Hypothesis

62 Matching Annotations

Jul 2025
52.53.155.43 52.53.155.43

1-s2.0-S0016508525057324-main-html.html

1
1. scibot 08 Jul 2025
  
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  DOI: 10.1053/j.gastro.2025.07.003
  
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52.53.155.43/a363e4ae90be5a0c17cae72bbc9ca19379f34011/1-s2.0-S0016508525057324-main-html.html
Jun 2025
52.53.155.43 52.53.155.43

1-s2.0-S2589004225011162-main-html.html

1
1. scibot 11 Jun 2025
  
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  RRID:SCR_005807
  
  DOI: 10.1016/j.isci.2025.112855
  
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52.53.155.43/aade76b5737bfade2462ebc8caccc014a630e1a8/1-s2.0-S2589004225011162-main-html.html
Feb 2025
www.sciencedirect.com www.sciencedirect.com

The impact of air pollution on sperm DNA methylation

1
1. scibot 25 Feb 2025
  
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  DOI: 10.1016/j.reprotox.2025.108850
  
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sciencedirect.com/science/article/pii/S0890623825000218
pmc.ncbi.nlm.nih.gov pmc.ncbi.nlm.nih.gov

Histone H4 acetylation differentially modulates proliferation in adult oligodendrocyte progenitors

1
1. scibot 13 Feb 2025
  
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  DOI: 10.1083/jcb.202308064
  
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pmc.ncbi.nlm.nih.gov/articles/PMC11318668/
Jun 2024
www.sciencedirect.com www.sciencedirect.com

Individual longitudinal changes in DNA-methylome identify signatures of early-life adversity and correlate with later outcome.

1
1. scibot 04 Jun 2024
  
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  DOI: 10.1016/j.ynstr.2024.100652
  
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sciencedirect.com/science/article/pii/S2352289524000481
May 2024
www.sciencedirect.com www.sciencedirect.com

Osr2 functions as a biomechanical checkpoint to aggravate CD8+ T cell exhaustion in tumor

2
1. scibot 14 May 2024
  
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  DOI: 10.1016/j.cell.2024.04.023
  
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2. scibot 14 May 2024
  
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  RRID:SCR_005807
  
  DOI: 10.1016/j.cell.2024.04.023
  
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sciencedirect.com/science/article/pii/S0092867424004483
Feb 2024
www.biorxiv.org www.biorxiv.org

Within-subject changes in methylome profile identify individual signatures of early-life adversity, with a potential to predict neuropsychiatric outcome

1
1. scibot 15 Feb 2024
  
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  DOI: 10.1101/2023.12.16.571594
  
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biorxiv.org/content/10.1101/2023.12.16.571594v1
Jan 2024
www.biorxiv.org www.biorxiv.org

Within-subject changes in methylome profile identify individual signatures of early-life adversity, with a potential to predict neuropsychiatric outcome

1
1. scibot 12 Jan 2024
  
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  DOI: 10.1101/2023.12.16.571594
  
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biorxiv.org/content/10.1101/2023.12.16.571594v1
Aug 2023
52.53.155.43 52.53.155.43

Loss of CtBP2 may be a mechanistic link between metabolic derangements and progressive impairment of pancreatic β cell function

2
1. scibot 18 Aug 2023
  
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  RRID:SCR_005807
  
  DOI: 10.1016/j.celrep.2023.112914
  
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2. scibot 10 Aug 2023
  
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  RRID:SCR_005807
  
  DOI: 10.1016/j.celrep.2023.112914
  
  Resource: GREAT: Genomic Regions Enrichment of Annotations Tool (RRID:SCR_005807)
  
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52.53.155.43/464fcb14db36fa0ad68672734eea21dbff7f105c/PIIS2211124723009257-html.html
Jul 2023
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Pharmacological HDAC inhibition impairs pancreatic β-cell function through an epigenome-wide reprogramming

1
1. scibot 27 Jul 2023
  
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  RRID:SCR_005807
  
  DOI: 10.1016/j.isci.2023.107231
  
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ncbi.nlm.nih.gov/pmc/articles/PMC10366467/
Nov 2022
www.sciencedirect.com www.sciencedirect.com

Tip60-mediated H2A.Z acetylation promotes neuronal fate specification and bivalent gene activation

1
1. scibot 24 Nov 2022
  
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  DOI: 10.1016/j.molcel.2022.11.002
  
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sciencedirect.com/science/article/abs/pii/S1097276522010644
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

FOXR2 is an epigenetically regulated pan-cancer oncogene that activates ETS transcriptional circuits

1
1. scibot 02 Nov 2022
  
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  RRID:SCR_005807
  
  DOI: 10.1158/0008-5472.CAN-22-0671
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9437574/
Jun 2022
elifesciences.org elifesciences.org

Dnmt3a knockout in excitatory neurons impairs postnatal synapse maturation and increases the repressive histone modification H3K27me3

1
1. scibot 09 Jun 2022
  
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  RRID:SCR_005807
  
  DOI: 10.7554/eLife.66909
  
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elifesciences.org/articles/66909
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Global-run on sequencing identifies Gm11967 as an Akt-dependent long noncoding RNA involved in insulin sensitivity

1
1. scibot 07 Jun 2022
  
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  RRID:SCR_005807
  
  DOI: 10.1016/j.isci.2022.104410
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9156944/
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Oct4 differentially regulates chromatin opening and enhancer transcription in pluripotent stem cells

1
1. scibot 01 Jun 2022
  
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  RRID:SCR_005807
  
  DOI: 10.7554/eLife.71533
  
  Resource: GREAT: Genomic Regions Enrichment of Annotations Tool (RRID:SCR_005807)
  
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ncbi.nlm.nih.gov/pmc/articles/PMC9142147/
Apr 2022
www.sciencedirect.com www.sciencedirect.com

An adult-stage transcriptional program for survival of serotonergic connectivity

1
1. scibot 21 Apr 2022
  
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  RRID:SCR_005807
  
  DOI: 10.1016/j.celrep.2022.110711
  
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sciencedirect.com/science/article/pii/S2211124722004727
Jan 2022
www.sciencedirect.com www.sciencedirect.com

Limb development genes underlie variation in human fingerprint patterns

1
1. scibot 07 Jan 2022
  
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  RRID:SCR_005807
  
  DOI: 10.1016/j.cell.2021.12.008
  
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sciencedirect.com/science/article/pii/S009286742101446X
Dec 2021
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

PEGS: An efficient tool for gene set enrichment within defined sets of genomic intervals

1
1. scibot 15 Dec 2021
  
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  RRID:SCR_00580
  
  DOI: 10.12688/f1000research.53926.2
  
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  Curator: @evieth
  
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  RRID:SCR_005807 RRIDCUR:Unresolved RRIDCUR:Incorrect
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ncbi.nlm.nih.gov/pmc/articles/PMC8406447/
Oct 2021
bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com

BPS Publications

1
1. scibot 26 Oct 2021
  
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  RRID:SCR_005807
  
  DOI: 10.1002/prp2.749
  
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bpspubs.onlinelibrary.wiley.com/doi/10.1002/prp2.749
www.nature.com www.nature.com

An atlas of gene regulatory elements in adult mouse cerebrum

1
1. scibot 21 Oct 2021
  
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  RRID:SCR_005807
  
  DOI: 10.1038/s41586-021-03604-1
  
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nature.com/articles/s41586-021-03604-1
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Epigenomic and Transcriptomic Dynamics During Human Heart Organogenesis

1
1. scibot 13 Oct 2021
  
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  RRID:SCR_005807
  
  DOI: 10.1161/CIRCRESAHA.120.316704
  
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ncbi.nlm.nih.gov/pmc/articles/PMC7554226/
Sep 2021
f1000research.com f1000research.com

F1000Research Article: PEGS: An efficient tool for gene set enrichment within defined sets of genomic intervals.

1
1. scibot 11 Sep 2021
  
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  RRID:SCR_00580
  
  DOI: 10.12688/f1000research.53926.1
  
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  Curator: @Naa003
  
  SciCrunch record: RRID:SCR_005807
  
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  RRID:SCR_005807 RRIDCUR:Incorrect RRIDCUR:Unresolved
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f1000research.com/articles/10-570
Aug 2021
www.sciencedirect.com www.sciencedirect.com

Lymphocyte-Specific Chromatin Accessibility Pre-determines Glucocorticoid Resistance in Acute Lymphoblastic Leukemia

1
1. scibot 10 Aug 2021
  
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  RRID:SCR_005807
  
  DOI: 10.1016/j.ccell.2018.11.002
  
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sciencedirect.com/science/article/pii/S1535610818305233
onlinelibrary.wiley.com onlinelibrary.wiley.com

Chromosome‐level assembly of Southern catfish (Silurus meridionalis) provides insights into visual adaptation to the nocturnal and benthic lifestyles

1
1. scibot 05 Aug 2021
  
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  RRID:SCR_005807
  
  DOI: 10.1111/1755-0998.13338
  
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onlinelibrary.wiley.com/doi/10.1111/1755-0998.13338
elifesciences.org elifesciences.org

Pharmacological targeting of the transcription factor SOX18 delays breast cancer in mice

1
1. scibot 01 Aug 2021
  
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  RRID:SCR_005807
  
  DOI: 10.7554/eLife.21221
  
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elifesciences.org/articles/21221
Jul 2021
onlinelibrary.wiley.com onlinelibrary.wiley.com

Cooperation of PU.1 With IRF8 and NFATc1 Defines Chromatin Landscapes During RANKL‐Induced Osteoclastogenesis

1
1. scibot 28 Jul 2021
  
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  GREAT
  
  DOI: 10.1002/jbmr.3689
  
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onlinelibrary.wiley.com/doi/full/10.1002/jbmr.3689
www.sciencedirect.com www.sciencedirect.com

RNA Helicase DDX5 Inhibits Reprogramming to Pluripotency by miRNA-Based Repression of RYBP and its PRC1-Dependent and -Independent Functions

2
1. scibot 27 Jul 2021
  
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  GREAT
  
  DOI: 10.1016/j.stem.2016.12.002
  
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  Curator: @Zeljana_Babic
  
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2. scibot 27 Jul 2021
  
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  GREAT
  
  DOI: 10.1016/j.stem.2016.12.002
  
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  Curator: @Zeljana_Babic
  
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sciencedirect.com/science/article/pii/S1934590916304581
Feb 2021
www.biorxiv.org www.biorxiv.org

An Atlas of Gene Regulatory Elements in Adult Mouse Cerebrum

1
1. scibot 25 Feb 2021
  
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  RRID:SCR_005807
  
  DOI: 10.1101/2020.05.10.087585
  
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biorxiv.org/content/10.1101/2020.05.10.087585v2
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The glucocorticoid receptor recruits the COMPASS complex to regulate inflammatory transcription at macrophage enhancers

1
1. scibot 11 Feb 2021
  
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  RRID:SCR_005807
  
  DOI: 10.1016/j.celrep.2021.108742
  
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  Curator: @Naa003
  
  SciCrunch record: RRID:SCR_005807
  
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  RRIDCUR:Validated RRID:SCR_005807
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sciencedirect.com/science/article/pii/S2211124721000553
Dec 2020
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes

1
1. scibot 07 Dec 2020
  
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  RRID:SCR_005807
  
  DOI: 10.7554/eLife.62522
  
  Resource: GREAT: Genomic Regions Enrichment of Annotations Tool (RRID:SCR_005807)
  
  Curator: @evieth
  
  SciCrunch record: RRID:SCR_005807
  
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  RRIDCUR:Validated RRID:SCR_005807
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ncbi.nlm.nih.gov/pmc/articles/PMC7688309/
Sep 2020
www.sciencedirect.com www.sciencedirect.com

Regulatory Dynamics of Tet1 and Oct4 Resolve Stages of Global DNA Demethylation and Transcriptomic Changes in Reprogramming

1
1. scibot 23 Sep 2020
  
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  RRID:SCR_005807
  
  DOI: 10.1016/j.celrep.2020.01.065
  
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  Curator: @ethanbadger
  
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  RRID:SCR_005807 RRIDCUR:Validated
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sciencedirect.com/science/article/pii/S2211124720300905
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov

The testis protein ZNF165 is a SMAD3 cofactor that coordinates oncogenic TGFβ signaling in triple-negative breast cancer

1
1. scibot 14 Sep 2020
  
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  RRID:SCR_005807
  
  DOI: 10.7554/eLife.57679
  
  Resource: GREAT: Genomic Regions Enrichment of Annotations Tool (RRID:SCR_005807)
  
  Curator: @evieth
  
  SciCrunch record: RRID:SCR_005807
  
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  RRID:SCR_005807 RRIDCUR:Validated
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A human ESC-based screen identifies a role for the translated lncRNA LINC00261 in pancreatic endocrine differentiation

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  DOI: 10.7554/eLife.58659
  
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Symmetric Arginine Dimethylation Is Selectively Required for mRNA Splicing and the Initiation of Type I and Type III Interferon Signaling

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The Ovulatory Signal Precipitates LRH-1 Transcriptional Switching Mediated by Differential Chromatin Accessibility

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Genome-wide Analyses of Chromatin State in Human Mast Cells Reveal Molecular Drivers and Mediators of Allergic and Inflammatory Diseases

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Recurrent SMARCB1 Mutations Reveal a Nucleosome Acidic Patch Interaction Site That Potentiates mSWI/SNF Complex Chromatin Remodeling

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Combinatorial action of NF–Y and TALE at embryonic enhancers defines distinct gene expression programs during zygotic genome activation in zebrafish

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A Unique Epigenomic Landscape Defines Human Erythropoiesis

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Chromatin Environment and Cellular Context Specify Compensatory Activity of Paralogous MEF2 Transcription Factors

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Global epigenetic analysis of BDNF Val66Met mice hippocampus reveals changes in dendrite and spine remodeling genes

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HOXA9 Reprograms the Enhancer Landscape to Promote Leukemogenesis

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1. scibot 05 Nov 2018
  
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ZFX Mediates Non-canonical Oncogenic Functions of the Androgen Receptor Splice Variant 7 in Castrate-Resistant Prostate Cancer

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Epigenetic and Transcriptomic Profiling of Mammary Gland Development and Tumor Models Disclose Regulators of Cell State Plasticity

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A Chromatin Basis for Cell Lineage and Disease Risk in the Human Pancreas

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1. scibot 05 Nov 2018
  
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Dissecting the Functional Consequences of De Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology

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Untitled document

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TALE factors use two distinct functional modes to control an essential zebrafish gene expression program

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Constitutively Active SMAD2/3 Are Broad-Scope Potentiators of Transcription-Factor-Mediated Cellular Reprogramming

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A tissue-specific, Gata6-driven transcriptional program instructs remodeling of the mature arterial tree.

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1. scibot 08 Nov 2017
  
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CSNK1a1 Regulates PRMT1 to Maintain the Progenitor State in Self-Renewing Somatic Tissue

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1. scibot 08 Nov 2017
  
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Interferon-γ Represses M2 Gene Expression in Human Macrophages by Disassembling Enhancers Bound by the Transcription Factor MAF

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Enhancer Reprogramming Promotes Pancreatic Cancer Metastasis

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Chromatin Accessibility Landscape of Cutaneous T Cell Lymphoma and Dynamic Response to HDAC Inhibitors

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1. scibot 08 Nov 2017
  
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Stem Cell Lineage Infidelity Drives Wound Repair and Cancer

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Histone Acetylome-wide Association Study of Autism Spectrum Disorder

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Pharmacological targeting of the transcription factor SOX18 delays breast cancer in mice

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A Multi-step Transcriptional and Chromatin State Cascade Underlies Motor Neuron Programming from Embryonic Stem Cells

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