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24 Matching Annotations

Aug 2025
www.sciencedirect.com www.sciencedirect.com

Veillonella intestinal colonization promotes C. difficile infection in Crohn’s disease

1
1. scibot 26 Aug 2025
  
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  RRID:SCR_004915
  
  DOI: 10.1016/j.chom.2025.07.019
  
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sciencedirect.com/science/article/pii/S1931312825002914
Jun 2025
52.53.155.43 52.53.155.43

ycaf090-html.html

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1. scibot 11 Jun 2025
  
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  RRID:SCR_004915
  
  DOI: 10.1093/ismeco/ycaf090
  
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52.53.155.43/78af6db3eb536331564207a201ca5c6a2375d3ac/ycaf090-html.html
Mar 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Healthy microbiome—moving towards functional interpretation

1
1. scibot 27 Mar 2025
  
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  RRID:SCR_004915
  
  DOI: 10.1093/gigascience/giaf015
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11927397/
www.nature.com www.nature.com

Comparative analysis of Parkinson’s and inflammatory bowel disease gut microbiomes reveals shared butyrate-producing bacteria depletion

1
1. scibot 23 Mar 2025
  
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  RRID:SCR_004915
  
  DOI: 10.1038/s41531-025-00894-4
  
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nature.com/articles/s41531-025-00894-4
Jul 2024
www.cell.com www.cell.com

Proteobacteria impair anti-tumor immunity in the omentum by consuming arginine

1
1. scibot 18 Jul 2024
  
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  RRID:SCR_004915
  
  DOI: 10.1016/j.chom.2024.06.003
  
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cell.com/cell-host-microbe/abstract/S1931-3128(24)00197-5
Jun 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

LRTK: a platform agnostic toolkit for linked-read analysis of both human genome and metagenome

1
1. scibot 22 Jun 2024
  
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  RRID:SCR_004
  
  DOI: 10.1093/gigascience/giae028
  
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  Curator: @evieth
  
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  RRIDCUR:Unresolved RRID:SCR_004915 DOI:10.1093/gigascience/giae028
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ncbi.nlm.nih.gov/pmc/articles/PMC11170215/
Mar 2024
www.sciencedirect.com www.sciencedirect.com

Peripheral neuronal activation shapes the microbiome and alters gut physiology

1
1. scibot 22 Mar 2024
  
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  SCR_004915
  
  DOI: 10.1016/j.celrep.2024.113953
  
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sciencedirect.com/science/article/pii/S221112472400281X
Mar 2023
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Linking gut microbiome to bone mineral density: a shotgun metagenomic dataset from 361 elderly women

1
1. scibot 02 Mar 2023
  
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  RRID:SCR_004915
  
  DOI: 10.46471/gigabyte.12
  
  Resource: MetaPhlAn (RRID:SCR_004915)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9631969/
Jan 2023
www.sciencedirect.com www.sciencedirect.com

Enrichment of oral-derived bacteria in inflamed colorectal tumors and distinct associations of Fusobacterium in the mesenchymal subtype

1
1. scibot 27 Jan 2023
  
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  RRID:SCR_004915
  
  DOI: 10.1016/j.xcrm.2023.100920
  
  Resource: MetaPhlAn (RRID:SCR_004915)
  
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sciencedirect.com/science/article/pii/S2666379123000058
Apr 2022
www.sciencedirect.com www.sciencedirect.com

Acute and persistent effects of commonly used antibiotics on the gut microbiome and resistome in healthy adults

1
1. scibot 14 Apr 2022
  
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  RRID:SCR_004915
  
  DOI: 10.1016/j.celrep.2022.110649
  
  Resource: MetaPhlAn (RRID:SCR_004915)
  
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sciencedirect.com/science/article/pii/S2211124722004016
Aug 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Untitled document

1
1. scibot 13 Aug 2021
  
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  RRID:SCR_004915
  
  DOI: 10.1093/gigascience/giz020
  
  Resource: MetaPhlAn (RRID:SCR_004915)
  
  Curator: @scibot
  
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ncbi.nlm.nih.gov/pmc/articles/PMC6446249/
academic.oup.com academic.oup.com

Untitled document

1
1. scibot 08 Aug 2021
  
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  RRID:SCR_004915
  
  DOI: 10.1093/gigascience/gix044
  
  Resource: MetaPhlAn (RRID:SCR_004915)
  
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academic.oup.com/gigascience/article/6/7/1/3867068
Jul 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The Crohn’s disease polymorphism, ATG16L1 T300A, alters the gut microbiota and enhances the local Th1/Th17 response

1
1. scibot 31 Jul 2021
  
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  RRID:SCR_004915
  
  DOI: 10.7554/eLife.39982
  
  Resource: MetaPhlAn (RRID:SCR_004915)
  
  Curator: @evieth
  
  SciCrunch record: RRID:SCR_004915
  
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  RRID:SCR_004915 RRIDCUR:Validated
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ncbi.nlm.nih.gov/pmc/articles/PMC6342529/
febs.onlinelibrary.wiley.com febs.onlinelibrary.wiley.com

Compositional and functional features of the female premenopausal and postmenopausal gut microbiota

1
1. scibot 29 Jul 2021
  
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  Metaphlan
  
  DOI: 10.1002/1873-3468.13527
  
  Resource: MetaPhlAn (RRID:SCR_004915)
  
  Curator: @Naa003
  
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  RRID:SCR_004915 RRIDCUR:Missing
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febs.onlinelibrary.wiley.com/doi/full/10.1002/1873-3468.13527
May 2021
clincancerres.aacrjournals.org clincancerres.aacrjournals.org

Microbiome Analysis of More Than 2,000 NHS Bowel Cancer Screening Programme Samples Shows the Potential to Improve Screening Accuracy

1
1. scibot 10 May 2021
  
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  RRID:SCR_004915
  
  DOI: 10.1158/1078-0432.CCR-20-3807
  
  Resource: MetaPhlAn (RRID:SCR_004915)
  
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clincancerres.aacrjournals.org/content/27/8/2246
Apr 2021
www.sciencedirect.com www.sciencedirect.com

Potential role of indolelactate and butyrate in multiple sclerosis revealed by integrated microbiome-metabolome analysis

1
1. scibot 21 Apr 2021
  
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  RRID:SCR_004915
  
  DOI: 10.1016/j.xcrm.2021.100246
  
  Resource: MetaPhlAn (RRID:SCR_004915)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:SCR_004915
  
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  RRIDCUR:Validated RRID:SCR_004915
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sciencedirect.com/science/article/pii/S2666379121000628
Oct 2020
www.sciencedirect.com www.sciencedirect.com

Comparing Circadian Rhythmicity in the Human Gut Microbiome

1
1. scibot 31 Oct 2020
  
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  RRID:SCR_004915
  
  DOI: 10.1016/j.xpro.2020.100148
  
  Resource: MetaPhlAn (RRID:SCR_004915)
  
  Curator: @Naa003
  
  SciCrunch record: RRID:SCR_004915
  
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  RRIDCUR:Validated RRID:SCR_004915
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sciencedirect.com/science/article/pii/S2666166720301350
Jan 2020
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The Crohn’s disease polymorphism, ATG16L1 T300A, alters the gut microbiota and enhances the local Th1/Th17 response

1
1. scibot 13 Jan 2020
  
  in Public
  
  RRID:SCR_004915
  
  DOI: 10.7554/eLife.39982
  
  Resource: MetaPhlAn (RRID:SCR_004915)
  
  Curator: @evieth
  
  SciCrunch record: RRID:SCR_004915
  
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  RRID:SCR_004915 RRIDCUR:Validated
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ncbi.nlm.nih.gov/pmc/articles/PMC6342529/
www.sciencedirect.com www.sciencedirect.com

Untitled document

1
1. scibot 13 Jan 2020
  
  in Public
  
  RRID:SCR_004915
  
  DOI: 10.1016/j.celrep.2019.01.091
  
  Resource: MetaPhlAn (RRID:SCR_004915)
  
  Curator: @ethanbadger
  
  SciCrunch record: RRID:SCR_004915
  
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  RRID:SCR_004915 RRIDCUR:Validated
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sciencedirect.com/science/article/pii/S2211124719301287
academic.oup.com academic.oup.com

Untitled document

1
1. scibot 12 Jan 2020
  
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  RRID:SCR_004915
  
  DOI: 10.1093/gigascience/giz020
  
  Resource: MetaPhlAn (RRID:SCR_004915)
  
  Curator: @ethanbadger
  
  SciCrunch record: RRID:SCR_004915
  
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  RRID:SCR_004915 RRIDCUR:Validated
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academic.oup.com/gigascience/article/8/4/giz020/5426565
Nov 2018
academic.oup.com academic.oup.com

ASaiM: a Galaxy-based framework to analyze microbiota data

1
1. scibot 05 Nov 2018
  
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  RRID:SCR_004915
  
  Curator: @evieth
  
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  RRID:SCR_004915 RRIDCUR:Validated
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academic.oup.com/gigascience/article/7/6/giy057/5001424
Nov 2017
academic.oup.com academic.oup.com

Untitled document

1
1. scibot 08 Nov 2017
  
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  RRID:SCR_004915
  
  Curator: @patriciaelyse_
  
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  (MetaPhlAn, RRID:SCR_004915)
  
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  RRID:SCR_004915 RRIDCUR:Validated
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academic.oup.com/gigascience/article/6/7/1/3867068/Comprehensive-analysis-of-microorganisms
www.sciencedirect.com www.sciencedirect.com

Bread Affects Clinical Parameters and Induces Gut Microbiome-Associated Personal Glycemic Responses

1
1. scibot 08 Nov 2017
  
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  SCR_004915
  
  Curator: @chewbeccax
  
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  RRID:SCR_004915 RRIDCUR:Validated
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sciencedirect.com/science/article/pii/S1550413117302887
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

A conserved bacterial protein induces pancreatic beta cell expansion during zebrafish development

1
1. scibot 08 Nov 2017
  
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  SCR_004915
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5154760/