231 Matching Annotations
  1. Apr 2024
  2. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mapping brain gene coexpression in daytime transcriptomes unveils diurnal molecular networks and deciphers perturbation gene signatures
    1
    1. scibot 11 Apr 2024
      RRID:SCR_005514

      DOI: 10.1016/j.neuron.2022.09.028

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    ncbi.nlm.nih.gov/pmc/articles/PMC9665885/
  3. www.sciencedirect.com www.sciencedirect.com
    Telomere dysfunction alters intestinal stem cell dynamics to promote cancer
    1
    1. scibot 04 Apr 2024
      RRID:SCR_005514

      DOI: 10.1016/j.devcel.2024.03.020

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    sciencedirect.com/science/article/pii/S1534580724001886
  4. Mar 2024
  5. www.sciencedirect.com www.sciencedirect.com
    Chromosome level genome assembly and transcriptome analysis of E11 cells infected by tilapia lake virus
    1
    1. scibot 27 Mar 2024
      RRID:SCR_005514

      DOI: 10.1016/j.fsi.2024.109505

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    sciencedirect.com/science/article/pii/S1050464824001499
  6. www.sciencedirect.com www.sciencedirect.com
    Peripheral neuronal activation shapes the microbiome and alters gut physiology
    1
    1. scibot 22 Mar 2024
      RRID:SCR_005514

      DOI: 10.1016/j.celrep.2024.113953

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    sciencedirect.com/science/article/pii/S221112472400281X
  7. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    DNA methylation-environment interactions in the human genome
    1
    1. scibot 17 Mar 2024
      RRID:SCR_005514

      DOI: 10.7554/eLife.89371

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    ncbi.nlm.nih.gov/pmc/articles/PMC10942648/
  8. Feb 2024
  9. 52.53.155.43 52.53.155.43
    Transcriptional response of the heart to vagus nerve stimulation
    2
    1. scibot 22 Feb 2024
      RRID:SCR_005514

      DOI: 10.1152/physiolgenomics.00095.2023

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    2. scibot 22 Feb 2024
      RRID:SCR_005514

      DOI: 10.1152/physiolgenomics.00095.2023

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    52.53.155.43/1d74c7a9de06d0c8fd1f9db4b510dc74e1613524/kellett-et-al-2024-transcriptional-response-of-the-heart-to-vagus-nerve-stimulation-html.html
  10. www.sciencedirect.com www.sciencedirect.com
    Embigin deficiency leads to delayed embryonic lung development and high neonatal mortality in mice
    1
    1. scibot 08 Feb 2024
      RRID:SCR_005514

      DOI: 10.1016/j.isci.2024.108914

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    sciencedirect.com/science/article/pii/S2589004224001354
  11. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The Immunogenomic Landscape of Neuroendocrine Prostate Cancer
    1
    1. scibot 02 Feb 2024
      RRID:SCR_005514

      DOI: 10.1158/1078-0432.CCR-22-3743

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    ncbi.nlm.nih.gov/pmc/articles/PMC10524949/
  12. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Recurrent Phases of Strict Protein Limitation Inhibit Tumor Growth and Restore Lifespan in A Drosophila Intestinal Cancer Model
    1
    1. scibot 02 Feb 2024
      SCR_005514

      DOI: 10.14336/AD.2023.0517

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    ncbi.nlm.nih.gov/pmc/articles/PMC10796089/
  13. www.sciencedirect.com www.sciencedirect.com
    PUF partner interactions at a conserved interface shape the RNA-binding landscape and cell fate in Caenorhabditis elegans
    1
    1. scibot 02 Feb 2024
      RRID:SCR_005514

      DOI: 10.1016/j.devcel.2024.01.005

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    sciencedirect.com/science/article/pii/S1534580724000054
  14. Jan 2024
  15. www.sciencedirect.com www.sciencedirect.com
    Cell-cycle-linked growth reprogramming encodes developmental time into leaf morphogenesis
    1
    1. scibot 20 Jan 2024
      RRID:SCR_005514

      DOI: 10.1016/j.cub.2023.12.050

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    sciencedirect.com/science/article/pii/S0960982223017505
  16. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Unique transcriptional profiles underlie osteosarcomagenesis driven by different p53 mutants
    1
    1. scibot 18 Jan 2024
      RRID:SCR_005514

      DOI: 10.1158/0008-5472.CAN-22-3464

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    ncbi.nlm.nih.gov/pmc/articles/PMC10524763/
  17. www.nature.com www.nature.com
    A new genomic framework to categorize pediatric acute myeloid leukemia
    1
    1. scibot 18 Jan 2024
      RRID:SCR_005514

      DOI: 10.1038/s41588-023-01640-3

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    nature.com/articles/s41588-023-01640-3
  18. Dec 2023
  19. www.sciencedirect.com www.sciencedirect.com
    Ethanol induces replication fork stalling and membrane stress in immortalized laryngeal cells
    1
    1. scibot 21 Dec 2023
      RRID:SCR_005514

      DOI: 10.1016/j.isci.2023.108564

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    sciencedirect.com/science/article/pii/S258900422302641X
  20. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    m6A-Mediated Biogenesis of circDDIT4 Inhibits Prostate Cancer Progression by Sequestrating ELAVL1/HuR
    1
    1. scibot 06 Dec 2023
      RRID:SCR_005514

      DOI: 10.1158/1541-7786.MCR-22-0271

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    ncbi.nlm.nih.gov/pmc/articles/PMC10690048/
  21. Nov 2023
  22. dx.doi.org dx.doi.org
    Population-specific Mutation Patterns in Breast Tumors from African American, European American, and Kenyan Patients
    1
    1. scibot 10 Nov 2023
      RRID:SCR_005514

      DOI: 10.1158/2767-9764.CRC-23-0165

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    dx.doi.org/10.1158/2767-9764.CRC-23-0165
  23. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Zinc Finger MYND-Type Containing 8 (ZMYND8) is epigenetically regulated in mutant Isocitrate Dehydrogenase 1 (IDH1) glioma to promote radioresistance
    1
    1. scibot 04 Nov 2023
      RRID:SCR_005514

      DOI: 10.1158/1078-0432.CCR-22-1896

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    ncbi.nlm.nih.gov/pmc/articles/PMC10159884/
  24. Oct 2023
  25. www.sciencedirect.com www.sciencedirect.com
    Transcriptomic and proteomic profiling reveals distinct pathogenic features of peripheral non-classical monocytes in systemic lupus erythematosus
    1
    1. scibot 06 Oct 2023
      RRID:SCR_005514

      DOI: 10.1016/j.clim.2023.109765

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    sciencedirect.com/science/article/pii/S1521661623005284
  26. www.sciencedirect.com www.sciencedirect.com
    Prenatal alcohol alters inflammatory signatures in enteric portal tissues following adult-onset cerebrovascular ischemic stroke
    1
    1. scibot 01 Oct 2023
      RRID:SCR_005514

      DOI: 10.1016/j.isci.2023.107920

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    sciencedirect.com/science/article/pii/S2589004223019971
  27. Aug 2023
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A comparison of the impact on neuronal transcriptome and cognition of rAAV5 transduction with three different doses in the mouse hippocampus
    1
    1. scibot 01 Aug 2023
      RRID:SCR_005514

      DOI: 10.3389/fnmol.2023.1195327

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    ncbi.nlm.nih.gov/pmc/articles/PMC10375024/
  29. Jul 2023
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    A network-based approach reveals long non-coding RNAs associated with disease activity in lupus nephritis: key pathways for flare and potential biomarkers to be used as liquid biopsies
    1
    1. scibot 21 Jul 2023
      SCR_005514

      DOI: 10.3389/fimmu.2023.1203848

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    ncbi.nlm.nih.gov/pmc/articles/PMC10355154/
  31. www.sciencedirect.com www.sciencedirect.com
    Customization of the translational complex regulates mRNA-specific translation to control CNS regeneration
    1
    1. scibot 13 Jul 2023
      RRID:SCR_005514

      DOI: 10.1016/j.neuron.2023.06.005

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    sciencedirect.com/science/article/pii/S0896627323004658
  32. Jun 2023
  33. 52.53.155.43 52.53.155.43
    can-22-3464-html.html
    1
    1. scibot 30 Jun 2023
      RRID:SCR_005514

      DOI: 10.1158/0008-5472.CAN-22-3464

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      Curator: @sofiakhan13

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    52.53.155.43/8f4ba7cf674bbb2f5b6878f674808aab8499538e/can-22-3464-html.html
  34. link.springer.com link.springer.com
    Integrated clinical genomic analysis reveals xenobiotic metabolic genes are downregulated in meningiomas of current smokers
    1
    1. scibot 24 Jun 2023
      RRID:SCR_005514

      DOI: 10.1007/s11060-023-04359-7

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    link.springer.com/article/10.1007/s11060-023-04359-7
  35. www.sciencedirect.com www.sciencedirect.com
    Transcriptomic landscape of early hair follicle and epidermal development
    1
    1. scibot 23 Jun 2023
      RRID:SCR_005514

      DOI: 10.1016/j.celrep.2023.112643

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    sciencedirect.com/science/article/pii/S221112472300654X
  36. www.embopress.org www.embopress.org
    DOT1L bridges transcription and heterochromatin formation at mammalian pericentromeres
    1
    1. scibot 22 Jun 2023
      RRID:SCR_005514

      DOI: 10.15252/embr.202256492

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    embopress.org/doi/10.15252/embr.202256492
  37. dx.doi.org dx.doi.org
    (R)-2-hydroxyglutarate inhibits KDM5 histone lysine demethylases to drive transformation in IDH-mutant cancers
    1
    1. scibot 10 Jun 2023
      RRID:SCR_005514

      DOI: 10.1158/2159-8290.CD-22-0825

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    dx.doi.org/10.1158/2159-8290.CD-22-0825
  38. www.sciencedirect.com www.sciencedirect.com
    Annexin A1 is a cell-intrinsic metalloregulator of zinc in human ILC2s
    1
    1. scibot 09 Jun 2023
      RRID: SCR_005514

      DOI: 10.1016/j.celrep.2023.112610

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    sciencedirect.com/science/article/pii/S2211124723006216
  39. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Activating an Adaptive Immune Response with a Telomerase-mediated Telomere Targeting Therapeutic in Hepatocellular Carcinoma
    1
    1. scibot 03 Jun 2023
      RRID:SCR_005514

      DOI: 10.1158/1535-7163.MCT-23-0039

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    ncbi.nlm.nih.gov/pmc/articles/PMC10233358/
  40. aacrjournals.org aacrjournals.org
    Enhanced glutaminolysis drives hypoxia-induced chemoresistance in pancreatic cancer
    1
    1. scibot 03 Jun 2023
      RRID:SCR_005514

      DOI: 10.1158/0008-5472.CAN-22-2045

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    aacrjournals.org/cancerres/article/83/5/735/716680/Enhanced-Glutaminolysis-Drives-Hypoxia-Induced
  41. 52.53.155.43 52.53.155.43
    mct-23-0039-html.html
    1
    1. scibot 01 Jun 2023
      SCR_005514

      DOI: 10.1158/1535-7163.mct-23-0039

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    52.53.155.43/2e399e27445b3309b8dca3d6b15c5701e7dc6c5e/mct-23-0039-html.html
  42. May 2023
  43. www.sciencedirect.com www.sciencedirect.com
    Mbnl2 loss alters novel context processing and impairs object recognition memory
    1
    1. scibot 14 May 2023
      RRID:SCR_005514

      DOI: 10.1016/j.isci.2023.106732

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    sciencedirect.com/science/article/pii/S258900422300809X
  44. Apr 2023
  45. aacrjournals.org aacrjournals.org
    Multi-substrate metabolic tracing reveals marked heterogeneity and dependency on fatty acid metabolism in human prostate cancer
    1
    1. scibot 21 Apr 2023
      RRID:SCR_005514

      DOI: 10.1158/1541-7786.MCR-22-0796

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    aacrjournals.org/mcr/article/21/4/359/718952/Multi-substrate-Metabolic-Tracing-Reveals-Marked
  46. www.sciencedirect.com www.sciencedirect.com
    Histone phosphorylation integrates the hepatic glucagon-PKA-CREB gluconeogenesis program in response to fasting
    1
    1. scibot 06 Apr 2023
      SCR_005514

      DOI: 10.1016/j.molcel.2023.02.007

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    sciencedirect.com/science/article/pii/S1097276523001028
  47. Mar 2023
  48. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    CHD1 promotes sensitivity to Aurora kinase inhibitors by suppressing interaction of AURKA with its coactivator TPX2
    1
    1. scibot 05 Mar 2023
      RRID:SCR_005514

      DOI: 10.1158/0008-5472.CAN-22-0631

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    ncbi.nlm.nih.gov/pmc/articles/PMC9444962/
  49. Feb 2023
  50. aacrjournals.org aacrjournals.org
    Single-cell analysis in lung adenocarcinoma implicates RNA editing in cancer innate immunity and patient prognosis
    1
    1. scibot 10 Feb 2023
      RRID:SCR_005514

      DOI: 10.1158/0008-5472.CAN-22-1062

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    aacrjournals.org/cancerres/article/83/3/374/716183/Single-Cell-Analysis-in-Lung-Adenocarcinoma
  51. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Integrated Genomic Analysis Identifies UBTF Tandem Duplications as a Recurrent Lesion in Pediatric Acute Myeloid Leukemia
    1
    1. scibot 09 Feb 2023
      RRID:SCR_005514

      DOI: 10.1158/2643-3230.BCD-21-0160

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    ncbi.nlm.nih.gov/pmc/articles/PMC9780084/
  52. www.biorxiv.org www.biorxiv.org
    YTHDC2 serves a distinct late role in spermatocytes during germ cell differentiation
    1
    1. scibot 07 Feb 2023
      RRID:SCR_005514

      DOI: 10.1101/2023.01.23.525146

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    biorxiv.org/content/10.1101/2023.01.23.525146v1
  53. Jan 2023
  54. www.sciencedirect.com www.sciencedirect.com
    MERR APEX-seq protocol for profiling the subcellular nascent transcriptome in mammalian cells
    1
    1. scibot 26 Jan 2023
      RRID:SCR_005514

      DOI: 10.1016/j.xpro.2023.102057

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    sciencedirect.com/science/article/pii/S2666166723000151
  55. www.sciencedirect.com www.sciencedirect.com
    Rewiring of hormones and light response pathways underlies the inhibition of stomatal development in an amphibious plant Rorippa aquatica underwater
    1
    1. scibot 26 Jan 2023
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      DOI: 10.1016/j.cub.2022.12.064

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  56. academic.oup.com academic.oup.com
    Integrating methylome and transcriptome signatures expands the molecular classification of the pituitary tumors
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      DOI: 10.1210/clinem/dgac703

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  57. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Chromosome-level genome assembly of Dastarcus helophoroides provides insights into CYP450 genes expression upon insecticide exposure
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      DOI: 10.1002/ps.7319

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  58. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    PRC2 Inactivating Mutations in Cancer Enhance Cytotoxic Response to DNMT1 Targeted Therapy via Enhanced Viral Mimicry
    1
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      DOI: 10.1158/2159-8290.CD-21-1671

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  59. Dec 2022
  60. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Identification of Protein-RNA Interactions in Mouse Testis Tissue Using fRIP
    1
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      DOI: 10.21769/BioProtoc.4286

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  61. link.springer.com link.springer.com
    Towards resolution of the intron retention paradox in breast cancer
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      DOI: 10.1186/s13058-022-01593-1

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  62. www.mdpi.com www.mdpi.com
    Human PSEN1 Mutant Glia Improve Spatial Learning and Memory in Aged Mice
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      DOI: 10.3390/cells11244116

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  63. Nov 2022
  64. aacrjournals.org aacrjournals.org
    Transcriptomic Correlates of Tumor Cell PD-L1 Expression and Response to Nivolumab Monotherapy in Metastatic Clear Cell Renal Cell Carcinoma
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      DOI: 10.1158/1078-0432.CCR-22-0923

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  65. Oct 2022
  66. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mapping brain gene coexpression in daytime transcriptomes unveils diurnal molecular networks and deciphers perturbation gene signatures
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      DOI: 10.1016/j.neuron.2022.09.028

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  67. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    P2Y6 receptor-mediated signaling amplifies TLR-induced pro-inflammatory responses in microglia
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  68. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Dicer1 deficient mice exhibit premature ageing and metabolic perturbations in adipocytes
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  69. Sep 2022
  70. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Combined – whole blood and skin fibroblasts- transcriptomic analysis in Psoriatic Arthritis reveals molecular signatures of activity, resistance and early response to treatment
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  71. www.sciencedirect.com www.sciencedirect.com
    A small proportion of X-linked genes contribute to X chromosome upregulation in early embryos via BRD4-mediated transcriptional activation
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  72. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Intracellular cholesterol pools regulate oncogenic signaling and epigenetic circuitries in Early T-cell Precursor Acute Lymphoblastic Leukemia
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  73. Aug 2022
  74. 52.53.155.43 52.53.155.43
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  75. 52.53.155.43 52.53.155.43
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  76. Jul 2022
  77. www.sciencedirect.com www.sciencedirect.com
    EGFR signaling activates intestinal stem cells by promoting mitochondrial biogenesis and β-oxidation
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  78. www.sciencedirect.com www.sciencedirect.com
    Spatiotemporal genomic analysis reveals distinct molecular features in recurrent stage I non-small cell lung cancers
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  79. www.cell.com www.cell.com
    Bacterial growth in multicellular aggregates leads to the emergence of complex life cycles
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  80. Jun 2022
  81. www.nature.com www.nature.com
    TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors
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  82. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Comprehensive surfaceome profiling to identify and validate novel cell-surface targets in osteosarcoma
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      DOI: 10.1158/1535-7163.MCT-21-0836

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    EED is required for mouse primordial germ cell differentiation in the embryonic gonad
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  84. www.sciencedirect.com www.sciencedirect.com
    Direct epitranscriptomic regulation of mammalian translation initiation through N4-acetylcytidine
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  85. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Oct4 differentially regulates chromatin opening and enhancer transcription in pluripotent stem cells
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  86. Apr 2022
  87. aacrjournals.org aacrjournals.org
    FREQUENCY AND GENOMIC ASPECTS OF INTRINSIC RESISTANCE TO VISMODEGIB IN LOCALLY ADVANCED BASAL CELL CARCINOMA
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      DOI: 10.1158/1078-0432.CCR-21-3764

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  88. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Presence of H3K4me3 on Paternally Expressed Genes of the Paternal Genome From Sperm to Implantation
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      DOI: 10.3389/fcell.2022.838684

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  89. Mar 2022
  90. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Hypertrophic chondrocytes serve as a reservoir for marrow-associated skeletal stem and progenitor cells, osteoblasts, and adipocytes during skeletal development
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      DOI: 10.7554/eLife.76932

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  91. www.science.org www.science.org
    Multiple approaches converge on three biological subtypes of meningioma and extract new insights from published studies
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      DOI: 10.1126/sciadv.abm6247

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  92. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Nonsense-mediated RNA decay is a unique vulnerability of cancer cells harboring SF3B1 or U2AF1 mutations
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  93. www.sciencedirect.com www.sciencedirect.com
    Metabolic incorporation of electron-rich ribonucleosides enhances APEX-seq for profiling spatially restricted nascent transcriptome
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  94. Feb 2022
  95. www.nature.com www.nature.com
    Global mapping of RNA G-quadruplexes (G4-RNAs) using G4RP-seq
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      DOI: 10.1038/s41596-021-00671-6

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  96. www.sciencedirect.com www.sciencedirect.com
    Uninterrupted CAG repeat drives striatum-selective transcriptionopathy and nuclear pathogenesis in human Huntingtin BAC mice
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      DOI: 10.1016/j.neuron.2022.01.006

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  97. Jan 2022
  98. clincancerres.aacrjournals.org clincancerres.aacrjournals.org
    Modulation of the Human Pancreatic Ductal Adenocarcinoma Immune Microenvironment by Stereotactic Body Radiotherapy
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      DOI: 10.1158/1078-0432.CCR-21-2495

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  99. www.sciencedirect.com www.sciencedirect.com
    Lipid droplet dynamics regulate adult muscle stem cell fate
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  100. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Comparative transcriptomic analysis reveals translationally relevant processes in mouse models of malaria
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  101. Dec 2021
  102. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Transcriptome analysis reveals the contribution of oligodendrocyte and radial glia-derived cues for maintenance of microglia identity
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      DOI: 10.1002/glia.24136

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  103. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Regulatory T-cells inhibit microglia-induced pain hypersensitivity in female mice
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  104. academic.oup.com academic.oup.com
    Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles
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      DOI: 10.1093/g3journal/jkab387

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  105. Nov 2021
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    Disrupted PGR-B and ESR1 signaling underlies defective decidualization linked to severe preeclampsia
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  107. Oct 2021
  108. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multiscale analysis reveals that diet-dependent midgut plasticity emerges from alterations in both stem cell niche coupling and enterocyte size
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      DOI: 10.7554/eLife.64125

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  109. Sep 2021
  110. www.sciencedirect.com www.sciencedirect.com
    Muscle-secreted neurturin couples myofiber oxidative metabolism and slow motor neuron identity
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      DOI: 10.1016/j.cmet.2021.09.003

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    Transcriptional control of brain tumor stem cells by a carbohydrate binding protein
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  112. Aug 2021
  113. academic.oup.com academic.oup.com
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  114. www.sciencedirect.com www.sciencedirect.com
    Lymphocyte-Specific Chromatin Accessibility Pre-determines Glucocorticoid Resistance in Acute Lymphoblastic Leukemia
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    Dysregulated oxalate metabolism is a driver and therapeutic target in atherosclerosis
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  118. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  119. link.springer.com link.springer.com
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  124. Jul 2021
  125. www.nature.com www.nature.com
    Severe head dysgenesis resulting from imbalance between anterior and posterior ontogenetic programs
    1
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  127. www.nature.com www.nature.com
    α-Ketoglutarate links p53 to cell fate during tumour suppression
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  128. genesdev.cshlp.org genesdev.cshlp.org
    Specialization of the Drosophila nuclear export family protein Nxf3 for piRNA precursor export
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  129. link.springer.com link.springer.com
    Genome-wide association and differential expression analysis of salt tolerance in <Emphasis Type="Italic">Gossypium hirsutum</Emphasis> L at the germination stage
    1
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  130. journals.plos.org journals.plos.org
    Desmoplasia and oncogene driven acinar-to-ductal metaplasia are concurrent events during acinar cell-derived pancreatic cancer initiation in young adult mice
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  131. link.springer.com link.springer.com
    Mitochondrial genomic variation drives differential nuclear gene expression in discrete regions of Drosophila gene and protein interaction networks
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  132. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Transcriptome profiling of developing photoreceptor subtypes reveals candidate genes involved in avian photoreceptor diversification
    1
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  133. www.sciencedirect.com www.sciencedirect.com
    Activation Dynamics and Immunoglobulin Evolution of Pre-existing and Newly Generated Human Memory B cell Responses to Influenza Hemagglutinin
    1
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  134. www.frontiersin.org www.frontiersin.org
    The Inducible Response of the Nematode Caenorhabditis elegans to Members of Its Natural Microbiota Across Development and Adult Life
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      DOI: 10.3389/fmicb.2019.01793

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  135. www.mdpi.com www.mdpi.com
    Role of MYC-miR-29-B7-H3 in Medulloblastoma Growth and Angiogenesis
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    Translational Regulation of Non-autonomous Mitochondrial Stress Response Promotes Longevity
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  137. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  138. www.sciencedirect.com www.sciencedirect.com
    The RNA-Binding Protein PUM2 Impairs Mitochondrial Dynamics and Mitophagy During Aging
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  139. www.sciencedirect.com www.sciencedirect.com
    Developmental Heterogeneity of Microglia and Brain Myeloid Cells Revealed by Deep Single-Cell RNA Sequencing
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  140. europepmc.org europepmc.org
    The conserved RNA helicase YTHDC2 regulates the transition from proliferation to differentiation in the germline.
    2
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  141. www.sciencedirect.com www.sciencedirect.com
    Deregulated Expression of Mammalian lncRNA through Loss of SPT6 Induces R-Loop Formation, Replication Stress, and Cellular Senescence
    1
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      HTseq

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    Acetylation of Cytidine in mRNA Promotes Translation Efficiency
    1
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    Spatiotemporal m(i)RNA Architecture and 3′ UTR Regulation in the C. elegans Germline
    1
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      HTSeq

      DOI: 10.1016/j.devcel.2018.10.005

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  144. www.sciencedirect.com www.sciencedirect.com
    Succinate Dehydrogenase Supports Metabolic Repurposing of Mitochondria to Drive Inflammatory Macrophages
    2
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      HTSeq

      DOI: 10.1016/j.cell.2016.08.064

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      DOI: 10.1016/j.cell.2016.08.064

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  145. Jun 2021
  146. bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com
    Activation of nuclear receptor PXR induces atherogenic lipids and PCSK9 through SREBP2‐mediated mechanism
    1
    1. scibot 25 Jun 2021
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      DOI: 10.1111/bph.15433

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  147. www.sciencedirect.com www.sciencedirect.com
    Cytokinins initiate secondary growth in the Arabidopsis root through a set of LBD genes
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      DOI: 10.1016/j.cub.2021.05.036

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    Sublayer- and cell-type-specific neurodegenerative transcriptional trajectories in hippocampal sclerosis
    1
    1. scibot 09 Jun 2021
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      DOI: 10.1016/j.celrep.2021.109229

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    sciencedirect.com/science/article/pii/S2211124721005805
  149. May 2021
  150. bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com
    BPS Publications
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    1. scibot 20 May 2021
      RRID:SCR_005514

      DOI: 10.1111/bph.15411

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  151. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Morphological and genomic shifts in mole-rat ‘queens’ increase fecundity but reduce skeletal integrity
    1
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      DOI: 10.7554/eLife.65760

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  152. Apr 2021
  153. www.sciencedirect.com www.sciencedirect.com
    Efficient RNA polymerase II pause release requires U2 snRNP function
    1
    1. scibot 26 Apr 2021
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    Messenger RNA capture sequencing of extracellular RNA from human biofluids using a comprehensive set of spike-in controls
    1
    1. scibot 17 Apr 2021
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      DOI: 10.1016/j.xpro.2021.100475

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    Single-cell transcriptomics identifies gene expression networks driving differentiation and tumorigenesis in the human fallopian tube
    1
    1. scibot 15 Apr 2021
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      DOI: 10.1016/j.celrep.2021.108978

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    Cellular mRNA triggers structural transformation of Ebola virus matrix protein VP40 to its essential regulatory form
    1
    1. scibot 14 Apr 2021
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      DOI: 10.1016/j.celrep.2021.108986

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  157. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Evidence for additive and synergistic action of mammalian enhancers during cell fate determination
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    Molecular pathways behind acquired obesity: adipose tissue and skeletal muscle multiomics in monozygotic twin pairs discordant for BMI
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  159. Mar 2021
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    Seroconversion stages COVID19 into distinct pathophysiological states
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  161. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Basis of specificity for a conserved and promiscuous chromatin remodeling protein
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    Serial transplantation unmasks galectin-9 contribution to tumor immune escape in the MB49 murine model
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    EKLF/KLF1 expression defines a unique macrophage subset during mouse erythropoiesis
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    Short-term exposure to intermittent hypoxia leads to changes in gene expression seen in chronic pulmonary disease
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    Convergent organization of aberrant MYB complex controls oncogenic gene expression in acute myeloid leukemia
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  166. Feb 2021
  167. elifesciences.org elifesciences.org
    Def6 regulates endogenous type-I interferon responses in osteoblasts and suppresses osteogenesis
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    Interferon-λ Mediates Non-redundant Front-Line Antiviral Protection against Influenza Virus Infection without Compromising Host Fitness
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  169. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Identification of regenerative processes in neonatal spinal cord injury in the opossum (Monodelphis domestica), a transcriptomic study
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  170. cancerres.aacrjournals.org cancerres.aacrjournals.org
    Transcriptional Activation of MYC-Induced Genes by GCN5 Promotes B-cell Lymphomagenesis
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    Temporal evolution of single-cell transcriptomes of Drosophila olfactory projection neurons
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  173. Jan 2021
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    Specific Neuroligin3–αNeurexin1 signaling regulates GABAergic synaptic function in mouse hippocampus
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    Charting Extracellular Transcriptomes in The Human Biofluid RNA Atlas
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  176. Dec 2020
  177. www.cell.com www.cell.com
    Circadian VIPergic Neurons of the Suprachiasmatic Nuclei Sculpt the Sleep-Wake Cycle
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    Large-scale Generation of Functional and Transplantable Hepatocytes and Cholangiocytes from Human Endoderm Stem Cells
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  179. Nov 2020
  180. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    A molecular map of lung neuroendocrine neoplasms
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  181. Sep 2020
  182. elifesciences.org elifesciences.org
    A human ESC-based screen identifies a role for the translated lncRNA LINC00261 in pancreatic endocrine differentiation
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    Non-Canonical Caspase Activity Antagonizes p38 MAPK Stress-Priming Function to Support Development
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    Senescence-Induced Vascular Remodeling Creates Therapeutic Vulnerabilities in Pancreas Cancer
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    Transposase-assisted tagmentation of RNA/DNA hybrid duplexes
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    Postprandial Hypoglycemia in Patients after Gastric Bypass Surgery Is Mediated by Glucose-Induced IL-1β
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    Bacterial Nucleoside Catabolism Controls Quorum Sensing and Commensal-to-Pathogen Transition in the Drosophila Gut
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    Genetic Variation in Type 1 Diabetes Reconfigures the 3D Chromatin Organization of T Cells and Alters Gene Expression
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    Inhibition of the catalytic subunit of DNA‐dependent protein kinase (DNA‐PKcs) stimulates osteoblastogenesis by potentiating bone morphogenetic protein 2 (BMP2) responses
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    OsNSUN2-Mediated 5-Methylcytosine mRNA Modification Enhances Rice Adaptation to High Temperature
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  191. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    INO80C Remodeler Maintains Genomic Stability by Preventing Promiscuous Transcription at Replication Origins
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    Immune Sensing of Synthetic, Bacterial, and Protozoan RNA by Toll-like Receptor 8 Requires Coordinated Processing by RNase T2 and RNase 2
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    Defective Mitochondrial Cardiolipin Remodeling Dampens HIF-1α Expression in Hypoxia
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  194. Jan 2020
  195. www.sciencedirect.com www.sciencedirect.com
    A Pathogen-Responsive Gene Cluster for Highly Modified Fatty Acids in Tomato
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    Single-cell transcriptomes and whole-brain projections of serotonin neurons in the mouse dorsal and median raphe nuclei
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    RNA 5-Methylcytosine Facilitates the Maternal-to-Zygotic Transition by Preventing Maternal mRNA Decay
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    The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs
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    Naa10p Inhibits Beige Adipocyte-Mediated Thermogenesis through N-α-acetylation of Pgc1α
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    TREM2 Acts Downstream of CD33 in Modulating Microglial Pathology in Alzheimer’s Disease
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    The transcription factor odd-paired regulates temporal identity in transit-amplifying neural progenitors via an incoherent feed-forward loop
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    The piRNA Response to Retroviral Invasion of the Koala Genome
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    Atlas of Subcellular RNA Localization Revealed by APEX-Seq
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    FOXA2 Is Required for Enhancer Priming during Pancreatic Differentiation
    1
    1. scibot 13 Jan 2020
      RRID:SCR_005514

      DOI: 10.1016/j.celrep.2019.06.034

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    sciencedirect.com/science/article/pii/S2211124719308009
  205. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Conversion of random X-inactivation to imprinted X-inactivation by maternal PRC2
    1
    1. scibot 13 Jan 2020
      RRID:SCR_005514

      DOI: 10.7554/eLife.44258

      Resource: HTSeq (RRID:SCR_005514)

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    ncbi.nlm.nih.gov/pmc/articles/PMC6541438/
  206. www.sciencedirect.com www.sciencedirect.com
    Single-Cell RNA-Seq Reveals Developmental Origins and Ontogenetic Stability of Neurexin Alternative Splicing Profiles
    1
    1. scibot 13 Jan 2020
      RRID:SCR_005514

      DOI: 10.1016/j.celrep.2019.05.090

      Resource: HTSeq (RRID:SCR_005514)

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    sciencedirect.com/science/article/pii/S2211124719307296
  207. www.sciencedirect.com www.sciencedirect.com
    Yeast Sirtuin Family Members Maintain Transcription Homeostasis to Ensure Genome Stability
    1
    1. scibot 13 Jan 2020
      RRID:SCR_005514

      DOI: 10.1016/j.celrep.2019.05.009

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    sciencedirect.com/science/article/pii/S2211124719306205
  208. www.sciencedirect.com www.sciencedirect.com
    Distinct Immune Cell Populations Define Response to Anti-PD-1 Monotherapy and Anti-PD-1/Anti-CTLA-4 Combined Therapy
    1
    1. scibot 13 Jan 2020
      RRID:SCR_005514

      DOI: 10.1016/j.ccell.2019.01.003

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    sciencedirect.com/science/article/pii/S1535610819300376
  209. genomebiology.biomedcentral.com genomebiology.biomedcentral.com
    Untitled document
    1
    1. scibot 13 Jan 2020
      RRID:SCR_005514

      DOI: 10.1186/s13059-019-1671-x

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    genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1671-x
  210. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
    1
    1. scibot 13 Jan 2020
      RRID:SCR_005514

      DOI: 10.7554/eLife.43101

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    ncbi.nlm.nih.gov/pmc/articles/PMC6368402/
  211. www.sciencedirect.com www.sciencedirect.com
    Untitled document
    1
    1. scibot 13 Jan 2020
      RRID:SCR_005514

      DOI: 10.1016/j.cell.2019.01.040

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    sciencedirect.com/science/article/pii/S0092867419301035
  212. www.sciencedirect.com www.sciencedirect.com
    Untitled document
    1
    1. scibot 13 Jan 2020
      RRID:SCR_005514

      DOI: 10.1016/j.celrep.2019.03.104

      Resource: HTSeq (RRID:SCR_005514)

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    sciencedirect.com/science/article/pii/S2211124719304516
  213. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Natural variation in sugar tolerance associates with changes in signaling and mitochondrial ribosome biogenesis
    1
    1. scibot 13 Jan 2020
      RRID:SCR_005514

      DOI: 10.7554/eLife.40841

      Resource: HTSeq (RRID:SCR_005514)

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    ncbi.nlm.nih.gov/pmc/articles/PMC6301794/
  214. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Chromosome-scale genome assembly of kiwifruit Actinidia eriantha with single-molecule sequencing and chromatin interaction mapping
    1
    1. scibot 12 Jan 2020
      RRID:SCR_005514

      DOI: 10.1093/gigascience/giz027

      Resource: HTSeq (RRID:SCR_005514)

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    ncbi.nlm.nih.gov/pmc/articles/PMC6446220/
  215. Nov 2018
  216. www.sciencedirect.com www.sciencedirect.com
    Identification of piRNA Binding Sites Reveals the Argonaute Regulatory Landscape of the C. elegans Germline
    1
    1. scibot 05 Nov 2018
      Htseq

      Curator: @Jmenke

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      (HTSeq, RRID:SCR_005514)

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    sciencedirect.com/science/article/pii/S009286741830117X
  217. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Metformin Targets Mitochondrial Electron Transport to Reduce Air-Pollution-Induced Thrombosis
    1
    1. scibot 05 Nov 2018
      HTSeq

      Curator: @Jmenke

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      (HTSeq, RRID:SCR_005514)

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    ncbi.nlm.nih.gov/pmc/articles/PMC6365216/
  218. www.sciencedirect.com www.sciencedirect.com
    CRISPR Activation Screens Systematically Identify Factors that Drive Neuronal Fate and Reprogramming
    1
    1. scibot 05 Nov 2018
      HTseq

      Curator: @Jmenke

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      (HTSeq, RRID:SCR_005514)

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    sciencedirect.com/science/article/pii/S1934590918304405
  219. www.sciencedirect.com www.sciencedirect.com
    Untitled document
    1
    1. scibot 05 Nov 2018
      SCR_005514

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      (HTSeq, RRID:SCR_005514)

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    sciencedirect.com/science/article/pii/S221112471831502X
  220. www-sciencedirect-com.ezproxy.is.ed.ac.uk www-sciencedirect-com.ezproxy.is.ed.ac.uk
    CD8+ T Cell Priming in Established Chronic Viral Infection Preferentially Directs Differentiation of Memory-like Cells for Sustained Immunity
    1
    1. scibot 05 Nov 2018
      HTSeq

      Curator: @Jmenke

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      (HTSeq, RRID:SCR_005514)

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    www-sciencedirect-com.ezproxy.is.ed.ac.uk/science/article/pii/S107476131830342X
  221. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Stage-Specific Transcription Factors Drive Astrogliogenesis by Remodeling Gene Regulatory Landscapes
    1
    1. scibot 05 Nov 2018
      RRID:SCR_005514

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      (HTSeq, RRID:SCR_005514)

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    ncbi.nlm.nih.gov/pmc/articles/PMC6179960/
  222. www.sciencedirect.com www.sciencedirect.com
    Untitled document
    1
    1. scibot 05 Nov 2018
      RRID:SCR_005514

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      (HTSeq, RRID:SCR_005514)

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    sciencedirect.com/science/article/pii/S1934590918304454
  223. www.nature.com www.nature.com
    RANKL/RANK control Brca1 mutation-driven mammary tumors
    1
    1. scibot 05 Nov 2018
      HTSeq

      Curator: @anp055

      Resource used:

      (HTSeq, RRID:SCR_005514)

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    nature.com/articles/cr201669
  224. www.sciencedirect.com www.sciencedirect.com
    Antibodies Set Boundaries Limiting Microbial Metabolite Penetration and the Resultant Mammalian Host Response
    1
    1. scibot 05 Nov 2018
      HTSeq

      Curator: @evieth

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      (HTSeq, RRID:SCR_005514)

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    sciencedirect.com/science/article/pii/S1074761318303443
  225. www.sciencedirect.com www.sciencedirect.com
    Neurons under T Cell Attack Coordinate Phagocyte-Mediated Synaptic Stripping
    1
    1. scibot 05 Nov 2018
      HTSeq

      Curator: @Jmenke

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      (HTSeq, RRID:SCR_005514)

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    sciencedirect.com/science/article/pii/S0092867418309772
  226. www.sciencedirect.com www.sciencedirect.com
    Single-Cell RNA Sequencing Analysis Reveals Sequential Cell Fate Transition during Human Spermatogenesis
    1
    1. scibot 05 Nov 2018
      HTSeq

      Curator: @Jmenke

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      (HTSeq, RRID:SCR_005514)

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    sciencedirect.com/science/article/pii/S1934590918303928
  227. www.sciencedirect.com www.sciencedirect.com
    A Nuclear Export Block Triggers the Decay of Newly Synthesized Polyadenylated RNA
    1
    1. scibot 05 Nov 2018
      HTSeq

      Curator: @evieth

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      (HTSeq, RRID:SCR_005514)

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    sciencedirect.com/science/article/pii/S2211124718312361
  228. www.sciencedirect.com www.sciencedirect.com
    APD-Containing Cyclolipodepsipeptides Target Mitochondrial Function in Hypoxic Cancer Cells
    1
    1. scibot 05 Nov 2018
      HTSeq

      Curator: @Jmenke

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      (HTSeq, RRID:SCR_005514)

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    sciencedirect.com/science/article/pii/S2451945618302629
  229. www.sciencedirect.com www.sciencedirect.com
    Pseudouridylation of tRNA-Derived Fragments Steers Translational Control in Stem Cells
    1
    1. scibot 05 Nov 2018
      HTSeq

      Curator: @Jmenke

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      (HTSeq, RRID:SCR_005514)

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    sciencedirect.com/science/article/pii/S0092867418302885
  230. www.nature.com www.nature.com
    Untitled document
    1
    1. scibot 05 Nov 2018
      RRID:SCR_005514

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    nature.com/articles/s41598-018-29993-4
  231. www.sciencedirect.com www.sciencedirect.com
    Ultraconserved Enhancers Are Required for Normal Development
    1
    1. scibot 05 Nov 2018
      HTSeq

      Curator: @Jmenke

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      (HTSeq, RRID:SCR_005514)

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    sciencedirect.com/science/article/pii/S0092867417314976
  232. www.sciencedirect.com www.sciencedirect.com
    Regulation of Epithelial Plasticity Determines Metastatic Organotropism in Pancreatic Cancer
    1
    1. scibot 05 Nov 2018
      HTSeq

      Curator: @Jmenke

      Resource used:

      (HTSeq, RRID:SCR_005514)

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    sciencedirect.com/science/article/pii/S1534580718304180
  233. www.sciencedirect.com www.sciencedirect.com
    Arabidopsis Serrate Coordinates Histone Methyltransferases ATXR5/6 and RNA Processing Factor RDR6 to Regulate Transposon Expression
    1
    1. scibot 05 Nov 2018
      HTSeq

      Curator: @Jmenke

      Resource used:

      (HTSeq, RRID:SCR_005514)

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    sciencedirect.com/science/article/pii/S1534580718304167
  234. www.sciencedirect.com www.sciencedirect.com
    Direct Control of SPEECHLESS by PIF4 in the High-Temperature Response of Stomatal Development
    1
    1. scibot 05 Nov 2018
      HTSeq

      Curator: @Jmenke

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      (HTSeq, RRID:SCR_005514)

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    sciencedirect.com/science/article/pii/S0960982218302392
  235. www.sciencedirect.com www.sciencedirect.com
    Morphogenesis and Compartmentalization of the Intestinal Crypt
    1
    1. scibot 05 Nov 2018
      HTSeq

      Curator: @Jmenke

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      (HTSeq, RRID:SCR_005514)

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    sciencedirect.com/science/article/pii/S1534580718302442
  236. elifesciences.org elifesciences.org
    Epigenetic drift of H3K27me3 in aging links glycolysis to healthy longevity in Drosophila
    1
    1. scibot 05 Nov 2018
      RRID:SCR_005514

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      (HTSeq, RRID:SCR_005514)

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    elifesciences.org/articles/35368
  237. www.sciencedirect.com www.sciencedirect.com
    Ezh2 and Runx1 Mutations Collaborate to Initiate Lympho-Myeloid Leukemia in Early Thymic Progenitors
    1
    1. scibot 05 Nov 2018
      RRID:SCR_005514

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      (HTSeq, RRID:SCR_005514)

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    sciencedirect.com/science/article/pii/S1535610818300060
  238. www.sciencedirect.com www.sciencedirect.com
    PNPT1 Release from Mitochondria during Apoptosis Triggers Decay of Poly(A) RNAs
    1
    1. scibot 05 Nov 2018
      RRID:SCR_005514

      Resource used:

      (HTSeq, RRID:SCR_005514)

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    sciencedirect.com/science/article/pii/S0092867418305105
  239. www.sciencedirect.com www.sciencedirect.com
    Lineage-Determining Transcription Factor TCF-1 Initiates the Epigenetic Identity of T Cells
    1
    1. scibot 05 Nov 2018
      RRID:SCR_005514

      Resource used:

      (HTSeq, RRID:SCR_005514)

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    sciencedirect.com/science/article/pii/S1074761318300335