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  1. Last 7 days
  2. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Impacts of in-vitro zebularine treatment on genome-wide DNA methylation and transcriptomic profiles in Salix purpurea L.
    1
    1. scibot 28 Jun 2024
      RRID:SCR_005604

      DOI: 10.1111/ppl.14403

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    onlinelibrary.wiley.com/doi/10.1111/ppl.14403
  3. Jun 2024
  4. www.sciencedirect.com www.sciencedirect.com
    Individual longitudinal changes in DNA-methylome identify signatures of early-life adversity and correlate with later outcome.
    1
    1. scibot 04 Jun 2024
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      DOI: 10.1016/j.ynstr.2024.100652

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    sciencedirect.com/science/article/pii/S2352289524000481
  5. May 2024
  6. www.sciencedirect.com www.sciencedirect.com
    MECP2 directly interacts with RNA polymerase II to modulate transcription in human neurons
    1
    1. scibot 02 May 2024
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      DOI: 10.1016/j.neuron.2024.04.007

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    sciencedirect.com/science/article/pii/S0896627324002459
  7. Feb 2024
  8. www.biorxiv.org www.biorxiv.org
    Within-subject changes in methylome profile identify individual signatures of early-life adversity, with a potential to predict neuropsychiatric outcome
    1
    1. scibot 15 Feb 2024
      RRID:SCR_005604

      DOI: 10.1101/2023.12.16.571594

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    biorxiv.org/content/10.1101/2023.12.16.571594v1
  9. Jan 2024
  10. www.biorxiv.org www.biorxiv.org
    Within-subject changes in methylome profile identify individual signatures of early-life adversity, with a potential to predict neuropsychiatric outcome
    1
    1. scibot 12 Jan 2024
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      DOI: 10.1101/2023.12.16.571594

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    biorxiv.org/content/10.1101/2023.12.16.571594v1
  11. Dec 2023
  12. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    OvaPrintâ„¢ - a cell-free DNA methylation liquid biopsy for the risk assessment of high-grade serous ovarian cancer
    1
    1. scibot 20 Dec 2023
      RRID:SCR_005604

      DOI: 10.1158/1078-0432.CCR-23-1197

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    ncbi.nlm.nih.gov/pmc/articles/PMC10722131/
  13. 52.53.155.43 52.53.155.43
    ccr-23-1197-html.html
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    1. scibot 01 Dec 2023
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      DOI: 10.1158/1078-0432.ccr-23-1197

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    52.53.155.43/8e6c19ff0ebd31977cad3f1aabd24a62c95cd19f/ccr-23-1197-html.html
  14. Nov 2023
  15. dx.doi.org dx.doi.org
    epialleleR: an R/Bioconductor package for sensitive allele-specific methylation analysis in NGS data
    1
    1. scibot 03 Nov 2023
      RRID:SCR_005604

      DOI: 10.1093/gigascience/giad087

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    dx.doi.org/10.1093/gigascience/giad087
  16. Oct 2023
  17. www.nature.com www.nature.com
    TET2 lesions enhance the aggressiveness of CEBPA-mutant acute myeloid leukemia by rebalancing GATA2 expression
    1
    1. scibot 06 Oct 2023
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      DOI: 10.1038/s41467-023-41927-x

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    nature.com/articles/s41467-023-41927-x
  18. Sep 2023
  19. www.sciencedirect.com www.sciencedirect.com
    Perturbations in 3D genome organization can promote acquired drug resistance
    1
    1. scibot 30 Sep 2023
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      DOI: 10.1016/j.celrep.2023.113124

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    sciencedirect.com/science/article/pii/S2211124723011361
  20. 52.53.155.43 52.53.155.43
    jkad203-html.html
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    1. scibot 22 Sep 2023
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      DOI: 10.1093/g3journal/jkad203

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    52.53.155.43/213eef494e744243d5c25ee25ef9fbca7c526326/jkad203-html.html
  21. Aug 2023
  22. 52.53.155.43 52.53.155.43
    Evaluation of cytosine conversion methods for whole-genome DNA methylation profiling
    1
    1. scibot 12 Aug 2023
      RRID:SCR_005604

      DOI: 10.12688/f1000research.128391.1

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    52.53.155.43/0437548470cda97ce909894a5888517b73909f28/8e420e57-e09a-4026-a616-03b621d0c144_128391_-_asela_wijeratne-html.html
  23. Jun 2023
  24. aacrjournals.org aacrjournals.org
    Comprehensive DNA methylation analysis indicates that pancreatic intraepithelial neoplasia lesions are acinar-derived and epigenetically primed for carcinogenesis
    1
    1. scibot 03 Jun 2023
      RRID:SCR_005604

      DOI: 10.1158/0008-5472.CAN-22-4052

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    aacrjournals.org/cancerres/article/83/11/1905/726442/Comprehensive-DNA-Methylation-Analysis-Indicates
  25. May 2023
  26. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    DNA methylation changes underlie the long-term association between periodontitis and atherosclerotic cardiovascular disease
    1
    1. scibot 09 May 2023
      RRID:SCR_005604

      DOI: 10.3389/fcvm.2023.1164499

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    ncbi.nlm.nih.gov/pmc/articles/PMC10160482/
  27. Jan 2023
  28. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Cancer stem cells, not bulk tumor cells, determine mechanisms of resistance to SMO inhibitors
    1
    1. scibot 25 Jan 2023
      RRID:SCR_005604

      DOI: 10.1158/2767-9764.crc-22-0124

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    ncbi.nlm.nih.gov/pmc/articles/PMC9853917/
  29. Nov 2022
  30. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    FOXR2 is an epigenetically regulated pan-cancer oncogene that activates ETS transcriptional circuits
    1
    1. scibot 02 Nov 2022
      RRID:SCR_005604

      DOI: 10.1158/0008-5472.CAN-22-0671

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    ncbi.nlm.nih.gov/pmc/articles/PMC9437574/
  31. Oct 2022
  32. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Multiomic characterization and drug testing establish circulating tumor cells as an ex vivo tool for personalized medicine
    1
    1. scibot 08 Oct 2022
      RRID:SCR_005604

      DOI: 10.1016/j.isci.2022.105081

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    ncbi.nlm.nih.gov/pmc/articles/PMC9529671/
  33. 52.53.155.43 52.53.155.43
    1-s2.0-S2589004222013530-main-html.html
    1
    1. scibot 06 Oct 2022
      RRID:SCR_005604

      DOI: 10.1093/bib/bbaa156

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    52.53.155.43/c48193a37113c2957d0d524999944a402836d9cc/1-s2.0-S2589004222013530-main-html.html
  34. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Human PSCs determine the competency of cerebral organoid differentiation via FGF signaling and epigenetic mechanisms
    1
    1. scibot 04 Oct 2022
      RRID:SCR_005604

      DOI: 10.1016/j.isci.2022.105140

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    ncbi.nlm.nih.gov/pmc/articles/PMC9523398/
  35. Sep 2022
  36. aacrjournals.org aacrjournals.org
    PU.1-dependent enhancer inhibition separates Tet2-deficient hematopoiesis from malignant transformation
    1
    1. scibot 30 Sep 2022
      RRID:SCR_005604

      DOI: 10.1158/2643-3230.BCD-21-0226

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    aacrjournals.org/bloodcancerdiscov/article/3/5/444/708355/PU-1-Dependent-Enhancer-Inhibition-Separates-Tet2
  37. Jun 2022
  38. aacrjournals.org aacrjournals.org
    Cancer Stem Cells, not Bulk Tumor Cells, Determine Mechanisms of Resistance to SMO Inhibitors
    1
    1. scibot 15 Jun 2022
      RRID:SCR_005604

      DOI: 10.1158/2767-9764.CRC-22-0124

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    aacrjournals.org/cancerrescommun/article/2/6/402/699311/Cancer-Stem-Cells-not-Bulk-Tumor-Cells-Determine
  39. Apr 2022
  40. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Presence of H3K4me3 on Paternally Expressed Genes of the Paternal Genome From Sperm to Implantation
    1
    1. scibot 01 Apr 2022
      RRID:SCR_005604

      DOI: 10.3389/fcell.2022.838684

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    ncbi.nlm.nih.gov/pmc/articles/PMC8960379/
  41. Mar 2022
  42. www.sciencedirect.com www.sciencedirect.com
    Single nucleus multi-omics identifies human cortical cell regulatory genome diversity
    1
    1. scibot 11 Mar 2022
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      DOI: 10.1016/j.xgen.2022.100107

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    sciencedirect.com/science/article/pii/S2666979X22000271
  43. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Distribution and regulatory roles of oxidized 5-methylcytosines in DNA and RNA of the basidiomycete fungi Laccaria bicolor and Coprinopsis cinerea
    1
    1. scibot 11 Mar 2022
      RRID:SCR_005604

      DOI: 10.1098/rsob.210302

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    ncbi.nlm.nih.gov/pmc/articles/PMC8889193/
  44. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Discovery of candidate DNA methylation cancer driver genes
    1
    1. scibot 04 Mar 2022
      RRID:SCR_005604

      DOI: 10.1158/2159-8290.CD-20-1334

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    ncbi.nlm.nih.gov/pmc/articles/PMC8419066/
  45. Feb 2022
  46. link.springer.com link.springer.com
    When left does not seem right: epigenetic and bioelectric differences between left- and right-sided breast cancer
    1
    1. scibot 08 Feb 2022
      RRID:SCR_005604

      DOI: 10.1186/s10020-022-00440-5

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    link.springer.com/article/10.1186/s10020-022-00440-5
  47. Sep 2021
  48. www.nature.com www.nature.com
    Multi-platform profiling characterizes molecular subgroups and resistance networks in chronic lymphocytic leukemia
    1
    1. scibot 22 Sep 2021
      RRID:SCR_005604

      DOI: 10.1038/s41467-021-25403-y

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    nature.com/articles/s41467-021-25403-y
  49. Aug 2021
  50. www.sciencedirect.com www.sciencedirect.com
    Lymphocyte-Specific Chromatin Accessibility Pre-determines Glucocorticoid Resistance in Acute Lymphoblastic Leukemia
    1
    1. scibot 10 Aug 2021
      RRID:SCR_005604

      DOI: 10.1016/j.ccell.2018.11.002

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    sciencedirect.com/science/article/pii/S1535610818305233
  51. www.ncbi.nlm.nih.govhttp: www.ncbi.nlm.nih.govhttp:
    Untitled document
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    1. scibot 08 Aug 2021
      RRID:SCR_005604

      DOI: 10.1038/s41598-018-29993-4

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    ncbi.nlm.nih.govhttp://europepmc.org/articles/PMC6070528/
  52. Jul 2021
  53. elifesciences.org elifesciences.org
    Untitled document
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    1. scibot 31 Jul 2021
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      DOI: 10.7554/eLife.39380

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    elifesciences.org/articles/39380
  54. www.sciencedirect.com www.sciencedirect.com
    Targeting CDK9 Reactivates Epigenetically Silenced Genes in Cancer
    1
    1. scibot 30 Jul 2021
      RRID:SCR_005604

      DOI: 10.1016/j.cell.2018.09.051

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    sciencedirect.com/science/article/pii/S0092867418312637
  55. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    1. scibot 29 Jul 2021
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      DOI: 10.1038/s41598-018-29993-4

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    ncbi.nlm.nih.gov/pmc/articles/PMC6070528/
  56. www.sciencedirect.com www.sciencedirect.com
    Histone H3K9 Methyltransferase G9a in Oocytes Is Essential for Preimplantation Development but Dispensable for CG Methylation Protection
    1
    1. scibot 28 Jul 2021
      Bismark v0.14.5

      DOI: 10.1016/j.celrep.2019.03.002

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    sciencedirect.com/science/article/pii/S2211124719303092
  57. www.sciencedirect.com www.sciencedirect.com
    Widespread Enhancer Dememorization and Promoter Priming during Parental-to-Zygotic Transition
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    1. scibot 27 Jul 2021
      Bismark

      DOI: 10.1016/j.molcel.2018.10.017

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    sciencedirect.com/science/article/pii/S1097276518308773
  58. www.sciencedirect.com www.sciencedirect.com
    N6-methyladenine DNA Modification in Glioblastoma
    1
    1. scibot 27 Jul 2021
      Bismark

      DOI: 10.1016/j.cell.2018.10.006

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    sciencedirect.com/science/article/pii/S009286741831314X
  59. Jun 2021
  60. www.sciencedirect.com www.sciencedirect.com
    Probing the signaling requirements for naive human pluripotency by high-throughput chemical screening
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    1. scibot 16 Jun 2021
      RRID:SCR_005604

      DOI: 10.1016/j.celrep.2021.109233

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    sciencedirect.com/science/article/pii/S2211124721005921
  61. May 2021
  62. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Comparison of Global DNA Methylation Patterns in Human Melanoma Tissues and Their Derivative Cell Lines
    1
    1. scibot 19 May 2021
      RRID:SCR_005604

      DOI: 10.3390/cancers13092123

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    ncbi.nlm.nih.gov/pmc/articles/PMC8124222/
  63. Oct 2020
  64. pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
    Cord blood DNA methylome in newborns later diagnosed with autism spectrum disorder reflects early dysregulation of neurodevelopmental and X-linked genes
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    1. scibot 16 Oct 2020
      SCR_005604

      DOI: 10.1186/s13073-020-00785-8

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    pubmed.ncbi.nlm.nih.gov/33054850/
  65. Sep 2020
  66. www.sciencedirect.com www.sciencedirect.com
    Regulatory Dynamics of Tet1 and Oct4 Resolve Stages of Global DNA Demethylation and Transcriptomic Changes in Reprogramming
    1
    1. scibot 16 Sep 2020
      RRID:SCR_005604

      DOI: 10.1016/j.celrep.2020.01.065

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    sciencedirect.com/science/article/pii/S2211124720300905
  67. Jan 2020
  68. www.sciencedirect.com www.sciencedirect.com
    Identification and Analyses of Extra-Cranial and Cranial Rhabdoid Tumor Molecular Subgroups Reveal Tumors with Cytotoxic T Cell Infiltration
    1
    1. scibot 13 Jan 2020
      RRID:SCR_005604

      DOI: 10.1016/j.celrep.2019.10.013

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  69. www.sciencedirect.com www.sciencedirect.com
    TET2 Regulates the Neuroinflammatory Response in Microglia
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    1. scibot 13 Jan 2020
      RRID:SCR_005604

      DOI: 10.1016/j.celrep.2019.09.013

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    A Unique Epigenomic Landscape Defines Human Erythropoiesis
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    1. scibot 13 Jan 2020
      RRID:SCR_005604

      DOI: 10.1016/j.celrep.2019.08.020

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  71. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Untitled document
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    1. scibot 13 Jan 2020
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      DOI: 10.7554/eLife.40675

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  72. www.sciencedirect.com www.sciencedirect.com
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      DOI: 10.1016/j.cmet.2019.02.014

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  73. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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      DOI: 10.7554/eLife.39380

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  74. Nov 2018
  75. www.sciencedirect.com www.sciencedirect.com
    Transcription Elongation Can Affect Genome 3D Structure
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      Bismark

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  76. www.nature.com www.nature.com
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  77. www.sciencedirect.com www.sciencedirect.com
    Arabidopsis Serrate Coordinates Histone Methyltransferases ATXR5/6 and RNA Processing Factor RDR6 to Regulate Transposon Expression
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      Bismark

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  78. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Forniceal deep brain stimulation induces gene expression and splicing changes that promote neurogenesis and plasticity
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  79. academic.oup.com academic.oup.com
    Maser: one-stop platform for NGS big data from analysis to visualization
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    1. scibot 05 Nov 2018
      SCR_005604

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  80. elifesciences.org elifesciences.org
    Integration of human pancreatic islet genomic data refines regulatory mechanisms at Type 2 Diabetes susceptibility loci
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  81. Nov 2017
  82. www.sciencedirect.com www.sciencedirect.com
    The Role of N-α-acetyltransferase 10 Protein in DNA Methylation and Genomic Imprinting
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      Bismark

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  83. elifesciences.org elifesciences.org
    Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells
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    1. scibot 08 Nov 2017
      bismark

      Curator: @chewbeccax

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  84. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Mice deficient of Myc super-enhancer region reveal differential control mechanism between normal and pathological growth
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      SCR_005604

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  85. www.sciencedirect.com www.sciencedirect.com
    Using DNA Methylation Profiling to Evaluate Biological Age and Longevity Interventions
    1
    1. scibot 08 Nov 2017
      Detection of methylation sites: Bismark v.0.14.5

      Curator: @Zeljana_Babic

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  86. www.sciencedirect.com www.sciencedirect.com
    Single-Cell 5-Formylcytosine Landscapes of Mammalian Early Embryos and ESCs at Single-Base Resolution
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    1. scibot 08 Nov 2017
      Bismark tool (version: 0.13)

      Curator: @Zeljana_Babic

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  87. elifesciences.org elifesciences.org
    Epigenetic regulation of lateralized fetal spinal gene expression underlies hemispheric asymmetries
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    elifesciences.org/articles/22784
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    A Biobank of Breast Cancer Explants with Preserved Intra-tumor Heterogeneity to Screen Anticancer Compounds
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    1. scibot 08 Nov 2017
      Bismark

      Curator: @gabimpine

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