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Cohesive modules of engraftment in fecal microbiota transplantation

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1. scibot 20 May 2026
  
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  DOI: 10.1016/j.isci.2026.116025
  
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sciencedirect.com/science/article/pii/S2589004226014008
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Dietary soy shapes the microbiome to induce commensal-specific T follicular helper cells and IgA production

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1. scibot 20 May 2026
  
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  DOI: 10.1016/j.immuni.2026.04.013
  
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sciencedirect.com/science/article/pii/S1074761326001755
May 2026
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Integrative analysis of the mouse cecal microbiome across diet, age, and weight in the diverse BXD population

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1. scibot 15 May 2026
  
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  DOI: 10.1186/s40168-026-02369-x
  
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link.springer.com/article/10.1186/s40168-026-02369-x
Apr 2026
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Faecalibacterium prausnitzii, depleted in the Parkinson’s disease microbiome, improves motor deficits in α-synuclein overexpressing mice

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1. scibot 16 Apr 2026
  
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  DOI: 10.1038/s41531-026-01287-x
  
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pmc.ncbi.nlm.nih.gov/articles/PMC13077053/
Feb 2026
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Stability and Variability of the Human Fecal Microbiome Over Two Years in the Multiethnic Cohort Study: A Metagenomic Analysis

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1. scibot 04 Feb 2026
  
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  DOI: 10.1158/1055-9965.EPI-24-1770
  
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pmc.ncbi.nlm.nih.gov/articles/PMC12247528/
Aug 2025
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Veillonella intestinal colonization promotes C. difficile infection in Crohn’s disease

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1. scibot 26 Aug 2025
  
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  DOI: 10.1016/j.chom.2025.07.019
  
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sciencedirect.com/science/article/pii/S1931312825002914
Jun 2025
52.53.155.43 52.53.155.43

ycaf090-html.html

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1. scibot 11 Jun 2025
  
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  DOI: 10.1093/ismeco/ycaf090
  
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52.53.155.43/78af6db3eb536331564207a201ca5c6a2375d3ac/ycaf090-html.html
Mar 2025
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Healthy microbiome—moving towards functional interpretation

1
1. scibot 27 Mar 2025
  
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  DOI: 10.1093/gigascience/giaf015
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11927397/
www.nature.com www.nature.com

Comparative analysis of Parkinson’s and inflammatory bowel disease gut microbiomes reveals shared butyrate-producing bacteria depletion

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1. scibot 23 Mar 2025
  
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  DOI: 10.1038/s41531-025-00894-4
  
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nature.com/articles/s41531-025-00894-4
Jul 2024
www.cell.com www.cell.com

Proteobacteria impair anti-tumor immunity in the omentum by consuming arginine

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1. scibot 18 Jul 2024
  
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  DOI: 10.1016/j.chom.2024.06.003
  
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cell.com/cell-host-microbe/abstract/S1931-3128(24)00197-5
Jun 2024
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

LRTK: a platform agnostic toolkit for linked-read analysis of both human genome and metagenome

1
1. scibot 22 Jun 2024
  
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  RRID:SCR_004
  
  DOI: 10.1093/gigascience/giae028
  
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  RRIDCUR:Unresolved RRID:SCR_004915 DOI:10.1093/gigascience/giae028
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ncbi.nlm.nih.gov/pmc/articles/PMC11170215/
Mar 2024
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Peripheral neuronal activation shapes the microbiome and alters gut physiology

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1. scibot 22 Mar 2024
  
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  DOI: 10.1016/j.celrep.2024.113953
  
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sciencedirect.com/science/article/pii/S221112472400281X
Mar 2023
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Linking gut microbiome to bone mineral density: a shotgun metagenomic dataset from 361 elderly women

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1. scibot 02 Mar 2023
  
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  DOI: 10.46471/gigabyte.12
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9631969/
Jan 2023
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Enrichment of oral-derived bacteria in inflamed colorectal tumors and distinct associations of Fusobacterium in the mesenchymal subtype

1
1. scibot 27 Jan 2023
  
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  DOI: 10.1016/j.xcrm.2023.100920
  
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sciencedirect.com/science/article/pii/S2666379123000058
Apr 2022
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Acute and persistent effects of commonly used antibiotics on the gut microbiome and resistome in healthy adults

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1. scibot 14 Apr 2022
  
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  DOI: 10.1016/j.celrep.2022.110649
  
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sciencedirect.com/science/article/pii/S2211124722004016
Aug 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Untitled document

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1. scibot 13 Aug 2021
  
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  RRID:SCR_004915
  
  DOI: 10.1093/gigascience/giz020
  
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ncbi.nlm.nih.gov/pmc/articles/PMC6446249/
academic.oup.com academic.oup.com

Untitled document

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1. scibot 08 Aug 2021
  
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  DOI: 10.1093/gigascience/gix044
  
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academic.oup.com/gigascience/article/6/7/1/3867068
Jul 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The Crohn’s disease polymorphism, ATG16L1 T300A, alters the gut microbiota and enhances the local Th1/Th17 response

1
1. scibot 31 Jul 2021
  
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  RRID:SCR_004915
  
  DOI: 10.7554/eLife.39982
  
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  Curator: @evieth
  
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  RRID:SCR_004915 RRIDCUR:Validated
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ncbi.nlm.nih.gov/pmc/articles/PMC6342529/
febs.onlinelibrary.wiley.com febs.onlinelibrary.wiley.com

Compositional and functional features of the female premenopausal and postmenopausal gut microbiota

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1. scibot 29 Jul 2021
  
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  Metaphlan
  
  DOI: 10.1002/1873-3468.13527
  
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  Curator: @Naa003
  
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  RRID:SCR_004915 RRIDCUR:Missing
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febs.onlinelibrary.wiley.com/doi/full/10.1002/1873-3468.13527
May 2021
clincancerres.aacrjournals.org clincancerres.aacrjournals.org

Microbiome Analysis of More Than 2,000 NHS Bowel Cancer Screening Programme Samples Shows the Potential to Improve Screening Accuracy

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1. scibot 10 May 2021
  
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  DOI: 10.1158/1078-0432.CCR-20-3807
  
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clincancerres.aacrjournals.org/content/27/8/2246
Apr 2021
www.sciencedirect.com www.sciencedirect.com

Potential role of indolelactate and butyrate in multiple sclerosis revealed by integrated microbiome-metabolome analysis

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1. scibot 21 Apr 2021
  
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  DOI: 10.1016/j.xcrm.2021.100246
  
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sciencedirect.com/science/article/pii/S2666379121000628
Oct 2020
www.sciencedirect.com www.sciencedirect.com

Comparing Circadian Rhythmicity in the Human Gut Microbiome

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1. scibot 31 Oct 2020
  
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  DOI: 10.1016/j.xpro.2020.100148
  
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sciencedirect.com/science/article/pii/S2666166720301350
Jan 2020
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The Crohn’s disease polymorphism, ATG16L1 T300A, alters the gut microbiota and enhances the local Th1/Th17 response

1
1. scibot 13 Jan 2020
  
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  RRID:SCR_004915
  
  DOI: 10.7554/eLife.39982
  
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ncbi.nlm.nih.gov/pmc/articles/PMC6342529/
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Untitled document

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1. scibot 13 Jan 2020
  
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  RRID:SCR_004915
  
  DOI: 10.1016/j.celrep.2019.01.091
  
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  Curator: @ethanbadger
  
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  RRID:SCR_004915 RRIDCUR:Validated
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sciencedirect.com/science/article/pii/S2211124719301287
academic.oup.com academic.oup.com

Untitled document

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1. scibot 12 Jan 2020
  
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  RRID:SCR_004915
  
  DOI: 10.1093/gigascience/giz020
  
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  Curator: @ethanbadger
  
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academic.oup.com/gigascience/article/8/4/giz020/5426565
Nov 2018
academic.oup.com academic.oup.com

ASaiM: a Galaxy-based framework to analyze microbiota data

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1. scibot 05 Nov 2018
  
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  Curator: @evieth
  
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academic.oup.com/gigascience/article/7/6/giy057/5001424
Nov 2017
academic.oup.com academic.oup.com

Untitled document

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1. scibot 08 Nov 2017
  
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  Curator: @patriciaelyse_
  
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academic.oup.com/gigascience/article/6/7/1/3867068/Comprehensive-analysis-of-microorganisms
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Bread Affects Clinical Parameters and Induces Gut Microbiome-Associated Personal Glycemic Responses

1
1. scibot 08 Nov 2017
  
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  SCR_004915
  
  Curator: @chewbeccax
  
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sciencedirect.com/science/article/pii/S1550413117302887
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

A conserved bacterial protein induces pancreatic beta cell expansion during zebrafish development

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1. scibot 08 Nov 2017
  
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ncbi.nlm.nih.gov/pmc/articles/PMC5154760/