507 Matching Annotations
  1. Last 7 days
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    De novo transcriptome assembly and genome annotation of the fat-tailed dunnart (Sminthopsis crassicaudata)
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    1. scibot 17 May 2024
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      DOI: 10.46471/gigabyte.118

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    ncbi.nlm.nih.gov/pmc/articles/PMC11091235/
  3. May 2024
  4. www.sciencedirect.com www.sciencedirect.com
    The MYCN oncoprotein is an RNA-binding accessory factor of the nuclear exosome targeting complex
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    1. scibot 07 May 2024
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      DOI: 10.1016/j.molcel.2024.04.007

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    sciencedirect.com/science/article/pii/S1097276524002855
  5. Apr 2024
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    EP300/CREBBP acetyltransferase inhibition limits steroid receptor and FOXA1 signaling in prostate cancer cells
    1
    1. scibot 10 Apr 2024
      RRID:SCR_005476

      DOI: 10.1007/s00018-024-05209-z

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    link.springer.com/article/10.1007/s00018-024-05209-z
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    Telomere dysfunction alters intestinal stem cell dynamics to promote cancer
    1
    1. scibot 04 Apr 2024
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      DOI: 10.1016/j.devcel.2024.03.020

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    sciencedirect.com/science/article/pii/S1534580724001886
  8. Feb 2024
  9. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The EstroGene database reveals diverse temporal, context-dependent, and bidirectional estrogen receptor regulomes in breast cancer
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    1. scibot 16 Feb 2024
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      DOI: 10.1158/0008-5472.CAN-23-0539

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    ncbi.nlm.nih.gov/pmc/articles/PMC10527051/
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    Genome-wide p63-target gene analyses reveal TAp63/NRF2-dependent oxidative stress responses
    1
    1. scibot 03 Feb 2024
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      DOI: 10.1158/2767-9764.CRC-23-0358

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    ncbi.nlm.nih.gov/pmc/articles/PMC10832605/
  11. Jan 2024
  12. faseb.onlinelibrary.wiley.com faseb.onlinelibrary.wiley.com
    Genomic exploration of the targets of FOXL2 and ESR2 unveils their implication in cell migration, invasion, and adhesion
    1
    1. scibot 20 Jan 2024
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      DOI: 10.1096/fj.202002444R

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    faseb.onlinelibrary.wiley.com/doi/10.1096/fj.202002444R
  13. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Glucose Deprivation Promotes Pseudohypoxia and Dedifferentiation in Lung Adenocarcinoma
    1
    1. scibot 20 Jan 2024
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      DOI: 10.1158/0008-5472.CAN-23-1148

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    ncbi.nlm.nih.gov/pmc/articles/PMC10790128/
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    PRDM3/16 Regulate Chromatin Accessibility Required for NKX2-1 Mediated Alveolar Epithelial Differentiation and Function
    1
    1. scibot 20 Jan 2024
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      DOI: 10.1101/2023.12.20.570481

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    ncbi.nlm.nih.gov/pmc/articles/PMC10769259/
  15. Dec 2023
  16. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multiple independent losses of the biosynthetic pathway for two tropane alkaloids in the Solanaceae family
    1
    1. scibot 22 Dec 2023
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      DOI: 10.1038/s41467-023-44246-3

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    ncbi.nlm.nih.gov/pmc/articles/PMC10730914/
  17. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Blimp-1 and c-Maf regulate  Il10 and negatively regulate common and unique proinflammatory gene networks in IL-12 plus IL-27-driven T helper-1 cells
    1
    1. scibot 13 Dec 2023
      RRID:SCR_005476

      DOI: 10.12688/wellcomeopenres.19680.2

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    ncbi.nlm.nih.gov/pmc/articles/PMC10709690/
  18. Nov 2023
  19. www.sciencedirect.com www.sciencedirect.com
    Debugging and consolidating multiple synthetic chromosomes reveals combinatorial genetic interactions
    1
    1. scibot 28 Nov 2023
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      DOI: 10.1016/j.cell.2023.09.025

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    sciencedirect.com/science/article/pii/S0092867423010796
  20. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    MicroRNA-218 instructs proper assembly of hippocampal networks
    1
    1. scibot 15 Nov 2023
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      DOI: 10.7554/eLife.82729

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    ncbi.nlm.nih.gov/pmc/articles/PMC10637775/
  21. wellcomeopenresearch.org wellcomeopenresearch.org
    Blimp-1 and c-Maf regulate Il10 and negatively regulate common and unique proinflammatory gene networks in IL-12 plus IL-27-driven T helper-1 cells
    1
    1. scibot 10 Nov 2023
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      DOI: 10.12688/wellcomeopenres.19680.1

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    wellcomeopenresearch.org/articles/8-403/v1
  22. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Divergence of TORC1-mediated stress response leads to novel acquired stress resistance in a pathogenic yeast
    1
    1. scibot 09 Nov 2023
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      DOI: 10.1371/journal.ppat.1011748

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    ncbi.nlm.nih.gov/pmc/articles/PMC10621968/
  23. Oct 2023
  24. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Super-enhancer hijacking drives ectopic expression of hedgehog pathway ligands in meningiomas
    1
    1. scibot 12 Oct 2023
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      DOI: 10.1038/s41467-023-41926-y

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    ncbi.nlm.nih.gov/pmc/articles/PMC10560290/
  25. Sep 2023
  26. www.sciencedirect.com www.sciencedirect.com
    Characterization of the male-specific region containing the candidate sex-determining gene in Amur catfish (Silurus asotus) using third-generation- and pool-sequencing data
    1
    1. scibot 27 Sep 2023
      RRID:SCR_005476

      DOI: 10.1016/j.ijbiomac.2023.125908

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    sciencedirect.com/science/article/pii/S0141813023028039
  27. Aug 2023
  28. www.sciencedirect.com www.sciencedirect.com
    The SMC5/6 complex compacts and silences unintegrated HIV-1 DNA and is antagonized by Vpr
    1
    1. scibot 23 Aug 2023
      RRID:SCR_005476

      DOI: 10.1016/j.chom.2021.03.001

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    sciencedirect.com/science/article/pii/S1931312821001013
  29. Jul 2023
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identification of sex chromosomes and primary sex ratio in the small hive beetle, a worldwide parasite of honey bees
    1
    1. scibot 27 Jul 2023
      RRID:SCR_005476

      DOI: 10.1093/gigascience/giad056

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    ncbi.nlm.nih.gov/pmc/articles/PMC10367126/
  31. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Prenatal Δ9-tetrahydrocannabinol exposure in males leads to motivational disturbances related to striatal epigenetic dysregulation
    1
    1. scibot 18 Jul 2023
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      DOI: 10.1016/j.biopsych.2021.09.017

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    ncbi.nlm.nih.gov/pmc/articles/PMC8957623/
  32. Jun 2023
  33. www.biorxiv.org www.biorxiv.org
    Divergence of TORC1-mediated Stress Response Leads to Novel Acquired Stress Resistance in a Pathogenic Yeast
    1
    1. scibot 26 Jun 2023
      RRID:SCR_005476

      DOI: 10.1101/2023.06.20.545716

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    biorxiv.org/content/10.1101/2023.06.20.545716v1
  34. www.sciencedirect.com www.sciencedirect.com
    5-Azacytidine- and retinoic-acid-induced reprogramming of DCCs into dormancy suppresses metastasis via restored TGF-β-SMAD4 signaling
    1
    1. scibot 02 Jun 2023
      RRID:SCR_005476

      DOI: 10.1016/j.celrep.2023.112560

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    sciencedirect.com/science/article/pii/S2211124723005715
  35. May 2023
  36. www.sciencedirect.com www.sciencedirect.com
    Mbnl2 loss alters novel context processing and impairs object recognition memory
    1
    1. scibot 14 May 2023
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      DOI: 10.1016/j.isci.2023.106732

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    sciencedirect.com/science/article/pii/S258900422300809X
  37. www.sciencedirect.com www.sciencedirect.com
    Functional interplay between Mediator and RSC chromatin remodeling complex controls nucleosome-depleted region maintenance at promoters
    1
    1. scibot 03 May 2023
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      DOI: 10.1016/j.celrep.2023.112465

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    sciencedirect.com/science/article/pii/S221112472300476X
  38. Apr 2023
  39. www.sciencedirect.com www.sciencedirect.com
    Insights into identifying resistance genes for cold and disease stresses through chromosome-level reference genome analyses of Poncirus polyandra
    1
    1. scibot 28 Apr 2023
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      DOI: 10.1016/j.ygeno.2023.110617

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    sciencedirect.com/science/article/pii/S0888754323000617
  40. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    SWI/SNF Blockade Disrupts PU.1-Directed Enhancer Programs in Normal Hematopoietic Cells and Acute Myeloid Leukemia
    1
    1. scibot 12 Apr 2023
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      DOI: 10.1158/0008-5472.CAN-22-2129

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    ncbi.nlm.nih.gov/pmc/articles/PMC10071820/
  41. Mar 2023
  42. www.sciencedirect.com www.sciencedirect.com
    A transcriptionally distinct subset of influenza-specific effector memory B cells predicts long-lived antibody responses to vaccination in humans
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    1. scibot 28 Mar 2023
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      DOI: 10.1016/j.immuni.2023.03.001

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    sciencedirect.com/science/article/pii/S1074761323000948
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    ViReMa: a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids
    1
    1. scibot 22 Mar 2023
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      DOI: 10.1093/gigascience/giad009

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    ncbi.nlm.nih.gov/pmc/articles/PMC10025937/
  44. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A reference genome for the critically endangered woylie, Bettongia penicillata ogilbyi
    1
    1. scibot 02 Mar 2023
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      DOI: 10.46471/gigabyte.35

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    ncbi.nlm.nih.gov/pmc/articles/PMC9650285/
  45. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The first Antechinus reference genome provides a resource for investigating the genetic basis of semelparity and age-related neuropathologies
    1
    1. scibot 02 Mar 2023
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      DOI: 10.46471/gigabyte.7

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    ncbi.nlm.nih.gov/pmc/articles/PMC9631953/
  46. Feb 2023
  47. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Loss of PBRM1 alters promoter histone modifications and activates ALDH1A1 to drive renal cell carcinoma
    1
    1. scibot 09 Feb 2023
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      DOI: 10.1158/1541-7786.MCR-21-1039

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    ncbi.nlm.nih.gov/pmc/articles/PMC9357026/
  48. Jan 2023
  49. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Transcriptomic and proteomic analyses provide insights into host adaptation of a bamboo-feeding aphid
    1
    1. scibot 28 Jan 2023
      RRID:SCR_005476

      DOI: 10.3389/fpls.2022.1098751

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    ncbi.nlm.nih.gov/pmc/articles/PMC9874943/
  50. Dec 2022
  51. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Prevalent and dynamic binding of the cell cycle checkpoint kinase Rad53 to gene promoters
    1
    1. scibot 30 Dec 2022
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      DOI: 10.7554/eLife.84320

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    ncbi.nlm.nih.gov/pmc/articles/PMC9797190/
  52. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Distinct Tumor Necrosis Factor Alpha Receptors Dictate Stem Cell Fitness Versus Lineage Output in Dnmt3a-Mutant Clonal Hematopoiesis
    1
    1. scibot 16 Dec 2022
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      DOI: 10.1158/2159-8290.CD-22-0086

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    ncbi.nlm.nih.gov/pmc/articles/PMC9716249/
  53. www.sciencedirect.com www.sciencedirect.com
    Chromosomal-level genome and multi-omics dataset provides new insights into leaf pigmentation in Acer palmatum
    1
    1. scibot 06 Dec 2022
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      DOI: 10.1016/j.ijbiomac.2022.11.303

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    sciencedirect.com/science/article/pii/S0141813022028689
  54. aacrjournals.org aacrjournals.org
    BAF complex maintains glioma stem cells in pediatric H3K27M-glioma
    1
    1. scibot 03 Dec 2022
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      DOI: 10.1158/2159-8290.CD-21-1491

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    aacrjournals.org/cancerdiscovery/article/12/12/2880/711164/BAF-Complex-Maintains-Glioma-Stem-Cells-in
  55. Nov 2022
  56. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    CIRCprimerXL: Convenient and High-Throughput PCR Primer Design for Circular RNA Quantification
    1
    1. scibot 03 Nov 2022
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      DOI: 10.3389/fbinf.2022.834655

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    ncbi.nlm.nih.gov/pmc/articles/PMC9580850/
  57. Oct 2022
  58. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    STAG2 expression is associated with adverse survival outcomes and regulates cell phenotype in muscle-invasive bladder cancer
    1
    1. scibot 26 Oct 2022
      RRID:SCR_005476

      DOI: 10.1158/2767-9764.crc-22-0155

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    ncbi.nlm.nih.gov/pmc/articles/PMC9583756/
  59. Sep 2022
  60. f1000research.com f1000research.com
    Circadian signatures of anterior hypothalamus in time-restricted feeding
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    1. scibot 30 Sep 2022
      RRID:SCR_005476

      DOI: 10.12688/f1000research.125368.1

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    f1000research.com/articles/11-1087
  61. Aug 2022
  62. www.sciencedirect.com www.sciencedirect.com
    Distinct silencer states generate epigenetic states of heterochromatin
    1
    1. scibot 30 Aug 2022
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      DOI: 10.1016/j.molcel.2022.08.002

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  63. www.sciencedirect.com www.sciencedirect.com
    Dual ontogeny of disease-associated microglia and disease inflammatory macrophages in aging and neurodegeneration
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      DOI: 10.1016/j.immuni.2022.07.004

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  64. Jul 2022
  65. bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com
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  66. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Anastrozole regulates fatty acid synthase in breast cancer
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      DOI: 10.1158/1535-7163.MCT-21-0509

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  67. Jun 2022
  68. 52.53.155.43 52.53.155.43
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      DOI: 10.1158/2159-8290.CD-21-1022

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  69. 52.53.155.43 52.53.155.43
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      DOI: 10.1158/1541-7786.mcr-21-1039

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  70. www.sciencedirect.com www.sciencedirect.com
    EED is required for mouse primordial germ cell differentiation in the embryonic gonad
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  71. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Global-run on sequencing identifies Gm11967 as an Akt-dependent long noncoding RNA involved in insulin sensitivity
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  72. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Oct4 differentially regulates chromatin opening and enhancer transcription in pluripotent stem cells
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      DOI: 10.7554/eLife.71533

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  73. May 2022
  74. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    DNA-PK promotes DNA end resection at DNA double strand breaks in G0 cells
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  75. Apr 2022
  76. www.sciencedirect.com www.sciencedirect.com
    An optimized 4C-seq protocol based on cistrome and epigenome data in the mouse RAW264.7 macrophage cell line
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    The gut environment regulates bacterial gene expression which modulates susceptibility to bacteriophage infection
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      DOI: 10.1016/j.chom.2022.03.014

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    sciencedirect.com/science/article/pii/S1931312822001445
  78. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Ribosome profiling of porcine reproductive and respiratory syndrome virus reveals novel features of viral gene expression
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  79. Mar 2022
  80. aacrjournals.org aacrjournals.org
    EP300 Selectively Controls the Enhancer Landscape of MYCN-Amplified Neuroblastoma
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      DOI: 10.1158/2159-8290.CD-21-0385

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    aacrjournals.org/cancerdiscovery/article/12/3/730/681918/EP300-Selectively-Controls-the-Enhancer-Landscape
  81. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    High-quality assembly of the reference genome for scarlet sage, Salvia splendens, an economically important ornamental plant
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      DOI: 10.1093/gigascience/giy068

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    ncbi.nlm.nih.gov/labs/pmc/articles/PMC6030905/
  82. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Maelstrom functions in the production of Siwi-piRISC capable of regulating transposons in Bombyx germ cells
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      DOI: 10.1016/j.isci.2022.103914

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    ncbi.nlm.nih.gov/pmc/articles/PMC8881725/
  83. Feb 2022
  84. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genetic Liability for Internalizing Versus Externalizing Behavior Manifests in the Developing and Adult Hippocampus: Insight From a Meta-analysis of Transcriptional Profiling Studies in a Selectively Bred Rat Model
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      DOI: 10.1016/j.biopsych.2020.05.024

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  85. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Histone H1 prevents non-CG methylation-mediated small RNA biogenesis in Arabidopsis heterochromatin
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      DOI: 10.7554/eLife.72676

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  86. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Maternal diet-induced obesity during pregnancy alters lipid supply to mouse E18.5 fetuses and changes the cardiac tissue lipidome in a sex-dependent manner
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      DOI: 10.7554/eLife.69078

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    ncbi.nlm.nih.gov/pmc/articles/PMC8794468/
  87. Jan 2022
  88. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Modeling uniquely human gene regulatory function via targeted humanization of the mouse genome
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      DOI: 10.1038/s41467-021-27899-w

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  89. Dec 2021
  90. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    PEGS: An efficient tool for gene set enrichment within defined sets of genomic intervals
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      DOI: 10.12688/f1000research.53926.2

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    ncbi.nlm.nih.gov/pmc/articles/PMC8406447/
  91. academic.oup.com academic.oup.com
    Highly accurate whole-genome imputation of SARS-CoV-2 from partial or low-quality sequences
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      DOI: 10.1093/gigascience/giab078

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    academic.oup.com/gigascience/article/10/12/giab078/6448505
  92. www.sciencedirect.com www.sciencedirect.com
    Pre-existing chromatin accessibility and gene expression differences among naive CD4+ T cells influence effector potential
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      DOI: 10.1016/j.celrep.2021.110064

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    sciencedirect.com/science/article/pii/S2211124721015503
  93. Nov 2021
  94. academic.oup.com academic.oup.com
    De novo screening of disease-resistant genes from the chromosome-level genome of rare minnow using CRISPR-cas9 random mutation
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      DOI: 10.1093/gigascience/giab075

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  95. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Sequence features of retrotransposons allow for epigenetic variability
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      DOI: 10.7554/eLife.71104

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  96. www.sciencedirect.com www.sciencedirect.com
    Acute depletion of the ARID1A subunit of SWI/SNF complexes reveals distinct pathways for activation and repression of transcription
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    sciencedirect.com/science/article/pii/S2211124721014169
  97. Oct 2021
  98. www.sciencedirect.com www.sciencedirect.com
    Conserved heterodimeric GTPase Rbg1/Tma46 promotes efficient translation in eukaryotic cells
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      DOI: 10.1016/j.celrep.2021.109877

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  99. bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com
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      DOI: 10.1002/prp2.749

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    bpspubs.onlinelibrary.wiley.com/doi/10.1002/prp2.749
  100. www.nature.com www.nature.com
    Comparative cellular analysis of motor cortex in human, marmoset and mouse
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      DOI: 10.1038/s41586-021-03465-8

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  101. www.sciencedirect.com www.sciencedirect.com
    PIWI-mediated control of tissue-specific transposons is essential for somatic cell differentiation
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      DOI: 10.1016/j.celrep.2021.109776

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  102. www.sciencedirect.com www.sciencedirect.com
    Acrylamide modulates the mouse epididymal proteome to drive alterations in the sperm small non-coding RNA profile and dysregulate embryo development
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      DOI: 10.1016/j.celrep.2021.109787

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  103. www.sciencedirect.com www.sciencedirect.com
    Spt4 facilitates the movement of RNA polymerase II through the +2 nucleosomal barrier
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      DOI: 10.1016/j.celrep.2021.109755

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  104. Sep 2021
  105. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A nascent polypeptide sequence modulates DnaA translation elongation in response to nutrient availability
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      DOI: 10.7554/eLife.71611

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  106. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    LIN37-DREAM prevents DNA end resection and homologous recombination at DNA double-strand breaks in quiescent cells
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      DOI: 10.7554/eLife.68466

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  107. www.sciencedirect.com www.sciencedirect.com
    Discovery of synthetic lethal and tumor suppressor paralog pairs in the human genome
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  108. Aug 2021
  109. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Nascent transcript and single-cell RNA-seq analysis defines the mechanism of action of the LSD1 inhibitor INCB059872 in myeloid leukemia
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      DOI: 10.1016/j.gene.2020.144758

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  110. www.sciencedirect.com www.sciencedirect.com
    Cardiac dysfunction affects eye development and vision by reducing supply of lipids in fish
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      DOI: 10.1016/j.scitotenv.2021.149460

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  111. www.nature.com www.nature.com
    Genome-wide and sister chromatid-resolved profiling of protein occupancy in replicated chromatin with ChOR-seq and SCAR-seq
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      DOI: 10.1038/s41596-021-00585-3

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  112. www.sciencedirect.com www.sciencedirect.com
    A composite DNA element that functions as a maintainer required for epigenetic inheritance of heterochromatin
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      DOI: 10.1016/j.molcel.2021.07.017

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    Heterochromatin-dependent transcription of satellite DNAs in the Drosophila melanogaster female germline
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      DOI: 10.7554/eLife.62375

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  158. www.mdpi.com www.mdpi.com
    Role of MYC-miR-29-B7-H3 in Medulloblastoma Growth and Angiogenesis
    1
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  159. www.nature.com www.nature.com
    Intracellular Zn 2+ transients modulate global gene expression in dissociated rat hippocampal neurons
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  160. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Genetic interactions of G-quadruplexes in humans
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  161. academic.oup.com academic.oup.com
    Identification of Betamethasone-Regulated Target Genes and Cell Pathways in Fetal Rat Lung Mesenchymal Fibroblasts
    1
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      Bowtie

      DOI: 10.1210/en.2018-01071

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  162. www.sciencedirect.com www.sciencedirect.com
    AGO CLIP Reveals an Activated Network for Acute Regulation of Brain Glutamate Homeostasis in Ischemic Stroke
    1
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  163. diabetes.diabetesjournals.org diabetes.diabetesjournals.org
    HLA Class II Antigen Processing and Presentation Pathway Components Demonstrated by Transcriptome and Protein Analyses of Islet β-Cells From Donors With Type 1 Diabetes
    1
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  164. cancerres.aacrjournals.org cancerres.aacrjournals.org
    Enhancer Domains in Gastrointestinal Stromal Tumor Regulate KIT Expression and Are Targetable by BET Bromodomain Inhibition
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      Bowtie2

      DOI: 10.1158/0008-5472.CAN-18-1888

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    An Atlas of Human Glycosylation Pathways Enables Display of the Human Glycome by Gene Engineered Cells
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      Bowtie2

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  166. elifesciences.org elifesciences.org
    Natural changes in light interact with circadian regulation at promoters to control gene expression in cyanobacteria
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  167. academic.oup.com academic.oup.com
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      RRID:SCR_005476

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    Maser: one-stop platform for NGS big data from analysis to visualization
    2
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      SCR_005476

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  169. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  170. www.eneuro.org www.eneuro.org
    Identification of Immediate Early Genes in the Nervous System of Snail Helix lucorum
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  171. elifesciences.org elifesciences.org
    Analysis of the genomic architecture of a complex trait locus in hypertensive rat models links Tmem63c to kidney damage
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  172. academic.oup.com academic.oup.com
    Sex-Biased Gene Expression and Dosage Compensation on the Artemia franciscana Z-Chromosome
    1
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      Bowtie2

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  173. www.sciencedirect.com www.sciencedirect.com
    Mapping the Global Chromatin Connectivity Network for Sox2 Function in Neural Stem Cell Maintenance
    2
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      Bowtie version 1.1.0 (for H3K27ac/H3K4me1 ChIPseq)

      DOI: 10.1016/j.stem.2019.02.004

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      Bowtie version 0.12.5 (for SOX2 ChIPseq)

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    sciencedirect.com/science/article/pii/S1934590919300463
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    Histone H3K9 Methyltransferase G9a in Oocytes Is Essential for Preimplantation Development but Dispensable for CG Methylation Protection
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      bowtie2 v2.2.9

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    PI3K Inhibition Activates SGK1 via a Feedback Loop to Promote Chromatin-Based Regulation of ER-Dependent Gene Expression
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      Bowtie2

      DOI: 10.1016/j.celrep.2019.02.111

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  176. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Analysis of long non‐coding RNA expression profiles in neonatal rats with hypoxic‐ischemic brain damage
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      DOI: 10.1111/jnc.14689

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    Targeted Disruption of HLA Genes via CRISPR-Cas9 Generates iPSCs with Enhanced Immune Compatibility
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  178. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Cooperation of PU.1 With IRF8 and NFATc1 Defines Chromatin Landscapes During RANKL‐Induced Osteoclastogenesis
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      DOI: 10.1002/jbmr.3689

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    Ribosomal Proteins Regulate MHC Class I Peptide Generation for Immunosurveillance
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      Bowtie

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    Iruka Eliminates Dysfunctional Argonaute by Selective Ubiquitination of Its Empty State
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      Bowtie

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  181. elifesciences.org elifesciences.org
    Untitled document
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      DOI: 10.7554/eLife.20375

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    Global Inhibition with Specific Activation: How p53 and MYC Redistribute the Transcriptome in the DNA Double-Strand Break Response
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      DOI: 10.1016/j.molcel.2017.07.028

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  183. www.frontiersin.org www.frontiersin.org
    Stem Cell Transcription Factor FoxO Controls Microbiome Resilience in Hydra
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      DOI: 10.3389/fmicb.2018.00629

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  184. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    DNA methylation directs genomic localization of Mbd2 and Mbd3 in embryonic stem cells
    4
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      SCR_005476

      DOI: 10.7554/eLife.21964

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      SCR_005476

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  185. www.sciencedirect.com www.sciencedirect.com
    C. elegans Heterochromatin Factor SET-32 Plays an Essential Role in Transgenerational Establishment of Nuclear RNAi-Mediated Epigenetic Silencing
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      Bowtie

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    foxF-1 Controls Specification of Non-body Wall Muscle and Phagocytic Cells in Planarians
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      bowtie

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    A CHAF1B-Dependent Molecular Switch in Hematopoiesis and Leukemia Pathogenesis
    1
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      DOI: 10.1016/j.ccell.2018.10.004

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    T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation
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      Bowtie

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    Defining T Cell States Associated with Response to Checkpoint Immunotherapy in Melanoma
    1
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      Bowtie

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    Genome-wide Rules of Nucleosome Phasing in Drosophila
    1
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      Bowtie

      DOI: 10.1016/j.molcel.2018.09.032

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    Succinate Dehydrogenase Supports Metabolic Repurposing of Mitochondria to Drive Inflammatory Macrophages
    2
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      Bowtie

      DOI: 10.1016/j.cell.2016.08.064

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      Bowtie

      DOI: 10.1016/j.cell.2016.08.064

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  192. www.sciencedirect.com www.sciencedirect.com
    Modeling Enzyme Processivity Reveals that RNA-Seq Libraries Are Biased in Characteristic and Correctable Ways
    2
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      Bowtie

      DOI: 10.1016/j.cels.2016.10.012

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      Bowtie

      DOI: 10.1016/j.cels.2016.10.012

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  193. www.sciencedirect.com www.sciencedirect.com
    RNA Binding to CBP Stimulates Histone Acetylation and Transcription
    2
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      Bowtie 1.1

      DOI: 10.1016/j.cell.2016.12.020

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      Bowtie 1.1

      DOI: 10.1016/j.cell.2016.12.020

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    sciencedirect.com/science/article/pii/S0092867416317366
  194. academic.oup.com academic.oup.com
    Chromosomal-level assembly of yellow catfish genome using third-generation DNA sequencing and Hi-C analysis
    1
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      RRID:SCR_005476

      DOI: 10.1093/gigascience/giy120

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    academic.oup.com/gigascience/article/7/11/giy120/5106933
  195. www.sciencedirect.com www.sciencedirect.com
    Ezh2 and Runx1 Mutations Collaborate to Initiate Lympho-Myeloid Leukemia in Early Thymic Progenitors
    1
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  196. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Transcriptome profiling of developing photoreceptor subtypes reveals candidate genes involved in avian photoreceptor diversification
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      OMICS_00653

      DOI: 10.1002/cne.23702

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      OMICS_00653

      DOI: 10.1002/cne.23702

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    onlinelibrary.wiley.com/doi/10.1002/cne.23702/full
  197. f1000research.com f1000research.com
    F1000Research Article: PEGS: An efficient tool for gene set enrichment within defined sets of genomic intervals.
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      DOI: 10.12688/f1000research.53926.1

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    f1000research.com/articles/10-570
  198. www.sciencedirect.com www.sciencedirect.com
    Targeted protein degradation reveals a direct role of SPT6 in RNAPII elongation and termination
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    1. scibot 09 Jul 2021
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      DOI: 10.1016/j.molcel.2021.06.016

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    sciencedirect.com/science/article/pii/S1097276521004962
  199. Jun 2021
  200. www.sciencedirect.com www.sciencedirect.com
    Pharmacologic modulation of RNA splicing enhances anti-tumor immunity
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      DOI: 10.1016/j.cell.2021.05.038

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    sciencedirect.com/science/article/pii/S0092867421006905
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    H3K27 demethylases are dispensable for activation of Polycomb-regulated injury response genes in peripheral nerve.
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      DOI: 10.1016/j.jbc.2021.100852

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  202. www.nature.com www.nature.com
    Pericentromeric Satellite III transcripts induce etoposide resistance
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      DOI: 10.1038/s41419-021-03810-9

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  203. May 2021
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    Altered oligodendroglia and astroglia in chronic traumatic encephalopathy
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      DOI: 10.1007/s00401-021-02322-2

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    Rapid and inexpensive preparation of genome-wide nucleosome footprints from model and non-model organisms
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      DOI: 10.1016/j.xpro.2021.100486

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  206. clincancerres.aacrjournals.org clincancerres.aacrjournals.org
    HAND1 and BARX1 act as transcriptional and anatomic determinants of malignancy in gastrointestinal stromal tumor
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      DOI: 10.1158/1078-0432.CCR-20-3538

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    Sequential CRISPR gene editing in human iPSCs charts the clonal evolution of myeloid leukemia and identifies early disease targets
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      DOI: 10.1016/j.stem.2021.01.011

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    Non-canonical Targets of HIF1a Impair Oligodendrocyte Progenitor Cell Function
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    An intrinsically disordered region-mediated confinement state contributes to the dynamics and function of transcription factors
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      DOI: 10.1016/j.molcel.2021.01.013

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    Repetitive Elements Trigger RIG-I-like Receptor Signaling that Regulates the Emergence of Hematopoietic Stem and Progenitor Cells
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    A Prion-like Domain in Transcription Factor EBF1 Promotes Phase Separation and Enables B Cell Programming of Progenitor Chromatin
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    Transcription factor chromatin profiling genome-wide using uliCUT&RUN in single cells and individual blastocysts
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      DOI: 10.1038/s41596-021-00516-2

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  213. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Defects in translation-dependent quality control pathways lead to convergent molecular and neurodevelopmental pathology
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      DOI: 10.7554/eLife.66904

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  214. Apr 2021
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    Recording of DNA-binding events reveals the importance of a repurposed Candida albicans regulatory network for gut commensalism
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      DOI: 10.1016/j.chom.2021.03.019

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    sciencedirect.com/science/article/pii/S1931312821001475
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    Acetylation of Cytidine Residues Boosts HIV-1 Gene Expression by Increasing Viral RNA Stability
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      DOI: 10.1016/j.chom.2020.05.011

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    sciencedirect.com/science/article/pii/S1931312820302936
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    5-hydroxymethylcytosine is dynamically regulated during forebrain organoid development and aberrantly altered in Alzheimer’s disease
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      DOI: 10.1016/j.celrep.2021.109042

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    sciencedirect.com/science/article/pii/S2211124721003582
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    Efficient RNA polymerase II pause release requires U2 snRNP function
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      DOI: 10.1016/j.molcel.2021.02.016

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    sciencedirect.com/science/article/pii/S109727652100126X
  219. www.cell.com www.cell.com
    IL6/STAT3 Signaling Hijacks Estrogen Receptor α Enhancers to Drive Breast Cancer Metastasis
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      DOI: 10.1016/j.ccell.2020.06.007

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    cell.com/cancer-cell/fulltext/S1535-6108(20)30311-1
  220. www.sciencedirect.com www.sciencedirect.com
    The SMC5/6 complex compacts and silences unintegrated HIV-1 DNA and is antagonized by Vpr
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      DOI: 10.1016/j.chom.2021.03.001

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  221. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evidence for additive and synergistic action of mammalian enhancers during cell fate determination
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    1. scibot 02 Apr 2021
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      DOI: 10.7554/eLife.65381

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    ncbi.nlm.nih.gov/pmc/articles/PMC8004103/
  222. Mar 2021
  223. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Human ORC/MCM density is low in active genes and correlates with replication time but does not delimit initiation zones
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      DOI: 10.7554/eLife.62161

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    ncbi.nlm.nih.gov/pmc/articles/PMC7993996/
  224. faseb.onlinelibrary.wiley.com faseb.onlinelibrary.wiley.com
    Genomic exploration of the targets of FOXL2 and ESR2 unveils their implication in cell migration, invasion, and adhesion
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      DOI: 10.1096/fj.202002444R

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    faseb.onlinelibrary.wiley.com/doi/10.1096/fj.202002444R