55 Matching Annotations
  1. Feb 2024
  2. www.biorxiv.org www.biorxiv.org
    Within-subject changes in methylome profile identify individual signatures of early-life adversity, with a potential to predict neuropsychiatric outcome
    1
    1. scibot 15 Feb 2024
      RRID:SCR_005807

      DOI: 10.1101/2023.12.16.571594

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    biorxiv.org/content/10.1101/2023.12.16.571594v1
  3. Jan 2024
  4. www.biorxiv.org www.biorxiv.org
    Within-subject changes in methylome profile identify individual signatures of early-life adversity, with a potential to predict neuropsychiatric outcome
    1
    1. scibot 12 Jan 2024
      RRID:SCR_005807

      DOI: 10.1101/2023.12.16.571594

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    biorxiv.org/content/10.1101/2023.12.16.571594v1
  5. Aug 2023
  6. 52.53.155.43 52.53.155.43
    Loss of CtBP2 may be a mechanistic link between metabolic derangements and progressive impairment of pancreatic β cell function
    2
    1. scibot 18 Aug 2023
      RRID:SCR_005807

      DOI: 10.1016/j.celrep.2023.112914

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    2. scibot 10 Aug 2023
      RRID:SCR_005807

      DOI: 10.1016/j.celrep.2023.112914

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    52.53.155.43/464fcb14db36fa0ad68672734eea21dbff7f105c/PIIS2211124723009257-html.html
  7. Jul 2023
  8. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Pharmacological HDAC inhibition impairs pancreatic β-cell function through an epigenome-wide reprogramming
    1
    1. scibot 27 Jul 2023
      RRID:SCR_005807

      DOI: 10.1016/j.isci.2023.107231

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    ncbi.nlm.nih.gov/pmc/articles/PMC10366467/
  9. Nov 2022
  10. www.sciencedirect.com www.sciencedirect.com
    Tip60-mediated H2A.Z acetylation promotes neuronal fate specification and bivalent gene activation
    1
    1. scibot 24 Nov 2022
      RRID:SCR_005807

      DOI: 10.1016/j.molcel.2022.11.002

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    sciencedirect.com/science/article/abs/pii/S1097276522010644
  11. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    FOXR2 is an epigenetically regulated pan-cancer oncogene that activates ETS transcriptional circuits
    1
    1. scibot 02 Nov 2022
      RRID:SCR_005807

      DOI: 10.1158/0008-5472.CAN-22-0671

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    ncbi.nlm.nih.gov/pmc/articles/PMC9437574/
  12. Jun 2022
  13. elifesciences.org elifesciences.org
    Dnmt3a knockout in excitatory neurons impairs postnatal synapse maturation and increases the repressive histone modification H3K27me3
    1
    1. scibot 09 Jun 2022
      RRID:SCR_005807

      DOI: 10.7554/eLife.66909

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    elifesciences.org/articles/66909
  14. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Global-run on sequencing identifies Gm11967 as an Akt-dependent long noncoding RNA involved in insulin sensitivity
    1
    1. scibot 07 Jun 2022
      RRID:SCR_005807

      DOI: 10.1016/j.isci.2022.104410

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    ncbi.nlm.nih.gov/pmc/articles/PMC9156944/
  15. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Oct4 differentially regulates chromatin opening and enhancer transcription in pluripotent stem cells
    1
    1. scibot 01 Jun 2022
      RRID:SCR_005807

      DOI: 10.7554/eLife.71533

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    ncbi.nlm.nih.gov/pmc/articles/PMC9142147/
  16. Apr 2022
  17. www.sciencedirect.com www.sciencedirect.com
    An adult-stage transcriptional program for survival of serotonergic connectivity
    1
    1. scibot 21 Apr 2022
      RRID:SCR_005807

      DOI: 10.1016/j.celrep.2022.110711

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    sciencedirect.com/science/article/pii/S2211124722004727
  18. Jan 2022
  19. www.sciencedirect.com www.sciencedirect.com
    Limb development genes underlie variation in human fingerprint patterns
    1
    1. scibot 07 Jan 2022
      RRID:SCR_005807

      DOI: 10.1016/j.cell.2021.12.008

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    sciencedirect.com/science/article/pii/S009286742101446X
  20. Dec 2021
  21. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    PEGS: An efficient tool for gene set enrichment within defined sets of genomic intervals
    1
    1. scibot 15 Dec 2021
      RRID:SCR_00580

      DOI: 10.12688/f1000research.53926.2

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      Curator: @evieth

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    ncbi.nlm.nih.gov/pmc/articles/PMC8406447/
  22. Oct 2021
  23. bpspubs.onlinelibrary.wiley.com bpspubs.onlinelibrary.wiley.com
    BPS Publications
    1
    1. scibot 26 Oct 2021
      RRID:SCR_005807

      DOI: 10.1002/prp2.749

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    bpspubs.onlinelibrary.wiley.com/doi/10.1002/prp2.749
  24. www.nature.com www.nature.com
    An atlas of gene regulatory elements in adult mouse cerebrum
    1
    1. scibot 21 Oct 2021
      RRID:SCR_005807

      DOI: 10.1038/s41586-021-03604-1

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    nature.com/articles/s41586-021-03604-1
  25. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Epigenomic and Transcriptomic Dynamics During Human Heart Organogenesis
    1
    1. scibot 13 Oct 2021
      RRID:SCR_005807

      DOI: 10.1161/CIRCRESAHA.120.316704

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    ncbi.nlm.nih.gov/pmc/articles/PMC7554226/
  26. Sep 2021
  27. f1000research.com f1000research.com
    F1000Research Article: PEGS: An efficient tool for gene set enrichment within defined sets of genomic intervals.
    1
    1. scibot 11 Sep 2021
      RRID:SCR_00580

      DOI: 10.12688/f1000research.53926.1

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      Curator: @Naa003

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    f1000research.com/articles/10-570
  28. Aug 2021
  29. www.sciencedirect.com www.sciencedirect.com
    Lymphocyte-Specific Chromatin Accessibility Pre-determines Glucocorticoid Resistance in Acute Lymphoblastic Leukemia
    1
    1. scibot 10 Aug 2021
      RRID:SCR_005807

      DOI: 10.1016/j.ccell.2018.11.002

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    sciencedirect.com/science/article/pii/S1535610818305233
  30. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Chromosome‐level assembly of Southern catfish (Silurus meridionalis) provides insights into visual adaptation to the nocturnal and benthic lifestyles
    1
    1. scibot 05 Aug 2021
      RRID:SCR_005807

      DOI: 10.1111/1755-0998.13338

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    onlinelibrary.wiley.com/doi/10.1111/1755-0998.13338
  31. elifesciences.org elifesciences.org
    Pharmacological targeting of the transcription factor SOX18 delays breast cancer in mice
    1
    1. scibot 01 Aug 2021
      RRID:SCR_005807

      DOI: 10.7554/eLife.21221

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    elifesciences.org/articles/21221
  32. Jul 2021
  33. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Cooperation of PU.1 With IRF8 and NFATc1 Defines Chromatin Landscapes During RANKL‐Induced Osteoclastogenesis
    1
    1. scibot 28 Jul 2021
      GREAT

      DOI: 10.1002/jbmr.3689

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    onlinelibrary.wiley.com/doi/full/10.1002/jbmr.3689
  34. www.sciencedirect.com www.sciencedirect.com
    RNA Helicase DDX5 Inhibits Reprogramming to Pluripotency by miRNA-Based Repression of RYBP and its PRC1-Dependent and -Independent Functions
    2
    1. scibot 27 Jul 2021
      GREAT

      DOI: 10.1016/j.stem.2016.12.002

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      Curator: @Zeljana_Babic

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    2. scibot 27 Jul 2021
      GREAT

      DOI: 10.1016/j.stem.2016.12.002

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    sciencedirect.com/science/article/pii/S1934590916304581
  35. Feb 2021
  36. www.biorxiv.org www.biorxiv.org
    An Atlas of Gene Regulatory Elements in Adult Mouse Cerebrum
    1
    1. scibot 25 Feb 2021
      RRID:SCR_005807

      DOI: 10.1101/2020.05.10.087585

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    biorxiv.org/content/10.1101/2020.05.10.087585v2
  37. www.sciencedirect.com www.sciencedirect.com
    The glucocorticoid receptor recruits the COMPASS complex to regulate inflammatory transcription at macrophage enhancers
    1
    1. scibot 11 Feb 2021
      RRID:SCR_005807

      DOI: 10.1016/j.celrep.2021.108742

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    sciencedirect.com/science/article/pii/S2211124721000553
  38. Dec 2020
  39. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes
    1
    1. scibot 07 Dec 2020
      RRID:SCR_005807

      DOI: 10.7554/eLife.62522

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    ncbi.nlm.nih.gov/pmc/articles/PMC7688309/
  40. Sep 2020
  41. www.sciencedirect.com www.sciencedirect.com
    Regulatory Dynamics of Tet1 and Oct4 Resolve Stages of Global DNA Demethylation and Transcriptomic Changes in Reprogramming
    1
    1. scibot 23 Sep 2020
      RRID:SCR_005807

      DOI: 10.1016/j.celrep.2020.01.065

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      Curator: @ethanbadger

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    sciencedirect.com/science/article/pii/S2211124720300905
  42. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    The testis protein ZNF165 is a SMAD3 cofactor that coordinates oncogenic TGFβ signaling in triple-negative breast cancer
    1
    1. scibot 14 Sep 2020
      RRID:SCR_005807

      DOI: 10.7554/eLife.57679

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    ncbi.nlm.nih.gov/pmc/articles/PMC7302877/
  43. elifesciences.org elifesciences.org
    A human ESC-based screen identifies a role for the translated lncRNA LINC00261 in pancreatic endocrine differentiation
    1
    1. scibot 05 Sep 2020
      RRID:SCR_005807

      DOI: 10.7554/eLife.58659

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    elifesciences.org/articles/58659
  44. www.sciencedirect.com www.sciencedirect.com
    Symmetric Arginine Dimethylation Is Selectively Required for mRNA Splicing and the Initiation of Type I and Type III Interferon Signaling
    1
    1. scibot 04 Sep 2020
      SCR_005807

      DOI: 10.1016/j.celrep.2020.01.054

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    sciencedirect.com/science/article/pii/S2211124720300796
  45. Jan 2020
  46. www.sciencedirect.com www.sciencedirect.com
    The Ovulatory Signal Precipitates LRH-1 Transcriptional Switching Mediated by Differential Chromatin Accessibility
    1
    1. scibot 13 Jan 2020
      RRID:SCR_005807

      DOI: 10.1016/j.celrep.2019.07.088

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    sciencedirect.com/science/article/pii/S2211124719310046
  47. www.sciencedirect.com www.sciencedirect.com
    Genome-wide Analyses of Chromatin State in Human Mast Cells Reveal Molecular Drivers and Mediators of Allergic and Inflammatory Diseases
    1
    1. scibot 13 Jan 2020
      RRID:SCR_005807

      DOI: 10.1016/j.immuni.2019.09.021

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    sciencedirect.com/science/article/pii/S1074761319304170
  48. www.sciencedirect.com www.sciencedirect.com
    Recurrent SMARCB1 Mutations Reveal a Nucleosome Acidic Patch Interaction Site That Potentiates mSWI/SNF Complex Chromatin Remodeling
    1
    1. scibot 13 Jan 2020
      RRID:SCR_005807

      DOI: 10.1016/j.cell.2019.10.044

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    sciencedirect.com/science/article/pii/S0092867419312218
  49. www.sciencedirect.com www.sciencedirect.com
    Combinatorial action of NF–Y and TALE at embryonic enhancers defines distinct gene expression programs during zygotic genome activation in zebrafish
    1
    1. scibot 13 Jan 2020
      RRID:SCR_005807

      DOI: 10.1016/j.ydbio.2019.12.003

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    sciencedirect.com/science/article/pii/S0012160619306141
  50. www.sciencedirect.com www.sciencedirect.com
    A Unique Epigenomic Landscape Defines Human Erythropoiesis
    1
    1. scibot 13 Jan 2020
      RRID:SCR_005807

      DOI: 10.1016/j.celrep.2019.08.020

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    sciencedirect.com/science/article/pii/S2211124719310538
  51. www.sciencedirect.com www.sciencedirect.com
    Chromatin Environment and Cellular Context Specify Compensatory Activity of Paralogous MEF2 Transcription Factors
    1
    1. scibot 13 Jan 2020
      SCR_005807

      DOI: 10.1016/j.celrep.2019.10.033

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    sciencedirect.com/science/article/pii/S2211124719313336
  52. onlinelibrary.wiley.com onlinelibrary.wiley.com
    Global epigenetic analysis of BDNF Val66Met mice hippocampus reveals changes in dendrite and spine remodeling genes
    1
    1. scibot 13 Jan 2020
      RRID:SCR_005807

      DOI: 10.1002/hipo.22991

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      Curator: @Jmenke

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    onlinelibrary.wiley.com/doi/full/10.1002/hipo.22991
  53. Nov 2018
  54. www.sciencedirect.com www.sciencedirect.com
    HOXA9 Reprograms the Enhancer Landscape to Promote Leukemogenesis
    1
    1. scibot 05 Nov 2018
      GREAT

      Curator: @Jmenke

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    sciencedirect.com/science/article/pii/S1535610818303787
  55. www.sciencedirect.com www.sciencedirect.com
    ZFX Mediates Non-canonical Oncogenic Functions of the Androgen Receptor Splice Variant 7 in Castrate-Resistant Prostate Cancer
    1
    1. scibot 05 Nov 2018
      GREAT

      Curator: @Jmenke

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    Epigenetic and Transcriptomic Profiling of Mammary Gland Development and Tumor Models Disclose Regulators of Cell State Plasticity
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    A Chromatin Basis for Cell Lineage and Disease Risk in the Human Pancreas
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    Dissecting the Functional Consequences of De Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology
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  59. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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  60. elifesciences.org elifesciences.org
    TALE factors use two distinct functional modes to control an essential zebrafish gene expression program
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    Constitutively Active SMAD2/3 Are Broad-Scope Potentiators of Transcription-Factor-Mediated Cellular Reprogramming
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  62. Nov 2017
  63. europepmc.org europepmc.org
    A tissue-specific, Gata6-driven transcriptional program instructs remodeling of the mature arterial tree.
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    CSNK1a1 Regulates PRMT1 to Maintain the Progenitor State in Self-Renewing Somatic Tissue
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    Interferon-γ Represses M2 Gene Expression in Human Macrophages by Disassembling Enhancers Bound by the Transcription Factor MAF
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    Enhancer Reprogramming Promotes Pancreatic Cancer Metastasis
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    Chromatin Accessibility Landscape of Cutaneous T Cell Lymphoma and Dynamic Response to HDAC Inhibitors
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    Stem Cell Lineage Infidelity Drives Wound Repair and Cancer
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    Histone Acetylome-wide Association Study of Autism Spectrum Disorder
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  70. elifesciences.org elifesciences.org
    Pharmacological targeting of the transcription factor SOX18 delays breast cancer in mice
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    A Multi-step Transcriptional and Chromatin State Cascade Underlies Motor Neuron Programming from Embryonic Stem Cells
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