19 Matching Annotations
  1. Apr 2024
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data
    1
    1. scibot 10 Apr 2024
      RRID:SCR_005484

      DOI: 10.1093/gigascience/giae010

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    ncbi.nlm.nih.gov/pmc/articles/PMC10993716/
  3. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Whole genome assembly and annotation of the King Angelfish (Holacanthus passer) gives insight into the evolution of marine fishes of the Tropical Eastern Pacific
    1
    1. scibot 03 Apr 2024
      RRID:SCR_005484

      DOI: 10.46471/gigabyte.115

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    ncbi.nlm.nih.gov/pmc/articles/PMC10973836/
  4. Nov 2023
  5. www.sciencedirect.com www.sciencedirect.com
    Genomic and transcriptomic characterization of delta SARS-CoV-2 infection in free-ranging white-tailed deer (Odocoileus virginianus)
    1
    1. scibot 29 Nov 2023
      RRID:SCR_005484

      DOI: 10.1016/j.isci.2023.108319

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    sciencedirect.com/science/article/pii/S2589004223023969
  6. Aug 2023
  7. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Haplogenome assembly reveals structural variation in Eucalyptus interspecific hybrids
    1
    1. scibot 29 Aug 2023
      RRID:SCR_005484

      DOI: 10.1093/gigascience/giad064

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    ncbi.nlm.nih.gov/pmc/articles/PMC10460159/
  8. Apr 2023
  9. academic.oup.com academic.oup.com
    GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
    1
    1. scibot 11 Apr 2023
      RRID:SCR_005484

      DOI: 10.1093/gigascience/giad022

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    academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad022/7111624
  10. Mar 2023
  11. europepmc.org europepmc.org
    Metagenomic analysis of coastal Kenya female Aedes aegypti mosquito ...
    2
    1. scibot 30 Mar 2023
      RRID:SCR_005484

      DOI: 10.12688/wellcomeopenres.18868.1

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    2. scibot 30 Mar 2023
      RRID:SCR_005484

      DOI: 10.12688/wellcomeopenres.18868.1

      Resource: Kraken (RRID:SCR_005484)

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    europepmc.org/article/ppr/ppr634883
  12. Mar 2022
  13. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-level genome assembly, annotation, and phylogenomics of the gooseneck barnacle Pollicipes pollicipes
    1
    1. scibot 18 Mar 2022
      RRID:SCR_005484

      DOI: 10.1093/gigascience/giac021

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    ncbi.nlm.nih.gov/pmc/articles/PMC8917513/
  14. Aug 2021
  15. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
    1
    1. scibot 01 Aug 2021
      RRID:SCR_005484

      DOI: 10.1093/gigascience/gix137

      Resource: Kraken (RRID:SCR_005484)

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    ncbi.nlm.nih.gov/pmc/articles/PMC5848817/
  16. Jul 2021
  17. academic.oup.com academic.oup.com
    Comparison of single-nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga toxin–producing Escherichia coli
    1
    1. scibot 30 Jul 2021
      Kraken

      DOI: 10.1093/gigascience/giz104

      Resource: Kraken (RRID:SCR_005484)

      Curator: @Naa003

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      RRIDCUR:Missing RRID:SCR_005484
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    academic.oup.com/gigascience/article/8/8/giz104/5552683
  18. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Major genetic discontinuity and novel toxigenic species in Clostridioides difficile taxonomy
    1
    1. scibot 03 Jul 2021
      RRID:SCR_005484

      DOI: 10.7554/eLife.64325

      Resource: Kraken (RRID:SCR_005484)

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    ncbi.nlm.nih.gov/pmc/articles/PMC8241443/
  19. Jun 2021
  20. academic.oup.com academic.oup.com
    A hybrid de novo assembly of the sea pansy (Renilla muelleri) genome
    1
    1. scibot 23 Jun 2021
      RRID:SCR_005484

      DOI: 10.1093/gigascience/giz026

      Resource: Kraken (RRID:SCR_005484)

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    academic.oup.com/gigascience/article/8/4/giz026/5426564
  21. Feb 2021
  22. academic.oup.com academic.oup.com
    Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines
    1
    1. scibot 24 Feb 2021
      RRID:SCR_005484

      DOI: 10.1093/gigascience/giaa007

      Resource: Kraken (RRID:SCR_005484)

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    academic.oup.com/gigascience/article/9/2/giaa007/5728470
  23. Oct 2020
  24. academic.oup.com academic.oup.com
    IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring
    1
    1. scibot 24 Oct 2020
      RRID:SCR_005484

      DOI: 10.1093/gigascience/giaa111

      Resource: Kraken (RRID:SCR_005484)

      Curator: @evieth

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      RRIDCUR:Validated RRID:SCR_005484
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    academic.oup.com/gigascience/article/9/10/giaa111/5918865
  25. Jan 2020
  26. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
    1
    1. scibot 13 Jan 2020
      RRID:SCR_005484

      DOI: 10.1093/gigascience/giz026

      Resource: Kraken (RRID:SCR_005484)

      Curator: @evieth

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      RRID:SCR_005484 RRIDCUR:Validated
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    ncbi.nlm.nih.gov/pmc/articles/PMC6446218/
  27. Nov 2018
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
    1
    1. scibot 05 Nov 2018
      RRID:SCR_005484

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      (Kraken, RRID:SCR_005484)

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    ncbi.nlm.nih.gov/pmc/articles/PMC6177736/
  29. academic.oup.com academic.oup.com
    Untitled document
    1
    1. scibot 05 Nov 2018
      RRID:SCR_005484

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      (Kraken, RRID:SCR_005484)

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    academic.oup.com/gigascience/article/7/10/giy107/5091799
  30. academic.oup.com academic.oup.com
    Untitled document
    1
    1. scibot 05 Nov 2018
      RRID:SCR_005484

      Curator: @evieth

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      (Kraken, RRID:SCR_005484)

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    academic.oup.com/gigascience/article/7/3/gix137/4803946
  31. academic.oup.com academic.oup.com
    Untitled document
    1
    1. scibot 05 Nov 2018
      RRID:SCR_005484

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      (Kraken, RRID:SCR_005484)

      SciCrunch record: RRID:SCR_005484

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    academic.oup.com/gigascience/article/7/3/1/4803946