132
  
  Resource: Snakemake (RRID:SCR_003475)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11448241/
Jul 2024
www.science.org www.science.org

The annotation of GBA1 has been concealed by its protein-coding pseudogene GBAP1

1
1. scibot 23 Jul 2024
  
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  RRID:SCR_003475
  
  DOI: 10.1126/sciadv.adk1296
  
  Resource: Snakemake (RRID:SCR_003475)
  
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science.org/doi/10.1126/sciadv.adk1296
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

gNOMO2: a comprehensive and modular pipeline for integrated multi-omics analyses of microbiomes

1
1. scibot 17 Jul 2024
  
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  RRID:SCR_003475
  
  DOI: 10.1093/gigascience/giae038
  
  Resource: Snakemake (RRID:SCR_003475)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11240238/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The annotation of GBA1 has been concealed by its protein-coding pseudogene GBAP1

1
1. scibot 02 Jul 2024
  
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  RRID:SCR_003475
  
  DOI: 10.1126/sciadv.adk1296
  
  Resource: Snakemake (RRID:SCR_003475)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC11204300/
Jan 2024
www.sciencedirect.com www.sciencedirect.com

A modular and adaptable analysis pipeline to compare slow cerebral rhythms across heterogeneous datasets

1
1. scibot 09 Jan 2024
  
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  SCR_003475
  
  DOI: 10.1016/j.crmeth.2023.100681
  
  Resource: Snakemake (RRID:SCR_003475)
  
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sciencedirect.com/science/article/pii/S266723752300365X
Nov 2023
www.sciencedirect.com www.sciencedirect.com

An atlas of continuous adaptive evolution in endemic human viruses

1
1. scibot 03 Nov 2023
  
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  RRID:SCR_003475
  
  DOI: 10.1016/j.chom.2023.09.012
  
  Resource: Snakemake (RRID:SCR_003475)
  
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sciencedirect.com/science/article/pii/S1931312823003803
Apr 2023
open-research-europe.ec.europa.eu open-research-europe.ec.europa.eu

Global sensitivity analysis to enhance the transparency and rigour of energy system optimisation modelling

1
1. scibot 19 Apr 2023
  
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  RRID:RRID:SCR_003475
  
  DOI: 10.12688/openreseurope.15461.1
  
  Resource: Snakemake (RRID:SCR_003475)
  
  Curator: @scibot
  
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open-research-europe.ec.europa.eu/articles/3-30/v1
Feb 2023
52.53.155.43 52.53.155.43

2211.08527-html.html

1
1. scibot 15 Feb 2023
  
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  RRID:SCR_003475
  
  DOI: 10.48550/arXiv.2211.08527
  
  Resource: Snakemake (RRID:SCR_003475)
  
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52.53.155.43/92b72c184514a17d55720b14d106ce41400fe089/2211.08527-html.html
Jan 2023
www.nature.com www.nature.com

A chromosome-level genome assembly of Plantago ovata

1
1. scibot 31 Jan 2023
  
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  RRID:SCR_003475
  
  DOI: 10.1038/s41598-022-25078-5
  
  Resource: Snakemake (RRID:SCR_003475)
  
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nature.com/articles/s41598-022-25078-5
Apr 2022
aacrjournals.org aacrjournals.org

FREQUENCY AND GENOMIC ASPECTS OF INTRINSIC RESISTANCE TO VISMODEGIB IN LOCALLY ADVANCED BASAL CELL CARCINOMA

1
1. scibot 05 Apr 2022
  
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  RRID:SCR_003475
  
  DOI: 10.1158/1078-0432.CCR-21-3764
  
  Resource: Snakemake (RRID:SCR_003475)
  
  Curator: @scibot
  
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aacrjournals.org/clincancerres/article/28/7/1422/682219/Frequency-and-Genomic-Aspects-of-Intrinsic
Oct 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Structural characterization of NrnC identifies unifying features of dinucleotidases

1
1. scibot 08 Oct 2021
  
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  RRID:SCR_003475
  
  DOI: 10.7554/eLife.70146
  
  Resource: Snakemake (RRID:SCR_003475)
  
  Curator: @scibot
  
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ncbi.nlm.nih.gov/pmc/articles/PMC8492067/
Dec 2020
academic.oup.com academic.oup.com

Dadasnake, a Snakemake implementation of DADA2 to process amplicon sequencing data for microbial ecology

1
1. scibot 07 Dec 2020
  
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  RRID:SCR_003475
  
  DOI: 10.1093/gigascience/giaa135
  
  Resource: Snakemake (RRID:SCR_003475)
  
  Curator: @evieth
  
  SciCrunch record: RRID:SCR_003475
  
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  RRIDCUR:Validated RRID:SCR_003475
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RRIDCUR:Validated

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academic.oup.com/gigascience/article/9/12/giaa135/6011256
Sep 2020
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Recommendations to enhance rigor and reproducibility in biomedical research

1
1. scibot 26 Sep 2020
  
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  RRID:SCR_003475
  
  DOI: 10.1093/gigascience/giaa056
  
  Resource: Snakemake (RRID:SCR_003475)
  
  Curator: @evieth
  
  SciCrunch record: RRID:SCR_003475
  
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  RRIDCUR:Validated RRID:SCR_003475
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RRIDCUR:Validated

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ncbi.nlm.nih.gov/pmc/articles/PMC7263079/
academic.oup.com academic.oup.com

Watchdog 2.0: New developments for reusability, reproducibility, and workflow execution

1
1. scibot 13 Sep 2020
  
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  RRID:SCR_003475
  
  DOI: 10.1093/gigascience/giaa068
  
  Resource: Snakemake (RRID:SCR_003475)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:SCR_003475
  
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  RRIDCUR:Validated RRID:SCR_003475
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academic.oup.com/gigascience/article/9/6/giaa068/5858407
www.sciencedirect.com www.sciencedirect.com

Genomic Rewiring of SOX2 Chromatin Interaction Network during Differentiation of ESCs to Postmitotic Neurons

1
1. scibot 08 Sep 2020
  
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  RRID:SCR_003475
  
  DOI: 10.1016/j.cels.2020.05.003
  
  Resource: Snakemake (RRID:SCR_003475)
  
  Curator: @ethanbadger
  
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  RRID:SCR_003475 RRIDCUR:Validated
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sciencedirect.com/science/article/pii/S2405471220301885
Jan 2020
www.sciencedirect.com www.sciencedirect.com

Two Separation-of-Function Isoforms of Human TPP1 Dictate Telomerase Regulation in Somatic and Germ Cells

1
1. scibot 13 Jan 2020
  
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  RRID:SCR_003475
  
  DOI: 10.1016/j.celrep.2019.05.073
  
  Resource: Snakemake (RRID:SCR_003475)
  
  Curator: @ethanbadger
  
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  RRID:SCR_003475 RRIDCUR:Validated
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sciencedirect.com/science/article/pii/S2211124719307028
www.sciencedirect.com www.sciencedirect.com

Quantification of Differential Transcription Factor Activity and Multiomics-Based Classification into Activators and Repressors: diffTF

1
1. scibot 13 Jan 2020
  
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  RRID:SCR_003475
  
  DOI: 10.1016/j.celrep.2019.10.106
  
  Resource: Snakemake (RRID:SCR_003475)
  
  Curator: @ethanbadger
  
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  RRID:SCR_003475 RRIDCUR:Validated
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sciencedirect.com/science/article/pii/S2211124719314391
Nov 2017
www.sciencedirect.com www.sciencedirect.com

Histone Variant H2A.L.2 Guides Transition Protein-Dependent Protamine Assembly in Male Germ Cells

1
1. scibot 08 Nov 2017
  
  in Public
  
  Snakemake v.3.9.0
  
  Curator: @Zeljana_Babic
  
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  (Snakemake, RRID:SCR_003475)
  
  SciCrunch record: RRID:SCR_003475
  
  Alternate resolvers: SciCrunch xml N2T identifiers.org
  
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  RRID:SCR_003475 RRIDCUR:Missing
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sciencedirect.com/science/article/pii/S1097276517301624