19 Matching Annotations
  1. Jun 2024
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    LRTK: a platform agnostic toolkit for linked-read analysis of both human genome and metagenome
    1
    1. scibot 22 Jun 2024
      RRID:SCR_004

      DOI: 10.1093/gigascience/giae028

      Resource: MetaPhlAn (RRID:SCR_004915)

      Curator: @evieth

      SciCrunch record: RRID:SCR_004915

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      RRIDCUR:Unresolved RRID:SCR_004915 DOI:10.1093/gigascience/giae028
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    ncbi.nlm.nih.gov/pmc/articles/PMC11170215/
  3. Mar 2024
  4. www.sciencedirect.com www.sciencedirect.com
    Peripheral neuronal activation shapes the microbiome and alters gut physiology
    1
    1. scibot 22 Mar 2024
      SCR_004915

      DOI: 10.1016/j.celrep.2024.113953

      Resource: MetaPhlAn (RRID:SCR_004915)

      Curator: @scibot

      SciCrunch record: RRID:SCR_004915

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      RRID:SCR_004915
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    sciencedirect.com/science/article/pii/S221112472400281X
  5. Mar 2023
  6. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Linking gut microbiome to bone mineral density: a shotgun metagenomic dataset from 361 elderly women
    1
    1. scibot 02 Mar 2023
      RRID:SCR_004915

      DOI: 10.46471/gigabyte.12

      Resource: MetaPhlAn (RRID:SCR_004915)

      Curator: @scibot

      SciCrunch record: RRID:SCR_004915

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      RRID:SCR_004915
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    ncbi.nlm.nih.gov/pmc/articles/PMC9631969/
  7. Jan 2023
  8. www.sciencedirect.com www.sciencedirect.com
    Enrichment of oral-derived bacteria in inflamed colorectal tumors and distinct associations of Fusobacterium in the mesenchymal subtype
    1
    1. scibot 27 Jan 2023
      RRID:SCR_004915

      DOI: 10.1016/j.xcrm.2023.100920

      Resource: MetaPhlAn (RRID:SCR_004915)

      Curator: @scibot

      SciCrunch record: RRID:SCR_004915

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      RRID:SCR_004915
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    sciencedirect.com/science/article/pii/S2666379123000058
  9. Apr 2022
  10. www.sciencedirect.com www.sciencedirect.com
    Acute and persistent effects of commonly used antibiotics on the gut microbiome and resistome in healthy adults
    1
    1. scibot 14 Apr 2022
      RRID:SCR_004915

      DOI: 10.1016/j.celrep.2022.110649

      Resource: MetaPhlAn (RRID:SCR_004915)

      Curator: @scibot

      SciCrunch record: RRID:SCR_004915

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      RRID:SCR_004915
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    sciencedirect.com/science/article/pii/S2211124722004016
  11. Aug 2021
  12. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
    1
    1. scibot 13 Aug 2021
      RRID:SCR_004915

      DOI: 10.1093/gigascience/giz020

      Resource: MetaPhlAn (RRID:SCR_004915)

      Curator: @scibot

      SciCrunch record: RRID:SCR_004915

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      RRID:SCR_004915
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    ncbi.nlm.nih.gov/pmc/articles/PMC6446249/
  13. academic.oup.com academic.oup.com
    Untitled document
    1
    1. scibot 08 Aug 2021
      RRID:SCR_004915

      DOI: 10.1093/gigascience/gix044

      Resource: MetaPhlAn (RRID:SCR_004915)

      Curator: @scibot

      SciCrunch record: RRID:SCR_004915

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      RRID:SCR_004915
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    academic.oup.com/gigascience/article/6/7/1/3867068
  14. Jul 2021
  15. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Crohn’s disease polymorphism, ATG16L1 T300A, alters the gut microbiota and enhances the local Th1/Th17 response
    1
    1. scibot 31 Jul 2021
      RRID:SCR_004915

      DOI: 10.7554/eLife.39982

      Resource: MetaPhlAn (RRID:SCR_004915)

      Curator: @evieth

      SciCrunch record: RRID:SCR_004915

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      RRID:SCR_004915 RRIDCUR:Validated
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    ncbi.nlm.nih.gov/pmc/articles/PMC6342529/
  16. febs.onlinelibrary.wiley.com febs.onlinelibrary.wiley.com
    Compositional and functional features of the female premenopausal and postmenopausal gut microbiota
    1
    1. scibot 29 Jul 2021
      Metaphlan

      DOI: 10.1002/1873-3468.13527

      Resource: MetaPhlAn (RRID:SCR_004915)

      Curator: @Naa003

      SciCrunch record: RRID:SCR_004915

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      RRID:SCR_004915 RRIDCUR:Missing
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    febs.onlinelibrary.wiley.com/doi/full/10.1002/1873-3468.13527
  17. May 2021
  18. clincancerres.aacrjournals.org clincancerres.aacrjournals.org
    Microbiome Analysis of More Than 2,000 NHS Bowel Cancer Screening Programme Samples Shows the Potential to Improve Screening Accuracy
    1
    1. scibot 10 May 2021
      RRID:SCR_004915

      DOI: 10.1158/1078-0432.CCR-20-3807

      Resource: MetaPhlAn (RRID:SCR_004915)

      Curator: @scibot

      SciCrunch record: RRID:SCR_004915

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      RRID:SCR_004915
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    clincancerres.aacrjournals.org/content/27/8/2246
  19. Apr 2021
  20. www.sciencedirect.com www.sciencedirect.com
    Potential role of indolelactate and butyrate in multiple sclerosis revealed by integrated microbiome-metabolome analysis
    1
    1. scibot 21 Apr 2021
      RRID:SCR_004915

      DOI: 10.1016/j.xcrm.2021.100246

      Resource: MetaPhlAn (RRID:SCR_004915)

      Curator: @Naa003

      SciCrunch record: RRID:SCR_004915

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      RRIDCUR:Validated RRID:SCR_004915
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    sciencedirect.com/science/article/pii/S2666379121000628
  21. Oct 2020
  22. www.sciencedirect.com www.sciencedirect.com
    Comparing Circadian Rhythmicity in the Human Gut Microbiome
    1
    1. scibot 31 Oct 2020
      RRID:SCR_004915

      DOI: 10.1016/j.xpro.2020.100148

      Resource: MetaPhlAn (RRID:SCR_004915)

      Curator: @Naa003

      SciCrunch record: RRID:SCR_004915

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      RRIDCUR:Validated RRID:SCR_004915
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    sciencedirect.com/science/article/pii/S2666166720301350
  23. Jan 2020
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Crohn’s disease polymorphism, ATG16L1 T300A, alters the gut microbiota and enhances the local Th1/Th17 response
    1
    1. scibot 13 Jan 2020
      RRID:SCR_004915

      DOI: 10.7554/eLife.39982

      Resource: MetaPhlAn (RRID:SCR_004915)

      Curator: @evieth

      SciCrunch record: RRID:SCR_004915

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      RRID:SCR_004915 RRIDCUR:Validated
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    ncbi.nlm.nih.gov/pmc/articles/PMC6342529/
  25. www.sciencedirect.com www.sciencedirect.com
    Untitled document
    1
    1. scibot 13 Jan 2020
      RRID:SCR_004915

      DOI: 10.1016/j.celrep.2019.01.091

      Resource: MetaPhlAn (RRID:SCR_004915)

      Curator: @ethanbadger

      SciCrunch record: RRID:SCR_004915

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      RRID:SCR_004915 RRIDCUR:Validated
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    sciencedirect.com/science/article/pii/S2211124719301287
  26. academic.oup.com academic.oup.com
    Untitled document
    1
    1. scibot 12 Jan 2020
      RRID:SCR_004915

      DOI: 10.1093/gigascience/giz020

      Resource: MetaPhlAn (RRID:SCR_004915)

      Curator: @ethanbadger

      SciCrunch record: RRID:SCR_004915

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      RRID:SCR_004915 RRIDCUR:Validated
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    academic.oup.com/gigascience/article/8/4/giz020/5426565
  27. Nov 2018
  28. academic.oup.com academic.oup.com
    ASaiM: a Galaxy-based framework to analyze microbiota data
    1
    1. scibot 05 Nov 2018
      RRID:SCR_004915

      Curator: @evieth

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      (MetaPhlAn, RRID:SCR_004915)

      SciCrunch record: RRID:SCR_004915

      Alternate resolvers: SciCrunch xml N2T identifiers.org

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      RRID:SCR_004915 RRIDCUR:Validated
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    academic.oup.com/gigascience/article/7/6/giy057/5001424
  29. Nov 2017
  30. academic.oup.com academic.oup.com
    Untitled document
    1
    1. scibot 08 Nov 2017
      RRID:SCR_004915

      Curator: @patriciaelyse_

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      (MetaPhlAn, RRID:SCR_004915)

      SciCrunch record: RRID:SCR_004915

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      RRID:SCR_004915 RRIDCUR:Validated
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    academic.oup.com/gigascience/article/6/7/1/3867068/Comprehensive-analysis-of-microorganisms
  31. www.sciencedirect.com www.sciencedirect.com
    Bread Affects Clinical Parameters and Induces Gut Microbiome-Associated Personal Glycemic Responses
    1
    1. scibot 08 Nov 2017
      SCR_004915

      Curator: @chewbeccax

      Resource used:

      (MetaPhlAn, RRID:SCR_004915)

      SciCrunch record: RRID:SCR_004915

      Alternate resolvers: SciCrunch xml N2T identifiers.org

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      RRID:SCR_004915 RRIDCUR:Validated
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    sciencedirect.com/science/article/pii/S1550413117302887
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A conserved bacterial protein induces pancreatic beta cell expansion during zebrafish development
    1
    1. scibot 08 Nov 2017
      SCR_004915

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      (MetaPhlAn, RRID:SCR_004915)

      SciCrunch record: RRID:SCR_004915

      Alternate resolvers: SciCrunch xml N2T identifiers.org

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      RRID:SCR_004915
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    ncbi.nlm.nih.gov/pmc/articles/PMC5154760/