53 Matching Annotations
  1. Nov 2024
  2. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    ISWI chromatin remodeling complexes recruit NSD2 and H3K36me2 in pericentromeric heterochromatin
    1
    1. scibot 08 Nov 2024
      RRID:SCR_004891

      DOI: 10.1083/jcb.202310084

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    pmc.ncbi.nlm.nih.gov/articles/PMC11076809/
  3. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    Building a community-driven bioinformatics platform to facilitate Cannabis sativa multi-omics research
    1
    1. scibot 07 Nov 2024
      RRID:SCR_004891

      DOI: 10.46471/gigabyte.137

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    pmc.ncbi.nlm.nih.gov/articles/PMC11515022/
  4. pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov
    CannSeek? Yes we Can! An open-source single nucleotide polymorphism database and analysis portal for Cannabis sativa
    1
    1. scibot 07 Nov 2024
      RRID:SCR_004891

      DOI: 10.46471/gigabyte.135

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    pmc.ncbi.nlm.nih.gov/articles/PMC11480739/
  5. May 2024
  6. 52.53.155.43 52.53.155.43
    mcr-23-0295-html.html
    1
    1. scibot 23 May 2024
      RRID:SCR_004891

      DOI: 10.1158/1541-7786.mcr-23-0295

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    52.53.155.43/d0655220046c67483bcefd25ef239fc58ad80cdd/mcr-23-0295-html.html
  7. www.nature.com www.nature.com
    The genomic landscape of Vk*MYC myeloma highlights shared pathways of transformation between mice and humans
    1
    1. scibot 08 May 2024
      RRID:SCR_004891

      DOI: 10.1038/s41467-024-48091-w

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    nature.com/articles/s41467-024-48091-w
  8. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Molecular and pathological characterization of YAP1-expressing small cell lung cancer cell lines leads to reclassification as SMARCA4-deficient malignancies
    1
    1. scibot 03 May 2024
      RRID:SCR_004891

      DOI: 10.1158/1078-0432.CCR-23-2360

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    ncbi.nlm.nih.gov/pmc/articles/PMC11061608/
  9. Apr 2024
  10. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Streamlining remote nanopore data access with slow5curl
    1
    1. scibot 18 Apr 2024
      RRID:SCR_004891

      DOI: 10.1093/gigascience/giae016

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    ncbi.nlm.nih.gov/pmc/articles/PMC11010652/
  11. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    PALB2-mutated human mammary cells display a broad spectrum of morphological and functional abnormalities induced by increased TGFβ signaling
    1
    1. scibot 13 Apr 2024
      RRID:SCR_004891

      DOI: 10.1007/s00018-024-05183-6

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    ncbi.nlm.nih.gov/pmc/articles/PMC11006627/
  12. Feb 2024
  13. 52.53.155.43 52.53.155.43
    d1-html.html
    1
    1. scibot 29 Feb 2024
      RRID:SCR_004891

      DOI: 10.1158/1078-0432.ccr-23-2360

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    52.53.155.43/9d9c84a50a37d03d2f105a9516b773f31c793012/d1-html.html
  14. Jan 2024
  15. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Telomeric repeat evolution in the phylum Nematoda revealed by high-quality genome assemblies and subtelomere structures
    1
    1. scibot 05 Jan 2024
      RRID:SCR_004891

      DOI: 10.1101/gr.278124.123

      Resource: NCBI Sequence Read Archive (SRA) (RRID:SCR_004891)

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    ncbi.nlm.nih.gov/pmc/articles/PMC10760449/
  16. Nov 2023
  17. dx.doi.org dx.doi.org
    Population-specific Mutation Patterns in Breast Tumors from African American, European American, and Kenyan Patients
    1
    1. scibot 10 Nov 2023
      RRID:SCR_004891

      DOI: 10.1158/2767-9764.CRC-23-0165

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    dx.doi.org/10.1158/2767-9764.CRC-23-0165
  18. Oct 2023
  19. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Targeting MALAT1 Augments Sensitivity to PARP Inhibition by Impairing Homologous Recombination in Prostate Cancer
    1
    1. scibot 12 Oct 2023
      RRID:SCR_004891

      DOI: 10.1158/2767-9764.CRC-23-0089

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    ncbi.nlm.nih.gov/pmc/articles/PMC10561629/
  20. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    SpecHLA enables full-resolution HLA typing from sequencing data
    1
    1. scibot 06 Oct 2023
      RRID:SCR_004891

      DOI: 10.1016/j.crmeth.2023.100589

      Resource: NCBI Sequence Read Archive (SRA) (RRID:SCR_004891)

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    ncbi.nlm.nih.gov/pmc/articles/PMC10545945/
  21. Sep 2023
  22. www.sciencedirect.com www.sciencedirect.com
    Variation in the CENP-A sequence association landscape across diverse inbred mouse strains
    1
    1. scibot 30 Sep 2023
      RRID:SCR_004891

      DOI: 10.1016/j.celrep.2023.113178

      Resource: NCBI Sequence Read Archive (SRA) (RRID:SCR_004891)

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    sciencedirect.com/science/article/pii/S2211124723011907
  23. Aug 2023
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Gene expression genetics of the striatum of Diversity Outbred mice
    1
    1. scibot 10 Aug 2023
      RRID:SCR_004891

      DOI: 10.1038/s41597-023-02426-2

      Resource: NCBI Sequence Read Archive (SRA) (RRID:SCR_004891)

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    ncbi.nlm.nih.gov/pmc/articles/PMC10404230/
  25. Jun 2023
  26. www.biorxiv.org www.biorxiv.org
    Telomeric repeat evolution in the phylum Nematoda revealed by high-quality genome assemblies and subtelomere structures
    1
    1. scibot 01 Jun 2023
      RRID:SCR_004891

      DOI: 10.1101/2023.05.24.542215

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    biorxiv.org/content/10.1101/2023.05.24.542215v1
  27. May 2023
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evolution of Resistance to Irinotecan in Cancer Cells Involves Generation of Topoisomerase-Guided Mutations in Non-Coding Genome That Reduce the Chances of DNA Breaks
    1
    1. scibot 31 May 2023
      RRID:SCR_004891

      DOI: 10.3390/ijms24108717

      Resource: NCBI Sequence Read Archive (SRA) (RRID:SCR_004891)

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    ncbi.nlm.nih.gov/pmc/articles/PMC10218574/
  29. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Characterization of microbiomic and geochemical compositions across the photosynthetic fringe
    1
    1. scibot 16 May 2023
      RRID:SCR_004891

      DOI: 10.3389/fmicb.2023.1176606

      Resource: NCBI Sequence Read Archive (SRA) (RRID:SCR_004891)

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    ncbi.nlm.nih.gov/pmc/articles/PMC10178925/
  30. Apr 2023
  31. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Induction of PARP7 Creates a Vulnerability for Growth Inhibition by RBN2397 in Prostate Cancer Cells
    1
    1. scibot 20 Apr 2023
      RRID:SCR_004891

      DOI: 10.1158/2767-9764.CRC-23-0086

      Resource: NCBI Sequence Read Archive (SRA) (RRID:SCR_004891)

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    ncbi.nlm.nih.gov/pmc/articles/PMC10108886/
  32. Mar 2023
  33. www.pnas.org www.pnas.org
    Mouse models of human multiple myeloma subgroups
    1
    1. scibot 04 Mar 2023
      RRID:SCR_004891

      DOI: 10.1073/pnas.2219439120

      Resource: NCBI Sequence Read Archive (SRA) (RRID:SCR_004891)

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    pnas.org/doi/abs/10.1073/pnas.2219439120
  34. Feb 2023
  35. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    An updated version of the Madagascar periwinkle genome
    1
    1. scibot 10 Feb 2023
      RRID:SCR_004891

      DOI: 10.12688/f1000research.129212.1

      Resource: NCBI Sequence Read Archive (SRA) (RRID:SCR_004891)

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    ncbi.nlm.nih.gov/pmc/articles/PMC9902796/
  36. Jul 2022
  37. bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com
    BPS Publications
    1
    1. scibot 27 Jul 2022
      RRID:SCR_004891

      DOI: 10.1111/bph.15910

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    bpspubs.onlinelibrary.wiley.com/doi/10.1111/bph.15910
  38. May 2022
  39. f1000research.com f1000research.com
    F1000Research Article: The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.
    1
    1. scibot 21 May 2022
      RRID:SCR_004891

      DOI: 10.12688/f1000research.110194.1

      Resource: NCBI Sequence Read Archive (SRA) (RRID:SCR_004891)

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    f1000research.com/articles/11-530
  40. aacrjournals.org aacrjournals.org
    Single cell characterization of the cellular landscape of acral melanoma identifies novel targets for immunotherapy
    1
    1. scibot 19 May 2022
      RRID:SCR_00647

      DOI: 10.1158/1078-0432.CCR-21-3145

      Resource: NCBI Sequence Read Archive (SRA) (RRID:SCR_004891)

      Curator: @a5munoz

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    aacrjournals.org/clincancerres/article/28/10/2131/694823/Single-cell-Characterization-of-the-Cellular
  41. Apr 2022
  42. aacrjournals.org aacrjournals.org
    EBV infection in epithelial malignancies induces resistance to antitumor natural killer cells via F3-mediated platelet aggregation
    1
    1. scibot 05 Apr 2022
      RRID:SCR_004891

      DOI: 10.1158/0008-5472.CAN-21-2292

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    aacrjournals.org/cancerres/article/82/6/1070/682065/EBV-Infection-in-Epithelial-Malignancies-Induces
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Presence of H3K4me3 on Paternally Expressed Genes of the Paternal Genome From Sperm to Implantation
    1
    1. scibot 01 Apr 2022
      RRID:SCR_004891

      DOI: 10.3389/fcell.2022.838684

      Resource: NCBI Sequence Read Archive (SRA) (RRID:SCR_004891)

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    ncbi.nlm.nih.gov/pmc/articles/PMC8960379/
  44. Mar 2022
  45. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Increasing carbohydrate availability in the hindgut promotes hypothalamic neurotransmitter synthesis: aromatic amino acids linking the microbiota–brain axis
    1
    1. scibot 22 Mar 2022
      RRID:SCR_004891

      DOI: 10.1111/jnc.14709

      Resource: NCBI Sequence Read Archive (SRA) (RRID:SCR_004891)

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    onlinelibrary.wiley.com/doi/10.1111/jnc.14709
  46. Jul 2021
  47. academic.oup.com academic.oup.com
    Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database
    1
    1. scibot 31 Jul 2021
      Sequence Read Archive

      DOI: 10.1093/nar/gkz933

      Resource: NCBI Sequence Read Archive (SRA) (RRID:SCR_004891)

      Curator: @Naa003

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      RRID:SCR_004891 RRIDCUR:Missing
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    academic.oup.com/nar/advance-article/doi/10.1093/nar/gkz933/5626530
  48. www.jci.org www.jci.org
    CB1 agonism prolongs therapeutic window for hormone replacement in ovariectomized mice
    1
    1. scibot 30 Jul 2021
      NCBI’s Sequence Read Archive

      DOI: 10.1172/JCI123689

      Resource: NCBI Sequence Read Archive (SRA) (RRID:SCR_004891)

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    jci.org/articles/view/123689
  49. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
    1
    1. scibot 30 Jul 2021
      RRID:SCR_004891

      DOI: 10.1002/brb3.1148

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    ncbi.nlm.nih.gov/pmc/articles/PMC6305938/
  50. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Untitled document
    1
    1. scibot 30 Jul 2021
      RRID:SCR_004891

      DOI: 10.1002/brb3.1148

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    onlinelibrary.wiley.com/doi/full/10.1002/brb3.1148
  51. journal.frontiersin.org journal.frontiersin.org
    Comparative Analysis of Ralstonia solanacearum Methylomes
    1
    1. scibot 27 Jul 2021
      SCR_004891

      DOI: 10.3389/fpls.2017.00504

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      Curator: @Zeljana_Babic

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    journal.frontiersin.org/article/10.3389/fpls.2017.00504/full
  52. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Major genetic discontinuity and novel toxigenic species in Clostridioides difficile taxonomy
    1
    1. scibot 03 Jul 2021
      RRID:SCR_004891

      DOI: 10.7554/eLife.64325

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    ncbi.nlm.nih.gov/pmc/articles/PMC8241443/
  53. Jan 2021
  54. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Constitutive activation of cellular immunity underlies the evolution of resistance to infection in Drosophila
    1
    1. scibot 08 Jan 2021
      RRID:SCR_004891

      DOI: 10.7554/eLife.59095

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      Curator: @evieth

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    ncbi.nlm.nih.gov/pmc/articles/PMC7785293/
  55. Nov 2020
  56. www.frontiersin.org www.frontiersin.org
    Analyzing Ash Leaf-Colonizing Fungal Communities for Their Biological Control of Hymenoscyphus fraxineus
    1
    1. scibot 06 Nov 2020
      RRID:SCR_004891

      DOI: 10.3389/fmicb.2020.590944

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    frontiersin.org/article/10.3389/fmicb.2020.590944/full
  57. Sep 2020
  58. elifesciences.org elifesciences.org
    Aneuploidy as a cause of impaired chromatin silencing and mating-type specification in budding yeast
    1
    1. scibot 26 Sep 2020
      RRID:SCR_004891

      DOI: 10.7554/eLife.27991

      Resource: NCBI Sequence Read Archive (RRID:SCR_004891)

      Curator: @Naa003

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    elifesciences.org/articles/27991
  59. www.frontiersin.org www.frontiersin.org
    A Comparative Analysis of Ash Leaf-Colonizing Bacterial Communities Identifies Putative Antagonists of Hymenoscyphus fraxineus
    1
    1. scibot 16 Sep 2020
      RRID:SCR_004891

      DOI: 10.3389/fmicb.2020.00966

      Resource: NCBI Sequence Read Archive (RRID:SCR_004891)

      Curator: @evieth

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    frontiersin.org/article/10.3389/fmicb.2020.00966/full
  60. academic.oup.com academic.oup.com
    Watchdog 2.0: New developments for reusability, reproducibility, and workflow execution
    1
    1. scibot 11 Sep 2020
      RRID:SCR_004891

      DOI: 10.1093/gigascience/giaa068

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    academic.oup.com/gigascience/article/9/6/giaa068/5858407
  61. www.genetics.org www.genetics.org
    A Microbe Associated with Sleep Revealed by a Novel Systems-Genetic Analysis of the Microbiome in Collaborative Cross Mice
    1
    1. scibot 10 Sep 2020
      RRID:SCR_004891

      DOI: 10.1534/genetics.119.303013

      Resource: NCBI Sequence Read Archive (RRID:SCR_004891)

      Curator: @Naa003

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      RRID:SCR_004891 RRIDCUR:Validated
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    genetics.org/content/214/3/719
  62. elifesciences.org elifesciences.org
    The naive T-cell receptor repertoire has an extremely broad distribution of clone sizes
    2
    1. scibot 06 Sep 2020
      RRID:SCR_004891

      DOI: 10.7554/eLife.49900

      Resource: NCBI Sequence Read Archive (RRID:SCR_004891)

      Curator: @evieth

      SciCrunch record: RRID:SCR_004891

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      RRID:SCR_004891 RRIDCUR:Validated
    2. scibot 03 Sep 2020
      RRID:SCR_004891

      DOI: 10.7554/eLife.49900

      Resource: NCBI Sequence Read Archive (RRID:SCR_004891)

      Curator: @evieth

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      RRID:SCR_004891
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    elifesciences.org/articles/49900
  63. Jan 2020
  64. www.sciencedirect.com www.sciencedirect.com
    DUX4 Suppresses MHC Class I to Promote Cancer Immune Evasion and Resistance to Checkpoint Blockade
    1
    1. scibot 13 Jan 2020
      RRID:SCR_004891

      DOI: 10.1016/j.devcel.2019.06.011

      Resource: NCBI Sequence Read Archive (RRID:SCR_004891)

      Curator: @ethanbadger

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      RRID:SCR_004891 RRIDCUR:Validated
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    sciencedirect.com/science/article/pii/S1534580719305295
  65. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Untitled document
    1
    1. scibot 13 Jan 2020
      RRID:SCR_004891

      DOI: 10.1111/jnc.14709

      Resource: NCBI Sequence Read Archive (RRID:SCR_004891)

      Curator: @Naa003

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      RRID:SCR_004891 RRIDCUR:Validated
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    onlinelibrary.wiley.com/doi/full/10.1111/jnc.14709
  66. Nov 2018
  67. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Antibiotics‐induced modulation of large intestinal microbiota altered aromatic amino acid profile and expression of neurotransmitters in the hypothalamus of piglets
    1
    1. scibot 05 Nov 2018
      RRID:SCR_004891

      Curator: @Jmenke

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      (NCBI Sequence Read Archive, RRID:SCR_004891)

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      RRID:SCR_004891 RRIDCUR:Validated
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    onlinelibrary.wiley.com/doi/10.1111/jnc.14333
  68. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
    1
    1. scibot 05 Nov 2018
      RRID:SCR:004891

      Curator: @evieth

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      (NCBI Sequence Read Archive, RRID:SCR_004891)

      Originally identified as: RRID:SCR:004891

      SciCrunch record: RRID:SCR:004891

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      RRID:SCR_004891 RRIDCUR:Validated
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    ncbi.nlm.nih.gov/pmc/articles/PMC6130972/
  69. link.springer.com link.springer.com
    Navigating Xenbase: An Integrated <Emphasis Type="Italic">Xenopus</Emphasis> Genomics and Gene Expression Database
    1
    1. scibot 05 Nov 2018
      NCBI/SRA

      Curator: @evieth

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      (NCBI Sequence Read Archive, RRID:SCR_004891)

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      RRID:SCR_004891 RRIDCUR:Missing
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    link.springer.com/protocol/10.1007/978-1-4939-7737-6_10
  70. europepmc.org europepmc.org
    Untitled document
    1
    1. scibot 05 Nov 2018
      RRID:SCR_004891

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      (NCBI Sequence Read Archive, RRID:SCR_004891)

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      RRID:SCR_004891
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    europepmc.org/articles/PMC5779231/
  71. europepmc.org europepmc.org
    Co-expression of xenopsin and rhabdomeric opsin in photoreceptors bearing microvilli and cilia.
    1
    1. scibot 05 Nov 2018
      RRID:SCR_004891

      Curator: @evieth

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      (NCBI Sequence Read Archive, RRID:SCR_004891)

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      RRID:SCR_004891 RRIDCUR:Validated
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    europepmc.org/articles/PMC5648526/
  72. www.sciencedirect.com www.sciencedirect.com
    Dichotomous Expression of TNF Superfamily Ligands on Antigen-Presenting Cells Controls Post-priming Anti-viral CD4+ T Cell Immunity
    1
    1. scibot 05 Nov 2018
      RRID:SCR_004891

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      (NCBI Sequence Read Archive, RRID:SCR_004891)

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      RRID:SCR_004891
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    sciencedirect.com/science/article/pii/S1074761317304697
  73. Nov 2017
  74. elifesciences.org elifesciences.org
    A novel role for Ets4 in axis specification and cell migration in the spider Parasteatoda tepidariorum
    1
    1. scibot 08 Nov 2017
      RRID:SCR_004891

      Curator: @kaitlinsung

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      (NCBI Sequence Read Archive, RRID:SCR_004891)

      SciCrunch record: RRID:SCR_004891

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      RRID:SCR_004891 RRIDCUR:Validated
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    elifesciences.org/articles/27590
  75. www.sciencedirect.com www.sciencedirect.com
    Novel Predators Reshape Holozoan Phylogeny and Reveal the Presence of a Two-Component Signaling System in the Ancestor of Animals
    1
    1. scibot 08 Nov 2017
      SCR_004891

      Curator: @chewbeccax

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      (NCBI Sequence Read Archive, RRID:SCR_004891)

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      RRID:SCR_004891 RRIDCUR:Validated
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    sciencedirect.com/science/article/pii/S0960982217307078
  76. elifesciences.org elifesciences.org
    Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexity
    1
    1. scibot 08 Nov 2017
      SCR_004891

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      (NCBI Sequence Read Archive, RRID:SCR_004891)

      SciCrunch record: RRID:SCR_004891

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      RRID:SCR_004891
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    elifesciences.org/articles/22194v2
  77. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A diverse host thrombospondin-type-1 repeat protein repertoire promotes symbiont colonization during establishment of cnidarian-dinoflagellate symbiosis
    1
    1. scibot 08 Nov 2017
      SCR_004891

      Curator: @Zeljana_Babic

      Resource used:

      (NCBI Sequence Read Archive, RRID:SCR_004891)

      SciCrunch record: RRID:SCR_004891

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      RRID:SCR_004891 RRIDCUR:Validated
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    ncbi.nlm.nih.gov/pmc/articles/PMC5446238/